Wall clock time and date at job start Fri Apr 10 2020 17:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46800 * 2 1 4 4 C 1.37102 * 119.99794 * 273.29164 * 3 2 1 5 5 H 1.08003 * 120.00068 * 49.97063 * 4 3 2 6 6 C 1.38948 * 119.99974 * 229.96254 * 4 3 2 7 7 N 1.31409 * 120.00183 * 200.48982 * 6 4 3 8 8 Si 1.86804 * 119.99883 * 20.49259 * 6 4 3 9 9 H 1.48504 * 109.46915 * 88.18861 * 8 6 4 10 10 H 1.48496 * 109.47281 * 208.18640 * 8 6 4 11 11 H 1.48504 * 109.47208 * 328.18980 * 8 6 4 12 12 C 1.34776 * 119.99831 * 93.29479 * 3 2 1 13 13 O 1.21290 * 120.00336 * 4.80692 * 12 3 2 14 14 C 1.50702 * 119.99601 * 184.80706 * 12 3 2 15 15 H 1.08998 * 109.52688 * 309.23092 * 14 12 3 16 16 C 1.53043 * 109.49794 * 69.31836 * 14 12 3 17 17 C 1.53036 * 109.52504 * 181.30651 * 16 14 12 18 18 C 1.53189 * 109.31653 * 298.63702 * 17 16 14 19 19 N 1.46935 * 108.77092 * 54.63792 * 18 17 16 20 20 S 1.65593 * 120.62972 * 126.37229 * 19 18 17 21 21 N 1.65607 * 107.21911 * 89.99654 * 20 19 18 22 22 O 1.42100 * 106.40401 * 203.53432 * 20 19 18 23 23 O 1.42098 * 106.40279 * 336.45721 * 20 19 18 24 24 C 1.46928 * 118.73847 * 306.38915 * 19 18 17 25 25 H 1.09001 * 109.46289 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46815 * 299.99759 * 1 2 3 27 27 H 1.08991 * 109.46849 * 59.99995 * 1 2 3 28 28 H 1.09001 * 109.46815 * 240.00240 * 2 1 3 29 29 H 1.08996 * 109.47517 * 119.99752 * 2 1 3 30 30 H 0.96995 * 120.00166 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46278 * 61.28995 * 16 14 12 32 32 H 1.09004 * 109.45728 * 301.31616 * 16 14 12 33 33 H 1.09003 * 109.49620 * 58.59492 * 17 16 14 34 34 H 1.09005 * 109.49835 * 178.68522 * 17 16 14 35 35 H 1.09000 * 109.58969 * 174.42341 * 18 17 16 36 36 H 1.08995 * 109.58933 * 294.70836 * 18 17 16 37 37 H 0.97004 * 119.99954 * 149.99660 * 21 20 19 38 38 H 0.96995 * 120.00169 * 329.99864 * 21 20 19 39 39 H 1.08995 * 109.58352 * 173.39900 * 24 19 18 40 40 H 1.08995 * 109.58556 * 293.68414 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1825 2.0503 -1.1854 5 1 1.3831 2.0666 -1.9115 6 6 3.3773 2.7074 -1.4526 7 7 3.4155 3.6591 -2.3579 8 14 4.9292 2.2379 -0.5249 9 1 5.6191 1.1347 -1.2406 10 1 5.8314 3.4144 -0.4418 11 1 4.5708 1.7911 0.8453 12 6 2.3062 1.9942 1.1653 13 8 2.2448 1.3761 2.2071 14 6 2.7043 3.4477 1.1738 15 1 3.5032 3.6109 0.4505 16 6 1.4957 4.3105 0.8034 17 6 1.9074 5.7843 0.7801 18 6 2.3881 6.1983 2.1744 19 7 3.4543 5.2806 2.5988 20 16 4.9216 5.8648 3.0967 21 7 4.8235 6.1071 4.7320 22 8 5.8587 4.8144 2.9023 23 8 5.0622 7.1506 2.5083 24 6 3.1940 3.8348 2.5725 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 4.2497 4.1176 -2.5447 31 1 0.7064 4.1656 1.5409 32 1 1.1303 4.0199 -0.1815 33 1 2.7138 5.9254 0.0604 34 1 1.0522 6.3965 0.4935 35 1 2.7748 7.2168 2.1402 36 1 1.5571 6.1465 2.8778 37 1 5.6168 6.0211 5.2835 38 1 3.9727 6.3350 5.1383 39 1 4.1123 3.2941 2.8009 40 1 2.4310 3.5875 3.3106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596922066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:24 Heat of formation + Delta-G solvation = -129.385811 kcal Electronic energy + Delta-G solvation = -25536.116293 eV Core-core repulsion = 21897.882637 eV Total energy + Delta-G solvation = -3638.233656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34410 -38.86835 -38.44951 -37.06540 -36.83815 -34.61087 -34.12630 -33.44281 -32.35954 -31.24350 -26.64326 -25.70236 -25.54485 -23.36005 -22.16208 -20.98386 -20.43116 -19.52290 -18.80513 -18.45031 -17.77666 -17.31089 -17.14337 -16.70945 -16.23722 -15.70939 -15.61450 -15.48488 -14.93980 -14.81054 -14.55410 -14.34564 -13.99124 -13.80685 -13.52936 -13.39827 -13.31363 -13.13596 -13.10158 -13.07594 -12.82767 -12.65074 -12.31280 -12.02967 -11.92278 -11.82429 -11.61893 -11.47122 -11.32652 -10.97924 -10.43641 -10.09622 -9.50077 -8.57105 -6.24356 -0.56035 1.08612 1.22075 1.28834 1.78422 1.87302 2.06934 2.49863 2.69477 2.90128 3.37124 3.53593 3.91069 3.98653 4.12806 4.20090 4.32277 4.38456 4.51818 4.55522 4.57668 4.69018 4.77318 4.79574 4.96119 4.98797 5.06327 5.13288 5.16107 5.26420 5.40093 5.47667 5.52154 5.54923 5.68648 5.84237 6.33514 6.44928 6.95614 7.34719 7.80636 8.53862 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.006491 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.867289 B = 4312.505083 C = 4554.665639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.093 3.907 3 N -0.479 5.479 4 C -0.332 4.332 5 H 0.087 0.913 6 C 0.068 3.932 7 N -0.870 5.870 8 Si 0.868 3.132 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.264 1.264 12 C 0.495 3.505 13 O -0.612 6.612 14 C -0.115 4.115 15 H 0.066 0.934 16 C -0.089 4.089 17 C -0.126 4.126 18 C 0.112 3.888 19 N -1.002 6.002 20 S 2.803 3.197 21 N -1.236 6.236 22 O -1.025 7.025 23 O -1.005 7.005 24 C 0.144 3.856 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.277 0.723 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.428 0.572 38 H 0.430 0.570 39 H 0.068 0.932 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 5.620 11.692 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 N -0.200 5.200 4 C -0.459 4.459 5 H 0.105 0.895 6 C -0.139 4.139 7 N -0.506 5.506 8 Si 0.694 3.306 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.189 1.189 12 C 0.285 3.715 13 O -0.498 6.498 14 C -0.138 4.138 15 H 0.084 0.916 16 C -0.127 4.127 17 C -0.165 4.165 18 C -0.012 4.012 19 N -0.843 5.843 20 S 2.809 3.191 21 N -0.916 5.916 22 O -1.008 7.008 23 O -0.987 6.987 24 C 0.018 3.982 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.260 0.740 38 H 0.261 0.739 39 H 0.086 0.914 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.303 5.601 11.307 13.044 hybrid contribution 1.121 -0.439 0.329 1.248 sum -2.182 5.161 11.636 12.915 Atomic orbital electron populations 1.21903 0.94540 1.02483 1.01210 1.21651 0.95896 0.83768 1.01600 1.43828 1.59810 1.11497 1.04905 1.18631 0.99990 1.31412 0.95882 0.89517 1.25639 0.98277 0.94783 0.95183 1.69726 1.28176 1.19788 1.32861 0.87112 0.83522 0.78922 0.81028 1.20188 1.21140 1.18865 1.20654 0.78438 0.89113 0.83312 1.90489 1.58787 1.67767 1.32794 1.21570 1.01084 0.93133 0.97966 0.91568 1.21220 0.94769 0.93942 1.02754 1.21835 1.01945 0.95899 0.96857 1.21857 0.90552 0.92243 0.96540 1.57663 1.32495 1.13555 1.80634 1.01011 0.71574 0.72540 0.74014 1.53048 1.21064 1.89777 1.27722 1.93577 1.62520 1.58501 1.86195 1.93589 1.85059 1.42734 1.77333 1.21148 1.02000 0.78516 0.96570 0.89794 0.93950 0.92864 0.90586 0.92079 0.91234 0.90689 0.91102 0.94064 0.87669 0.87786 0.87159 0.73959 0.73919 0.91364 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 10.23 71.98 0.74 -3.93 16 2 C 0.09 3.68 6.17 86.38 0.53 4.21 16 3 N -0.48 -22.24 2.00 -635.52 -1.27 -23.51 16 4 C -0.33 -16.53 7.69 84.04 0.65 -15.89 16 5 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 6 C 0.07 3.53 4.09 84.93 0.35 3.87 16 7 N -0.87 -46.59 13.96 21.66 0.30 -46.29 16 8 Si 0.87 44.36 24.92 68.60 1.71 46.07 16 9 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 10 H -0.29 -15.00 7.11 99.48 0.71 -14.30 16 11 H -0.26 -13.87 5.35 99.48 0.53 -13.34 16 12 C 0.50 23.21 4.51 87.66 0.40 23.60 16 13 O -0.61 -30.01 15.38 -3.06 -0.05 -30.06 16 14 C -0.11 -4.91 1.12 -11.47 -0.01 -4.92 16 15 H 0.07 3.21 2.94 -2.39 -0.01 3.21 16 16 C -0.09 -3.22 5.02 30.62 0.15 -3.07 16 17 C -0.13 -3.81 6.08 30.67 0.19 -3.62 16 18 C 0.11 2.68 6.48 86.36 0.56 3.24 16 19 N -1.00 -29.94 3.35 -513.11 -1.72 -31.65 16 20 S 2.80 84.23 6.73 -56.49 -0.38 83.85 16 21 N -1.24 -21.36 9.58 37.02 0.35 -21.01 16 22 O -1.02 -40.57 16.73 -128.00 -2.14 -42.71 16 23 O -1.01 -34.42 16.73 -128.00 -2.14 -36.56 16 24 C 0.14 5.23 5.20 86.35 0.45 5.68 16 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 29 H 0.06 2.45 7.27 -2.39 -0.02 2.44 16 30 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.97 6.50 -2.38 -0.02 2.96 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.10 2.24 6.92 -2.39 -0.02 2.23 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.43 5.90 8.96 -96.74 -0.87 5.03 16 38 H 0.43 4.66 8.96 -96.75 -0.87 3.80 16 39 H 0.07 2.77 6.91 -2.39 -0.02 2.75 16 40 H 0.10 3.22 7.83 -2.39 -0.02 3.20 16 Total: -1.00 -71.33 323.23 -2.16 -73.49 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.83 Total: 19.18 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 3.99 Total: 9.19 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -2.33 Total: -122.46 kcal Atomic # 8 Polarization: -105.00 SS G_CDS: -4.33 Total: -109.33 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.71 Total: 46.07 kcal Atomic # 16 Polarization: 84.23 SS G_CDS: -0.38 Total: 83.85 kcal Total: -71.33 -2.16 -73.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596922066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.893 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds