Wall clock time and date at job start Fri Apr 10 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 120.00413 * 2 1 4 4 S 1.65603 * 119.99562 * 180.02562 * 2 1 3 5 5 O 1.42101 * 106.40243 * 336.45784 * 4 2 1 6 6 O 1.42097 * 106.40018 * 203.53707 * 4 2 1 7 7 N 1.65601 * 107.21732 * 89.99748 * 4 2 1 8 8 C 1.46496 * 120.00027 * 65.00046 * 7 4 2 9 9 C 1.50698 * 109.47431 * 164.99741 * 8 7 4 10 10 O 1.21285 * 119.99874 * 4.85566 * 9 8 7 11 11 N 1.34776 * 120.00638 * 184.85062 * 9 8 7 12 12 C 1.46492 * 120.00416 * 185.07387 * 11 9 8 13 13 C 1.52996 * 109.47240 * 181.90061 * 12 11 9 14 14 C 1.50704 * 115.55297 * 295.02454 * 13 12 11 15 15 H 1.07999 * 120.00111 * 114.62295 * 14 13 12 16 16 C 1.37878 * 119.99542 * 294.35177 * 14 13 12 17 17 N 1.31516 * 119.99679 * 174.44841 * 16 14 13 18 18 Si 1.86794 * 120.00260 * 354.44945 * 16 14 13 19 19 H 1.48504 * 109.47121 * 89.25946 * 18 16 14 20 20 H 1.48495 * 109.47259 * 209.25799 * 18 16 14 21 21 H 1.48499 * 109.47474 * 329.26154 * 18 16 14 22 22 C 1.53000 * 117.50215 * 80.69241 * 13 12 11 23 23 C 1.52999 * 117.50216 * 149.35576 * 13 12 11 24 24 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46672 * 299.99845 * 1 2 3 26 26 H 1.08997 * 109.47156 * 59.99404 * 1 2 3 27 27 H 1.08994 * 109.46911 * 270.00633 * 3 2 1 28 28 H 1.09003 * 109.46634 * 30.00110 * 3 2 1 29 29 H 1.09002 * 109.47084 * 149.99933 * 3 2 1 30 30 H 0.97001 * 119.99610 * 244.99651 * 7 4 2 31 31 H 1.09002 * 109.47443 * 44.99628 * 8 7 4 32 32 H 1.09003 * 109.46851 * 284.99860 * 8 7 4 33 33 H 0.97002 * 119.99312 * 5.07415 * 11 9 8 34 34 H 1.08997 * 109.47077 * 61.89820 * 12 11 9 35 35 H 1.09002 * 109.47298 * 301.89856 * 12 11 9 36 36 H 0.96998 * 119.99695 * 179.97438 * 17 16 14 37 37 H 1.08995 * 117.50236 * 215.00584 * 22 13 12 38 38 H 1.09000 * 117.49413 * 0.02601 * 22 13 12 39 39 H 1.09002 * 117.49935 * 359.97195 * 23 13 12 40 40 H 1.08997 * 117.50508 * 144.97798 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.4113 -2.4068 0.5434 6 8 3.5759 -1.1572 0.5438 7 7 2.5380 -1.8581 -1.5826 8 6 3.3861 -1.0271 -2.4407 9 6 3.7465 -1.7952 -3.6861 10 8 3.2649 -2.8907 -3.8835 11 7 4.6038 -1.2649 -4.5807 12 6 4.8686 -1.9600 -5.8427 13 6 5.9054 -1.1756 -6.6492 14 6 5.4694 0.1898 -7.1149 15 1 5.9606 1.0727 -6.7335 16 6 4.4471 0.3113 -8.0321 17 7 3.9929 1.5022 -8.3564 18 14 3.7073 -1.2152 -8.8140 19 1 2.5840 -1.7060 -7.9757 20 1 3.2036 -0.8820 -10.1706 21 1 4.7460 -2.2715 -8.9173 22 6 7.3774 -1.3571 -6.2737 23 6 6.8358 -1.9711 -7.5670 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 2.3792 1.5833 -1.0276 28 1 1.6085 2.0283 0.5139 29 1 3.1501 1.1382 0.5139 30 1 2.1199 -2.6566 -1.9411 31 1 4.2957 -0.7596 -1.9029 32 1 2.8470 -0.1207 -2.7161 33 1 5.0455 -0.4229 -4.3888 34 1 3.9447 -2.0370 -6.4159 35 1 5.2509 -2.9592 -5.6339 36 1 3.2740 1.5878 -9.0019 37 1 8.0304 -0.4890 -6.3633 38 1 7.6072 -2.0356 -5.4522 39 1 6.7096 -3.0534 -7.5959 40 1 7.1323 -1.5071 -8.5077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:26 Heat of formation + Delta-G solvation = -81.796808 kcal Electronic energy + Delta-G solvation = -23572.703857 eV Core-core repulsion = 19936.533815 eV Total energy + Delta-G solvation = -3636.170042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.49854 -37.47383 -37.17992 -36.39707 -36.00382 -34.71380 -33.60087 -32.26413 -28.42357 -28.19178 -26.17157 -24.91490 -24.72639 -21.72491 -20.26230 -19.67208 -19.33255 -18.25904 -17.80769 -17.07957 -16.52355 -16.06675 -15.74436 -15.55758 -15.01457 -14.80255 -14.68442 -14.29843 -13.73638 -13.44304 -13.19334 -13.07606 -12.88400 -12.86316 -12.63366 -12.36886 -12.28125 -12.19998 -12.07494 -11.86411 -11.79415 -11.15409 -10.78658 -10.66182 -10.35943 -9.94233 -9.76318 -9.54863 -9.41277 -9.23330 -8.88143 -8.59319 -8.44924 -6.25800 -4.28997 0.37219 2.60531 2.84396 3.21189 3.31437 3.33274 3.37623 3.55671 4.19209 4.31030 4.48211 4.68667 4.88387 5.06043 5.09863 5.10514 5.14987 5.20725 5.31088 5.46310 5.49897 5.54821 5.60130 5.72713 5.89001 6.05054 6.13011 6.16621 6.36772 6.41241 6.63806 6.82222 6.89257 6.94536 7.04751 7.58546 7.95892 8.32569 8.52218 8.75600 9.37730 10.85036 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020432 B = 0.003684 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.085065 B = 7599.304872 C = 7954.485901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.014 6.014 3 C 0.080 3.920 4 S 2.794 3.206 5 O -0.975 6.975 6 O -0.975 6.975 7 N -1.114 6.114 8 C 0.099 3.901 9 C 0.506 3.494 10 O -0.551 6.551 11 N -0.695 5.695 12 C 0.151 3.849 13 C -0.021 4.021 14 C -0.491 4.491 15 H 0.079 0.921 16 C 0.084 3.916 17 N -0.892 5.892 18 Si 0.866 3.134 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.249 1.249 22 C -0.179 4.179 23 C -0.184 4.184 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.426 0.574 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.409 0.591 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -0.613 14.462 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.856 5.856 3 C -0.066 4.066 4 S 2.800 3.200 5 O -0.959 6.959 6 O -0.958 6.958 7 N -0.879 5.879 8 C -0.031 4.031 9 C 0.289 3.711 10 O -0.429 6.429 11 N -0.345 5.345 12 C 0.028 3.972 13 C -0.022 4.022 14 C -0.528 4.528 15 H 0.097 0.903 16 C -0.120 4.120 17 N -0.528 5.528 18 Si 0.693 3.307 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.173 1.173 22 C -0.217 4.217 23 C -0.222 4.222 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.264 0.736 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.245 0.755 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.321 -1.573 15.007 15.696 hybrid contribution -0.659 -0.301 -1.113 1.328 sum -4.980 -1.873 13.894 14.877 Atomic orbital electron populations 1.21553 0.78134 1.03777 1.02328 1.57645 1.15650 1.22402 1.89869 1.21652 0.97260 0.85128 1.02513 1.01682 0.73269 0.72398 0.72621 1.93621 1.66646 1.59130 1.76526 1.93605 1.40439 1.84935 1.76825 1.55688 1.62759 1.38179 1.31239 1.21059 0.96336 0.93884 0.91815 1.20281 0.79618 0.86556 0.84628 1.90653 1.54339 1.20645 1.77303 1.45777 1.44093 1.26340 1.18290 1.21156 0.99116 0.93706 0.83222 1.19621 0.87578 0.96710 0.98271 1.20227 1.18233 0.89115 1.25178 0.90312 1.24911 0.95678 0.95647 0.95759 1.69886 1.27104 1.22626 1.33175 0.87055 0.80292 0.84678 0.78631 1.20337 1.21814 1.17310 1.22812 0.98505 1.02330 0.98012 1.23032 1.06973 0.97443 0.94786 0.89764 0.91785 0.91926 0.92268 0.90577 0.89773 0.73628 0.87594 0.88504 0.75532 0.92157 0.93089 0.92407 0.89516 0.90825 0.91094 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.67 59.85 0.64 1.29 16 2 N -1.01 -9.20 3.64 -129.20 -0.47 -9.67 16 3 C 0.08 0.58 10.70 59.84 0.64 1.22 16 4 S 2.79 33.17 6.14 -107.50 -0.66 32.51 16 5 O -0.98 -14.01 16.70 -57.17 -0.95 -14.97 16 6 O -0.97 -13.78 16.21 -57.17 -0.93 -14.71 16 7 N -1.11 -13.56 6.01 -11.66 -0.07 -13.63 16 8 C 0.10 1.20 6.73 -5.20 -0.03 1.17 16 9 C 0.51 8.38 7.89 -10.99 -0.09 8.29 16 10 O -0.55 -10.87 15.73 5.55 0.09 -10.78 16 11 N -0.70 -12.05 5.47 -60.30 -0.33 -12.38 16 12 C 0.15 3.05 5.14 -4.05 -0.02 3.03 16 13 C -0.02 -0.43 0.84 -155.66 -0.13 -0.56 16 14 C -0.49 -12.19 9.18 -34.44 -0.32 -12.51 16 15 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -25.19 13.96 55.43 0.77 -24.42 16 18 Si 0.87 20.44 25.05 -169.99 -4.26 16.18 16 19 H -0.28 -6.64 6.86 56.52 0.39 -6.25 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.25 -5.55 5.80 56.52 0.33 -5.23 16 22 C -0.18 -3.26 9.96 -26.69 -0.27 -3.53 16 23 C -0.18 -3.60 8.04 -26.69 -0.21 -3.81 16 24 H 0.08 0.67 6.91 -51.93 -0.36 0.32 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 29 H 0.08 0.65 7.02 -51.93 -0.36 0.28 16 30 H 0.43 5.49 7.68 -34.47 -0.26 5.23 16 31 H 0.11 1.09 7.75 -51.93 -0.40 0.69 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.41 6.39 8.36 -40.82 -0.34 6.05 16 34 H 0.06 1.35 4.98 -51.93 -0.26 1.09 16 35 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -33.33 343.66 -7.38 -40.70 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.86 Total: 9.27 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 0.11 Total: -3.29 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.10 Total: -60.10 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.79 Total: -40.46 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.26 Total: 16.18 kcal Atomic # 16 Polarization: 33.17 SS G_CDS: -0.66 Total: 32.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.33 -7.38 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.093 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds