Wall clock time and date at job start Fri Apr 10 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 120.00413 * 2 1 4 4 S 1.65603 * 119.99562 * 180.02562 * 2 1 3 5 5 O 1.42101 * 106.40243 * 336.45784 * 4 2 1 6 6 O 1.42097 * 106.40018 * 203.53707 * 4 2 1 7 7 N 1.65601 * 107.21732 * 89.99748 * 4 2 1 8 8 C 1.46496 * 120.00027 * 65.00046 * 7 4 2 9 9 C 1.50698 * 109.47431 * 164.99741 * 8 7 4 10 10 O 1.21285 * 119.99874 * 4.85566 * 9 8 7 11 11 N 1.34776 * 120.00638 * 184.85062 * 9 8 7 12 12 C 1.46492 * 120.00416 * 185.07387 * 11 9 8 13 13 C 1.52996 * 109.47240 * 181.90061 * 12 11 9 14 14 C 1.50704 * 115.55297 * 295.02454 * 13 12 11 15 15 H 1.07999 * 120.00111 * 114.62295 * 14 13 12 16 16 C 1.37878 * 119.99542 * 294.35177 * 14 13 12 17 17 N 1.31516 * 119.99679 * 174.44841 * 16 14 13 18 18 Si 1.86794 * 120.00260 * 354.44945 * 16 14 13 19 19 H 1.48504 * 109.47121 * 89.25946 * 18 16 14 20 20 H 1.48495 * 109.47259 * 209.25799 * 18 16 14 21 21 H 1.48499 * 109.47474 * 329.26154 * 18 16 14 22 22 C 1.53000 * 117.50215 * 80.69241 * 13 12 11 23 23 C 1.52999 * 117.50216 * 149.35576 * 13 12 11 24 24 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46672 * 299.99845 * 1 2 3 26 26 H 1.08997 * 109.47156 * 59.99404 * 1 2 3 27 27 H 1.08994 * 109.46911 * 270.00633 * 3 2 1 28 28 H 1.09003 * 109.46634 * 30.00110 * 3 2 1 29 29 H 1.09002 * 109.47084 * 149.99933 * 3 2 1 30 30 H 0.97001 * 119.99610 * 244.99651 * 7 4 2 31 31 H 1.09002 * 109.47443 * 44.99628 * 8 7 4 32 32 H 1.09003 * 109.46851 * 284.99860 * 8 7 4 33 33 H 0.97002 * 119.99312 * 5.07415 * 11 9 8 34 34 H 1.08997 * 109.47077 * 61.89820 * 12 11 9 35 35 H 1.09002 * 109.47298 * 301.89856 * 12 11 9 36 36 H 0.96998 * 119.99695 * 179.97438 * 17 16 14 37 37 H 1.08995 * 117.50236 * 215.00584 * 22 13 12 38 38 H 1.09000 * 117.49413 * 0.02601 * 22 13 12 39 39 H 1.09002 * 117.49935 * 359.97195 * 23 13 12 40 40 H 1.08997 * 117.50508 * 144.97798 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.4113 -2.4068 0.5434 6 8 3.5759 -1.1572 0.5438 7 7 2.5380 -1.8581 -1.5826 8 6 3.3861 -1.0271 -2.4407 9 6 3.7465 -1.7952 -3.6861 10 8 3.2649 -2.8907 -3.8835 11 7 4.6038 -1.2649 -4.5807 12 6 4.8686 -1.9600 -5.8427 13 6 5.9054 -1.1756 -6.6492 14 6 5.4694 0.1898 -7.1149 15 1 5.9606 1.0727 -6.7335 16 6 4.4471 0.3113 -8.0321 17 7 3.9929 1.5022 -8.3564 18 14 3.7073 -1.2152 -8.8140 19 1 2.5840 -1.7060 -7.9757 20 1 3.2036 -0.8820 -10.1706 21 1 4.7460 -2.2715 -8.9173 22 6 7.3774 -1.3571 -6.2737 23 6 6.8358 -1.9711 -7.5670 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 2.3792 1.5833 -1.0276 28 1 1.6085 2.0283 0.5139 29 1 3.1501 1.1382 0.5139 30 1 2.1199 -2.6566 -1.9411 31 1 4.2957 -0.7596 -1.9029 32 1 2.8470 -0.1207 -2.7161 33 1 5.0455 -0.4229 -4.3888 34 1 3.9447 -2.0370 -6.4159 35 1 5.2509 -2.9592 -5.6339 36 1 3.2740 1.5878 -9.0019 37 1 8.0304 -0.4890 -6.3633 38 1 7.6072 -2.0356 -5.4522 39 1 6.7096 -3.0534 -7.5959 40 1 7.1323 -1.5071 -8.5077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597610378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:26 Heat of formation + Delta-G solvation = -110.003804 kcal Electronic energy + Delta-G solvation = -23573.927004 eV Core-core repulsion = 19936.533815 eV Total energy + Delta-G solvation = -3637.393189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85740 -38.76869 -38.47803 -37.13983 -36.96234 -35.75375 -35.04633 -34.24867 -29.55088 -28.94621 -27.86539 -26.26149 -25.55554 -23.24064 -21.57992 -21.04628 -20.56825 -19.27127 -18.86087 -18.42475 -17.72517 -17.37677 -17.03900 -16.82736 -16.48582 -15.87862 -15.48772 -15.40686 -15.12704 -14.89265 -14.55695 -14.41866 -14.06160 -13.95469 -13.66163 -13.64445 -13.32916 -13.24760 -13.20733 -13.00089 -12.64527 -12.61623 -12.54380 -12.18485 -12.07929 -11.51074 -11.16087 -10.95189 -10.73441 -10.67262 -10.33755 -10.09183 -9.94176 -8.29491 -6.32951 -0.54710 1.32468 1.40077 1.48694 1.55833 1.72953 2.26543 2.35803 2.44548 3.01013 3.27050 3.34994 3.63349 3.85681 4.02882 4.19137 4.27976 4.34461 4.45478 4.47669 4.53744 4.56356 4.61163 4.79378 4.82968 4.93844 4.96196 5.02290 5.08518 5.09467 5.27758 5.47165 5.50893 5.55800 5.70458 5.89415 6.32050 6.61949 6.75534 7.21045 7.35977 8.84482 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020432 B = 0.003684 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.085065 B = 7599.304872 C = 7954.485901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.010 6.010 3 C 0.071 3.929 4 S 2.811 3.189 5 O -1.003 7.003 6 O -0.998 6.998 7 N -1.117 6.117 8 C 0.102 3.898 9 C 0.503 3.497 10 O -0.584 6.584 11 N -0.696 5.696 12 C 0.157 3.843 13 C -0.043 4.043 14 C -0.474 4.474 15 H 0.050 0.950 16 C 0.037 3.963 17 N -0.938 5.938 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.299 1.299 21 H -0.227 1.227 22 C -0.153 4.153 23 C -0.185 4.185 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.423 0.577 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.417 0.583 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -0.949 15.414 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.853 5.853 3 C -0.074 4.074 4 S 2.818 3.182 5 O -0.987 6.987 6 O -0.982 6.982 7 N -0.880 5.880 8 C -0.027 4.027 9 C 0.289 3.711 10 O -0.465 6.465 11 N -0.346 5.346 12 C 0.033 3.967 13 C -0.044 4.044 14 C -0.511 4.511 15 H 0.068 0.932 16 C -0.162 4.162 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.227 1.227 21 H -0.150 1.150 22 C -0.190 4.190 23 C -0.223 4.223 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.260 0.740 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.254 0.746 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.848 -1.910 15.976 16.544 hybrid contribution -0.763 -0.127 -1.353 1.558 sum -4.611 -2.037 14.623 15.468 Atomic orbital electron populations 1.21747 0.77007 1.03760 1.03958 1.57454 1.16305 1.21971 1.89602 1.21879 0.97295 0.84586 1.03620 1.00984 0.72536 0.72465 0.72197 1.93579 1.67230 1.60739 1.77140 1.93567 1.41863 1.85369 1.77364 1.55686 1.62905 1.38306 1.31139 1.21204 0.97757 0.93847 0.89925 1.20966 0.78505 0.86269 0.85391 1.90637 1.55335 1.22315 1.78259 1.45752 1.44591 1.26613 1.17679 1.20922 0.97526 0.94332 0.83917 1.19475 0.89426 0.95250 1.00278 1.20360 1.16799 0.90310 1.23649 0.93225 1.25509 0.96603 0.97362 0.96704 1.69999 1.28462 1.24484 1.34748 0.86315 0.79887 0.82733 0.77158 1.21190 1.22655 1.14964 1.22854 0.95855 1.02369 0.97952 1.23077 1.05915 0.98372 0.94918 0.90637 0.90030 0.90480 0.91062 0.88470 0.90280 0.74045 0.85367 0.85791 0.74603 0.94715 0.92080 0.92692 0.89461 0.88192 0.89123 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.67 127.77 1.36 2.40 16 2 N -1.01 -16.24 3.64 -562.68 -2.05 -18.29 16 3 C 0.07 0.85 10.70 127.77 1.37 2.22 16 4 S 2.81 63.37 6.14 -56.49 -0.35 63.02 16 5 O -1.00 -28.29 16.70 -128.00 -2.14 -30.43 16 6 O -1.00 -26.94 16.21 -128.00 -2.08 -29.02 16 7 N -1.12 -25.67 6.01 -190.80 -1.15 -26.82 16 8 C 0.10 2.26 6.73 85.63 0.58 2.84 16 9 C 0.50 15.89 7.89 87.66 0.69 16.58 16 10 O -0.58 -22.55 15.73 -3.05 -0.05 -22.60 16 11 N -0.70 -22.98 5.47 -463.09 -2.53 -25.51 16 12 C 0.16 6.06 5.14 86.38 0.44 6.50 16 13 C -0.04 -1.72 0.84 -52.93 -0.04 -1.77 16 14 C -0.47 -23.41 9.18 25.60 0.23 -23.18 16 15 H 0.05 2.70 8.06 -2.91 -0.02 2.67 16 16 C 0.04 1.97 5.47 84.65 0.46 2.44 16 17 N -0.94 -53.97 13.96 21.45 0.30 -53.67 16 18 Si 0.91 42.09 25.05 68.60 1.72 43.81 16 19 H -0.29 -13.43 6.86 99.48 0.68 -12.75 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.23 -9.51 5.80 99.48 0.58 -8.94 16 22 C -0.15 -5.10 9.96 30.62 0.30 -4.79 16 23 C -0.18 -6.69 8.04 30.62 0.25 -6.45 16 24 H 0.07 1.12 6.91 -2.39 -0.02 1.11 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 29 H 0.08 1.05 7.02 -2.39 -0.02 1.04 16 30 H 0.42 10.61 7.68 -96.75 -0.74 9.87 16 31 H 0.13 2.30 7.75 -2.39 -0.02 2.28 16 32 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.42 12.29 8.36 -92.71 -0.78 11.51 16 34 H 0.03 1.52 4.98 -2.39 -0.01 1.51 16 35 H 0.06 2.22 8.09 -2.39 -0.02 2.21 16 36 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -71.79 343.66 -3.27 -75.07 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.60 Total: 27.65 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.65 Total: -3.21 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -5.43 Total: -124.29 kcal Atomic # 8 Polarization: -77.79 SS G_CDS: -4.26 Total: -82.05 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.72 Total: 43.81 kcal Atomic # 16 Polarization: 63.37 SS G_CDS: -0.35 Total: 63.02 kcal Total: -71.79 -3.27 -75.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.938 kcal (2) G-P(sol) polarization free energy of solvation -71.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds