Wall clock time and date at job start Fri Apr 10 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46501 * 119.99741 * 2 1 4 4 C 1.50706 * 109.47104 * 274.99514 * 3 2 1 5 5 H 1.08001 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00291 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99747 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00036 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46858 * 90.00141 * 8 6 4 10 10 H 1.48501 * 109.47034 * 210.00058 * 8 6 4 11 11 H 1.48498 * 109.47011 * 329.99913 * 8 6 4 12 12 S 1.65600 * 120.00330 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40586 * 147.84355 * 12 2 1 14 14 O 1.42106 * 106.40149 * 14.92125 * 12 2 1 15 15 N 1.65601 * 107.21873 * 261.38388 * 12 2 1 16 16 C 1.46497 * 120.00079 * 63.32499 * 15 12 2 17 17 C 1.50702 * 110.01895 * 53.73171 * 16 15 12 18 18 N 1.34781 * 119.99529 * 38.14609 * 17 16 15 19 19 O 1.21279 * 120.00728 * 218.14618 * 17 16 15 20 20 C 1.54268 * 110.03503 * 175.12639 * 16 15 12 21 21 C 1.54961 * 104.16200 * 95.75297 * 20 16 15 22 22 C 1.54890 * 102.77684 * 37.89059 * 21 20 16 23 23 C 1.53875 * 110.03139 * 292.34468 * 16 15 12 24 24 H 1.09004 * 109.47667 * 270.48330 * 1 2 3 25 25 H 1.08996 * 109.47487 * 30.48906 * 1 2 3 26 26 H 1.09000 * 109.47179 * 150.48803 * 1 2 3 27 27 H 1.08991 * 109.47515 * 34.99891 * 3 2 1 28 28 H 1.08998 * 109.47190 * 155.00224 * 3 2 1 29 29 H 0.97006 * 120.00029 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00153 * 243.32061 * 15 12 2 31 31 H 0.96998 * 119.99865 * 354.89822 * 18 17 16 32 32 H 0.97004 * 119.99564 * 174.62137 * 18 17 16 33 33 H 1.09000 * 110.48414 * 214.40549 * 20 16 15 34 34 H 1.09003 * 110.48276 * 337.04299 * 20 16 15 35 35 H 1.08996 * 110.71983 * 279.57625 * 21 20 16 36 36 H 1.09001 * 110.92509 * 156.29558 * 21 20 16 37 37 H 1.09001 * 110.49075 * 203.40686 * 22 21 20 38 38 H 1.08997 * 110.48643 * 80.76004 * 22 21 20 39 39 H 1.08998 * 110.03610 * 359.94624 * 23 16 15 40 40 H 1.09002 * 110.03611 * 121.38733 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9282 1.1938 -2.2332 6 6 3.0005 2.9503 -1.6666 7 7 3.5041 3.6464 -0.6709 8 14 3.1784 3.5665 -3.4210 9 1 2.0180 4.4278 -3.7631 10 1 4.4320 4.3529 -3.5448 11 1 3.2266 2.4088 -4.3497 12 16 2.2930 -1.4341 0.0006 13 8 3.4931 -1.2049 -0.7250 14 8 1.3529 -2.4404 -0.3499 15 7 2.7434 -1.7394 1.5647 16 6 1.7217 -1.9511 2.5931 17 6 0.7709 -3.0371 2.1600 18 7 1.2362 -4.1162 1.5000 19 8 -0.4129 -2.9401 2.4052 20 6 2.3891 -2.3352 3.9299 21 6 2.4965 -0.9943 4.6991 22 6 1.1735 -0.2794 4.3278 23 6 0.9495 -0.6443 2.8457 24 1 -0.3634 0.0087 1.0276 25 1 -0.3634 0.8855 -0.5214 26 1 -0.3633 -0.8943 -0.5062 27 1 1.6501 2.0043 0.5894 28 1 3.1856 1.1178 0.4343 29 1 3.9682 4.4798 -0.8475 30 1 3.6836 -1.7782 1.8000 31 1 2.1693 -4.1598 1.2387 32 1 0.6387 -4.8510 1.2899 33 1 1.7654 -3.0408 4.4787 34 1 3.3793 -2.7559 3.7548 35 1 3.3561 -0.4196 4.3543 36 1 2.5544 -1.1657 5.7740 37 1 1.2773 0.7994 4.4435 38 1 0.3532 -0.6527 4.9408 39 1 1.3354 0.1476 2.2038 40 1 -0.1130 -0.7957 2.6550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735920754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:39 Heat of formation + Delta-G solvation = -106.322896 kcal Electronic energy + Delta-G solvation = -25566.151386 eV Core-core repulsion = 21928.917813 eV Total energy + Delta-G solvation = -3637.233573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35888 -37.33065 -36.63928 -35.57999 -35.27480 -33.98117 -32.65943 -32.45048 -28.88817 -27.89427 -27.55732 -25.05528 -22.59200 -22.26518 -20.94075 -19.93591 -18.85994 -17.69649 -17.18183 -16.90054 -16.57276 -16.37285 -15.77111 -15.15103 -14.99415 -14.52801 -14.37546 -13.92973 -13.56374 -13.35577 -13.17912 -12.54207 -12.37642 -12.20626 -11.94103 -11.65830 -11.64480 -11.46059 -11.22152 -11.20566 -11.09273 -10.98393 -10.84596 -10.71723 -10.57364 -10.52296 -10.33701 -10.01798 -9.71398 -9.41090 -9.22075 -8.46455 -8.06177 -6.08272 -4.11805 1.13829 2.63791 3.30805 3.35730 3.37102 3.43889 3.55848 4.04444 4.39089 4.42805 4.45550 4.79782 4.94649 5.07542 5.26812 5.30943 5.37358 5.43762 5.50137 5.63187 5.67824 5.73531 5.87658 6.03938 6.07795 6.14552 6.33063 6.39378 6.42136 6.57871 6.93387 6.99068 7.18571 7.37190 7.45274 7.57598 7.89736 8.18430 8.35911 8.90770 9.53510 11.00227 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.005604 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.833771 B = 4995.055763 C = 5514.844887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.993 5.993 3 C 0.259 3.741 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.772 3.228 13 O -0.962 6.962 14 O -0.986 6.986 15 N -1.125 6.125 16 C 0.161 3.839 17 C 0.521 3.479 18 N -0.826 5.826 19 O -0.538 6.538 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.152 4.152 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.416 0.584 31 H 0.397 0.603 32 H 0.400 0.600 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -11.806 11.149 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.836 5.836 3 C 0.137 3.863 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.779 3.221 13 O -0.945 6.945 14 O -0.970 6.970 15 N -0.885 5.885 16 C 0.068 3.932 17 C 0.303 3.697 18 N -0.387 5.387 19 O -0.415 6.415 20 C -0.150 4.150 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.191 4.191 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.250 0.750 31 H 0.225 0.775 32 H 0.231 0.769 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.400 -11.956 10.604 16.160 hybrid contribution 0.808 0.388 -0.868 1.248 sum -1.592 -11.568 9.736 15.203 Atomic orbital electron populations 1.21549 0.79776 1.03324 1.01214 1.57528 1.14415 1.23085 1.88541 1.19029 0.90692 0.78894 0.97711 1.21490 1.35956 1.06237 0.92937 0.92152 1.24925 0.95132 0.96500 0.97487 1.69915 1.37399 1.15349 1.30920 0.86513 0.77522 0.78827 0.84708 1.20601 1.21072 1.19722 1.02298 0.73554 0.73395 0.72807 1.93665 1.47223 1.85556 1.68097 1.93589 1.63820 1.57471 1.82075 1.56538 1.14943 1.88865 1.28122 1.20948 0.87694 0.94607 0.89919 1.20493 0.88769 0.83279 0.77167 1.43520 1.14956 1.20958 1.59271 1.90699 1.16060 1.78193 1.56507 1.22569 1.00638 0.98948 0.92844 1.22537 0.98745 0.95162 0.99649 1.22303 0.97129 1.00825 0.95286 1.23106 1.02147 0.95325 0.98538 0.93342 0.90485 0.91607 0.94543 0.94849 0.92704 0.74998 0.77526 0.76923 0.90150 0.90068 0.90653 0.91091 0.90850 0.91412 0.88205 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.01 59.84 0.60 2.18 16 2 N -0.99 -20.08 1.58 -123.06 -0.19 -20.28 16 3 C 0.26 6.27 4.46 -5.19 -0.02 6.25 16 4 C -0.53 -14.61 9.38 -34.44 -0.32 -14.94 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 12 S 2.77 51.70 5.87 -107.50 -0.63 51.07 16 13 O -0.96 -21.92 17.43 -57.17 -1.00 -22.91 16 14 O -0.99 -18.62 12.77 -57.17 -0.73 -19.35 16 15 N -1.13 -15.37 4.82 0.51 0.00 -15.37 16 16 C 0.16 2.09 0.97 -131.85 -0.13 1.96 16 17 C 0.52 7.62 5.23 -10.98 -0.06 7.56 16 18 N -0.83 -10.03 7.10 31.22 0.22 -9.81 16 19 O -0.54 -9.47 16.28 5.56 0.09 -9.38 16 20 C -0.11 -1.07 5.99 -25.03 -0.15 -1.22 16 21 C -0.12 -1.18 6.91 -24.70 -0.17 -1.35 16 22 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 23 C -0.15 -2.12 4.25 -25.61 -0.11 -2.23 16 24 H 0.05 0.78 5.17 -51.93 -0.27 0.51 16 25 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 26 H 0.07 1.17 6.99 -51.93 -0.36 0.81 16 27 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 28 H 0.03 0.85 7.84 -51.93 -0.41 0.44 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.42 4.67 8.41 -34.47 -0.29 4.38 16 31 H 0.40 4.16 7.96 -40.82 -0.33 3.83 16 32 H 0.40 4.35 8.93 -40.82 -0.36 3.98 16 33 H 0.08 0.74 7.85 -51.93 -0.41 0.34 16 34 H 0.08 0.63 7.77 -51.93 -0.40 0.22 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.56 5.01 -51.93 -0.26 1.30 16 40 H 0.10 1.44 5.32 -51.93 -0.28 1.16 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -34.56 325.63 -7.69 -42.25 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.44 Total: 8.81 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.63 Total: -1.66 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: 0.77 Total: -70.45 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -1.64 Total: -51.64 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 51.70 SS G_CDS: -0.63 Total: 51.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.56 -7.69 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735920754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.077 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds