Wall clock time and date at job start Fri Apr 10 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46501 * 119.99741 * 2 1 4 4 C 1.50706 * 109.47104 * 274.99514 * 3 2 1 5 5 H 1.08001 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00291 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99747 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00036 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46858 * 90.00141 * 8 6 4 10 10 H 1.48501 * 109.47034 * 210.00058 * 8 6 4 11 11 H 1.48498 * 109.47011 * 329.99913 * 8 6 4 12 12 S 1.65600 * 120.00330 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40586 * 147.84355 * 12 2 1 14 14 O 1.42106 * 106.40149 * 14.92125 * 12 2 1 15 15 N 1.65601 * 107.21873 * 261.38388 * 12 2 1 16 16 C 1.46497 * 120.00079 * 63.32499 * 15 12 2 17 17 C 1.50702 * 110.01895 * 53.73171 * 16 15 12 18 18 N 1.34781 * 119.99529 * 38.14609 * 17 16 15 19 19 O 1.21279 * 120.00728 * 218.14618 * 17 16 15 20 20 C 1.54268 * 110.03503 * 175.12639 * 16 15 12 21 21 C 1.54961 * 104.16200 * 95.75297 * 20 16 15 22 22 C 1.54890 * 102.77684 * 37.89059 * 21 20 16 23 23 C 1.53875 * 110.03139 * 292.34468 * 16 15 12 24 24 H 1.09004 * 109.47667 * 270.48330 * 1 2 3 25 25 H 1.08996 * 109.47487 * 30.48906 * 1 2 3 26 26 H 1.09000 * 109.47179 * 150.48803 * 1 2 3 27 27 H 1.08991 * 109.47515 * 34.99891 * 3 2 1 28 28 H 1.08998 * 109.47190 * 155.00224 * 3 2 1 29 29 H 0.97006 * 120.00029 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00153 * 243.32061 * 15 12 2 31 31 H 0.96998 * 119.99865 * 354.89822 * 18 17 16 32 32 H 0.97004 * 119.99564 * 174.62137 * 18 17 16 33 33 H 1.09000 * 110.48414 * 214.40549 * 20 16 15 34 34 H 1.09003 * 110.48276 * 337.04299 * 20 16 15 35 35 H 1.08996 * 110.71983 * 279.57625 * 21 20 16 36 36 H 1.09001 * 110.92509 * 156.29558 * 21 20 16 37 37 H 1.09001 * 110.49075 * 203.40686 * 22 21 20 38 38 H 1.08997 * 110.48643 * 80.76004 * 22 21 20 39 39 H 1.08998 * 110.03610 * 359.94624 * 23 16 15 40 40 H 1.09002 * 110.03611 * 121.38733 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9282 1.1938 -2.2332 6 6 3.0005 2.9503 -1.6666 7 7 3.5041 3.6464 -0.6709 8 14 3.1784 3.5665 -3.4210 9 1 2.0180 4.4278 -3.7631 10 1 4.4320 4.3529 -3.5448 11 1 3.2266 2.4088 -4.3497 12 16 2.2930 -1.4341 0.0006 13 8 3.4931 -1.2049 -0.7250 14 8 1.3529 -2.4404 -0.3499 15 7 2.7434 -1.7394 1.5647 16 6 1.7217 -1.9511 2.5931 17 6 0.7709 -3.0371 2.1600 18 7 1.2362 -4.1162 1.5000 19 8 -0.4129 -2.9401 2.4052 20 6 2.3891 -2.3352 3.9299 21 6 2.4965 -0.9943 4.6991 22 6 1.1735 -0.2794 4.3278 23 6 0.9495 -0.6443 2.8457 24 1 -0.3634 0.0087 1.0276 25 1 -0.3634 0.8855 -0.5214 26 1 -0.3633 -0.8943 -0.5062 27 1 1.6501 2.0043 0.5894 28 1 3.1856 1.1178 0.4343 29 1 3.9682 4.4798 -0.8475 30 1 3.6836 -1.7782 1.8000 31 1 2.1693 -4.1598 1.2387 32 1 0.6387 -4.8510 1.2899 33 1 1.7654 -3.0408 4.4787 34 1 3.3793 -2.7559 3.7548 35 1 3.3561 -0.4196 4.3543 36 1 2.5544 -1.1657 5.7740 37 1 1.2773 0.7994 4.4435 38 1 0.3532 -0.6527 4.9408 39 1 1.3354 0.1476 2.2038 40 1 -0.1130 -0.7957 2.6550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735920754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:39 Heat of formation + Delta-G solvation = -134.501364 kcal Electronic energy + Delta-G solvation = -25567.373296 eV Core-core repulsion = 21928.917813 eV Total energy + Delta-G solvation = -3638.455483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45531 -38.41803 -38.23786 -37.27830 -36.89541 -35.10523 -34.51476 -33.74837 -29.97547 -29.48654 -28.73776 -26.80326 -24.24738 -23.54880 -21.82262 -21.15138 -20.12154 -19.18468 -18.59235 -18.28273 -18.07177 -17.99633 -17.09705 -16.69986 -16.13393 -15.96276 -15.67218 -15.17652 -15.05080 -14.97325 -14.19142 -14.08108 -13.99245 -13.65747 -13.33743 -13.17051 -13.08495 -13.06289 -12.91728 -12.67458 -12.50548 -12.39274 -12.09553 -12.02221 -11.97326 -11.89761 -11.69517 -11.45226 -11.38626 -10.59174 -10.52449 -10.38562 -9.78084 -8.20349 -6.31319 -0.36529 1.38987 1.40694 1.49219 1.51429 1.92451 2.40208 2.46561 2.64748 3.10553 3.37087 3.48125 3.55184 3.92595 3.95901 4.12550 4.41579 4.43407 4.50630 4.55769 4.65903 4.76154 4.81354 4.91019 5.02285 5.09250 5.16791 5.19048 5.26990 5.32100 5.46373 5.49977 5.67330 5.83364 5.93812 6.05826 6.12545 6.41901 6.76300 7.30192 7.37303 8.86906 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.005604 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.833771 B = 4995.055763 C = 5514.844887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.999 5.999 3 C 0.276 3.724 4 C -0.549 4.549 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.276 1.276 12 S 2.788 3.212 13 O -1.005 7.005 14 O -0.990 6.990 15 N -1.105 6.105 16 C 0.159 3.841 17 C 0.515 3.485 18 N -0.816 5.816 19 O -0.572 6.572 20 C -0.105 4.105 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.158 4.158 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.020 0.980 29 H 0.267 0.733 30 H 0.430 0.570 31 H 0.406 0.594 32 H 0.407 0.593 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -12.576 12.058 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.841 5.841 3 C 0.153 3.847 4 C -0.588 4.588 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.778 3.222 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.201 1.201 12 S 2.796 3.204 13 O -0.988 6.988 14 O -0.973 6.973 15 N -0.869 5.869 16 C 0.066 3.934 17 C 0.297 3.703 18 N -0.377 5.377 19 O -0.451 6.451 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.198 4.198 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.268 0.732 31 H 0.236 0.764 32 H 0.239 0.761 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.890 -12.746 11.499 17.270 hybrid contribution 0.612 0.554 -1.106 1.380 sum -1.278 -12.192 10.393 16.072 Atomic orbital electron populations 1.21625 0.78680 1.03110 1.02415 1.57436 1.15185 1.22263 1.89180 1.18574 0.90254 0.80210 0.95697 1.21826 1.36124 1.06589 0.94251 0.93300 1.25680 0.94875 0.96738 1.01217 1.69992 1.37835 1.15734 1.32570 0.85634 0.78120 0.78263 0.80172 1.19298 1.20201 1.20108 1.01621 0.72486 0.72821 0.73447 1.93607 1.48906 1.86030 1.70299 1.93584 1.63808 1.57072 1.82794 1.56020 1.16128 1.88078 1.26704 1.21119 0.87310 0.93886 0.91044 1.20757 0.88536 0.83906 0.77104 1.43491 1.15643 1.20511 1.58079 1.90686 1.17403 1.79032 1.57997 1.22651 1.01846 0.99408 0.90480 1.22554 0.97379 0.94569 1.01151 1.22322 0.98670 1.01085 0.93439 1.23092 1.01234 0.95211 1.00233 0.91480 0.91040 0.91402 0.95385 0.96225 0.92355 0.73209 0.76448 0.76140 0.89066 0.87431 0.90836 0.88631 0.91025 0.90613 0.90177 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.17 10.01 127.77 1.28 4.45 16 2 N -1.00 -40.86 1.58 -543.24 -0.86 -41.73 16 3 C 0.28 13.64 4.46 85.63 0.38 14.02 16 4 C -0.55 -30.87 9.38 25.60 0.24 -30.63 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.82 5.46 84.65 0.46 1.28 16 7 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 8 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 S 2.79 103.28 5.87 -56.49 -0.33 102.95 16 13 O -1.00 -46.03 17.43 -128.00 -2.23 -48.26 16 14 O -0.99 -36.68 12.77 -128.00 -1.63 -38.31 16 15 N -1.10 -28.72 4.82 -152.30 -0.73 -29.45 16 16 C 0.16 3.86 0.97 3.58 0.00 3.86 16 17 C 0.51 14.32 5.23 87.66 0.46 14.77 16 18 N -0.82 -18.40 7.10 -173.53 -1.23 -19.63 16 19 O -0.57 -19.68 16.28 -3.03 -0.05 -19.72 16 20 C -0.10 -1.70 5.99 31.69 0.19 -1.51 16 21 C -0.12 -1.92 6.91 31.91 0.22 -1.70 16 22 C -0.12 -2.46 6.83 31.67 0.22 -2.24 16 23 C -0.16 -4.31 4.25 31.32 0.13 -4.18 16 24 H 0.07 2.17 5.17 -2.38 -0.01 2.16 16 25 H 0.07 2.63 8.08 -2.39 -0.02 2.61 16 26 H 0.07 2.42 6.99 -2.39 -0.02 2.40 16 27 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 28 H 0.02 1.02 7.84 -2.39 -0.02 1.00 16 29 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 30 H 0.43 8.83 8.41 -96.74 -0.81 8.02 16 31 H 0.41 7.65 7.96 -92.71 -0.74 6.92 16 32 H 0.41 8.20 8.93 -92.71 -0.83 7.37 16 33 H 0.09 1.36 7.85 -2.39 -0.02 1.34 16 34 H 0.11 1.21 7.77 -2.39 -0.02 1.19 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 2.50 5.01 -2.39 -0.01 2.49 16 40 H 0.08 2.42 5.32 -2.39 -0.01 2.41 16 Total: -1.00 -73.99 325.63 -2.46 -76.45 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -1.28 Total: 25.86 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 3.59 Total: -1.87 kcal Atomic # 7 Polarization: -141.06 SS G_CDS: -2.54 Total: -143.60 kcal Atomic # 8 Polarization: -102.38 SS G_CDS: -3.92 Total: -106.30 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 103.28 SS G_CDS: -0.33 Total: 102.95 kcal Total: -73.99 -2.46 -76.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735920754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.055 kcal (2) G-P(sol) polarization free energy of solvation -73.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds