Wall clock time and date at job start Fri Apr 10 2020 17:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37103 * 119.99638 * 2 1 4 4 H 1.08000 * 119.99395 * 154.22936 * 3 2 1 5 5 C 1.38943 * 120.00096 * 334.50361 * 3 2 1 6 6 N 1.31422 * 119.99770 * 160.97732 * 5 3 2 7 7 Si 1.86799 * 120.00307 * 340.97779 * 5 3 2 8 8 H 1.48498 * 109.47107 * 87.14340 * 7 5 3 9 9 H 1.48503 * 109.46910 * 207.14257 * 7 5 3 10 10 H 1.48495 * 109.47182 * 327.14206 * 7 5 3 11 11 C 1.34769 * 120.00079 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00126 * 174.27243 * 11 2 1 13 13 C 1.50705 * 119.99980 * 354.26963 * 11 2 1 14 14 H 1.08994 * 109.46939 * 31.98363 * 13 11 2 15 15 O 1.42900 * 109.47172 * 151.98587 * 13 11 2 16 16 C 1.53002 * 109.47158 * 271.98388 * 13 11 2 17 17 H 1.09007 * 109.47033 * 298.12990 * 16 13 11 18 18 O 1.42898 * 109.46964 * 58.12652 * 16 13 11 19 19 C 1.50696 * 109.47473 * 178.12889 * 16 13 11 20 20 N 1.30114 * 124.94623 * 304.69948 * 19 16 13 21 21 C 1.35787 * 109.63955 * 179.86503 * 20 19 16 22 22 C 1.39736 * 133.59709 * 180.10903 * 21 20 19 23 23 C 1.36607 * 119.88361 * 180.30520 * 22 21 20 24 24 C 1.38776 * 120.67092 * 359.97438 * 23 22 21 25 25 C 1.37858 * 120.44949 * 0.06444 * 24 23 22 26 26 C 1.38836 * 119.68659 * 359.91955 * 25 24 23 27 27 N 1.36031 * 124.95427 * 124.99614 * 19 16 13 28 28 H 0.97002 * 126.34849 * 359.94902 * 27 19 16 29 29 H 1.08999 * 109.47727 * 93.09500 * 1 2 3 30 30 H 1.09004 * 109.46843 * 213.09810 * 1 2 3 31 31 H 1.09006 * 109.47089 * 333.08730 * 1 2 3 32 32 H 0.96994 * 120.00048 * 180.02562 * 6 5 3 33 33 H 0.96701 * 113.99955 * 59.99758 * 15 13 11 34 34 H 0.96692 * 114.00209 * 67.46840 * 18 16 13 35 35 H 1.08006 * 120.05939 * 0.32309 * 22 21 20 36 36 H 1.08004 * 119.66045 * 180.02562 * 23 22 21 37 37 H 1.07993 * 119.77318 * 180.02562 * 24 23 22 38 38 H 1.07996 * 120.15144 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1499 1.2339 0.4067 5 6 1.5572 2.3321 -0.5180 6 7 2.0248 3.5174 -0.1964 7 14 0.0950 2.1862 -1.6712 8 1 -1.1579 2.1235 -0.8766 9 1 0.0530 3.3682 -2.5692 10 1 0.2275 0.9510 -2.4847 11 6 2.1389 -1.1671 -0.0005 12 8 3.3472 -1.1697 -0.1054 13 6 1.3910 -2.4691 0.1292 14 1 0.4107 -2.3730 -0.3374 15 8 2.1274 -3.5081 -0.5191 16 6 1.2194 -2.8133 1.6101 17 1 2.1997 -2.9421 2.0691 18 8 0.5211 -1.7540 2.2675 19 6 0.4318 -4.0914 1.7408 20 7 -0.7431 -4.2992 1.2217 21 6 -1.1624 -5.5537 1.5290 22 6 -2.3178 -6.2825 1.2351 23 6 -2.4558 -7.5580 1.7045 24 6 -1.4580 -8.1414 2.4727 25 6 -0.3100 -7.4409 2.7758 26 6 -0.1521 -6.1437 2.3070 27 7 0.8429 -5.1938 2.4235 28 1 1.6802 -5.2942 2.9028 29 1 -0.3634 -0.0555 -1.0261 30 1 -0.3633 -0.8610 0.5612 31 1 -0.3633 0.9164 0.4652 32 1 1.6104 4.3166 -0.5577 33 1 3.0119 -3.6495 -0.1547 34 1 -0.3998 -1.6577 1.9890 35 1 -3.1002 -5.8384 0.6375 36 1 -3.3501 -8.1182 1.4748 37 1 -1.5821 -9.1508 2.8359 38 1 0.4632 -7.8995 3.3743 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779619952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:43 Heat of formation + Delta-G solvation = -65.113214 kcal Electronic energy + Delta-G solvation = -25169.752147 eV Core-core repulsion = 21398.861609 eV Total energy + Delta-G solvation = -3770.890538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.26345 -41.21978 -38.89628 -37.82135 -37.52114 -36.46264 -34.21231 -34.15381 -31.61977 -30.92848 -29.78765 -28.44252 -27.34678 -25.38801 -23.37438 -23.16940 -21.99384 -21.18504 -19.34371 -19.23520 -18.70920 -18.52131 -18.08037 -17.83451 -17.01778 -16.85691 -16.28275 -15.95840 -15.63901 -15.25663 -15.22343 -14.85251 -14.71914 -14.62676 -14.36352 -14.03667 -13.98479 -13.73314 -12.92428 -12.82968 -12.69884 -12.55060 -12.45649 -12.43835 -12.33574 -11.78492 -11.76875 -11.37624 -11.13737 -11.03177 -10.33899 -9.87174 -9.38492 -9.14164 -8.52886 -6.11064 -0.08242 0.56661 1.20409 1.30144 1.43921 1.50142 1.68805 1.87171 2.15854 2.51888 2.76801 2.90412 2.94547 3.04506 3.39627 3.49082 3.59585 3.72269 3.77960 4.11167 4.19627 4.22491 4.31897 4.40158 4.44149 4.51512 4.52698 4.69416 4.88056 5.13318 5.42629 5.43167 5.54773 5.59737 5.95073 5.95585 6.28804 6.29760 6.37559 6.49391 6.75265 6.83965 7.23022 7.70901 8.63960 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.003765 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.535881 B = 7435.479377 C = 7893.625505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.456 5.456 3 C -0.334 4.334 4 H 0.053 0.947 5 C 0.008 3.992 6 N -0.910 5.910 7 Si 0.956 3.044 8 H -0.230 1.230 9 H -0.291 1.291 10 H -0.265 1.265 11 C 0.430 3.570 12 O -0.613 6.613 13 C 0.094 3.906 14 H 0.130 0.870 15 O -0.538 6.538 16 C 0.179 3.821 17 H 0.131 0.869 18 O -0.537 6.537 19 C 0.256 3.744 20 N -0.501 5.501 21 C 0.011 3.989 22 C -0.082 4.082 23 C -0.124 4.124 24 C -0.095 4.095 25 C -0.118 4.118 26 C 0.037 3.963 27 N -0.577 5.577 28 H 0.437 0.563 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.282 0.718 33 H 0.390 0.610 34 H 0.394 0.606 35 H 0.133 0.867 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 -23.778 6.642 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.177 5.177 3 C -0.462 4.462 4 H 0.071 0.929 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.779 3.221 8 H -0.153 1.153 9 H -0.219 1.219 10 H -0.190 1.190 11 C 0.219 3.781 12 O -0.499 6.499 13 C 0.029 3.971 14 H 0.147 0.853 15 O -0.345 6.345 16 C 0.117 3.883 17 H 0.149 0.851 18 O -0.345 6.345 19 C -0.013 4.013 20 N -0.224 5.224 21 C -0.107 4.107 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.115 4.115 25 C -0.139 4.139 26 C -0.073 4.073 27 N -0.190 5.190 28 H 0.278 0.722 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.241 0.759 34 H 0.246 0.754 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.786 -22.924 6.044 26.475 hybrid contribution 0.947 0.252 0.142 0.990 sum -10.839 -22.671 6.186 25.879 Atomic orbital electron populations 1.22552 0.80560 1.05150 1.02233 1.43682 1.05828 1.04710 1.63457 1.18845 1.01398 0.85251 1.40667 0.92859 1.26112 1.01876 0.93708 0.97741 1.69838 1.44020 0.98601 1.42381 0.85942 0.79616 0.77390 0.79132 1.15341 1.21852 1.19046 1.21375 0.88304 0.86262 0.82137 1.90526 1.16192 1.87308 1.55910 1.22326 0.96471 0.84698 0.93581 0.85268 1.86570 1.32980 1.52790 1.62112 1.20765 0.95146 0.80181 0.92243 0.85150 1.86796 1.30280 1.50979 1.66418 1.23786 0.92802 0.90752 0.93937 1.70191 1.10538 1.17256 1.24414 1.19520 0.97550 0.91507 1.02164 1.20325 0.94910 0.94622 1.00337 1.21066 1.00819 0.94116 0.98357 1.21383 0.92008 1.00914 0.97166 1.20383 1.00630 0.90045 1.02794 1.19264 0.90748 0.93761 1.03541 1.42880 1.19345 1.11529 1.45223 0.72179 0.92079 0.88132 0.89784 0.90861 0.75941 0.75365 0.84895 0.82400 0.81807 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 7.13 127.77 0.91 2.29 16 2 N -0.46 -22.18 2.77 -658.88 -1.82 -24.01 16 3 C -0.33 -19.75 9.61 84.04 0.81 -18.94 16 4 H 0.05 3.69 7.73 -2.91 -0.02 3.66 16 5 C 0.01 0.42 5.25 84.92 0.45 0.87 16 6 N -0.91 -54.28 13.96 21.66 0.30 -53.98 16 7 Si 0.96 41.59 23.97 68.60 1.64 43.23 16 8 H -0.23 -8.43 6.56 99.48 0.65 -7.78 16 9 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.27 -11.39 6.53 99.48 0.65 -10.74 16 11 C 0.43 20.02 6.47 87.66 0.57 20.58 16 12 O -0.61 -33.63 16.18 14.28 0.23 -33.40 16 13 C 0.09 3.19 2.51 29.85 0.07 3.27 16 14 H 0.13 4.23 6.52 -2.39 -0.02 4.21 16 15 O -0.54 -17.87 12.87 -131.64 -1.69 -19.56 16 16 C 0.18 5.05 3.30 29.85 0.10 5.14 16 17 H 0.13 3.36 8.14 -2.38 -0.02 3.34 16 18 O -0.54 -15.99 11.80 -148.98 -1.76 -17.75 16 19 C 0.26 6.63 6.59 137.92 0.91 7.54 16 20 N -0.50 -14.37 11.19 -179.98 -2.01 -16.38 16 21 C 0.01 0.28 7.23 39.44 0.29 0.56 16 22 C -0.08 -1.68 10.05 22.25 0.22 -1.46 16 23 C -0.12 -1.72 9.96 22.02 0.22 -1.50 16 24 C -0.10 -1.16 10.03 22.31 0.22 -0.94 16 25 C -0.12 -1.80 10.07 22.32 0.22 -1.57 16 26 C 0.04 0.81 7.30 38.86 0.28 1.09 16 27 N -0.58 -11.93 6.23 -179.24 -1.12 -13.05 16 28 H 0.44 6.13 8.96 -92.71 -0.83 5.29 16 29 H 0.06 2.16 5.34 -2.39 -0.01 2.14 16 30 H 0.10 2.92 3.45 -2.38 -0.01 2.91 16 31 H 0.08 3.16 5.91 -2.38 -0.01 3.14 16 32 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 33 H 0.39 11.02 8.63 -74.06 -0.64 10.38 16 34 H 0.39 9.70 6.90 -74.06 -0.51 9.19 16 35 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 38 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -81.88 316.81 -1.88 -83.76 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -0.93 Total: 34.18 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 5.28 Total: 16.95 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -4.65 Total: -107.41 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: -3.22 Total: -70.71 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.64 Total: 43.23 kcal Total: -81.88 -1.88 -83.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779619952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.647 kcal (2) G-P(sol) polarization free energy of solvation -81.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds