Wall clock time and date at job start Fri Apr 10 2020 17:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37093 * 120.00108 * 2 1 4 4 H 1.07996 * 119.99733 * 201.25600 * 3 2 1 5 5 C 1.38948 * 120.00078 * 21.26049 * 3 2 1 6 6 N 1.31414 * 120.00036 * 12.25111 * 5 3 2 7 7 Si 1.86799 * 120.00059 * 192.25507 * 5 3 2 8 8 H 1.48504 * 109.47179 * 85.05351 * 7 5 3 9 9 H 1.48499 * 109.46966 * 205.04831 * 7 5 3 10 10 H 1.48493 * 109.47032 * 325.04813 * 7 5 3 11 11 C 1.34777 * 119.99540 * 180.02562 * 2 1 3 12 12 O 1.21297 * 119.99732 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00634 * 359.97438 * 11 2 1 14 14 H 1.09003 * 109.46868 * 54.99417 * 13 11 2 15 15 O 1.42899 * 109.47239 * 175.00120 * 13 11 2 16 16 C 1.53006 * 109.47014 * 295.00278 * 13 11 2 17 17 H 1.08997 * 109.47154 * 64.99393 * 16 13 11 18 18 O 1.42906 * 109.46483 * 304.99404 * 16 13 11 19 19 C 1.50701 * 109.47055 * 185.00140 * 16 13 11 20 20 N 1.30105 * 124.94514 * 305.01888 * 19 16 13 21 21 C 1.35787 * 109.64534 * 179.97438 * 20 19 16 22 22 C 1.39733 * 133.61128 * 179.97438 * 21 20 19 23 23 C 1.36606 * 119.89355 * 180.02562 * 22 21 20 24 24 C 1.38779 * 120.66446 * 359.97438 * 23 22 21 25 25 C 1.37856 * 120.45147 * 0.04104 * 24 23 22 26 26 C 1.38830 * 119.68886 * 359.96388 * 25 24 23 27 27 N 1.36029 * 124.95369 * 124.71822 * 19 16 13 28 28 H 0.97009 * 126.34786 * 0.02562 * 27 19 16 29 29 H 1.09000 * 109.46684 * 272.80740 * 1 2 3 30 30 H 1.08997 * 109.47304 * 32.81117 * 1 2 3 31 31 H 1.08999 * 109.47273 * 152.81532 * 1 2 3 32 32 H 0.97003 * 120.00179 * 180.02562 * 6 5 3 33 33 H 0.96687 * 114.00585 * 60.00171 * 15 13 11 34 34 H 0.96703 * 114.00184 * 300.00042 * 18 16 13 35 35 H 1.08009 * 120.05678 * 359.97438 * 22 21 20 36 36 H 1.07995 * 119.67083 * 180.02562 * 23 22 21 37 37 H 1.07997 * 119.77383 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.15478 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1754 1.2190 -0.3391 5 6 1.5267 2.3496 0.4363 6 7 0.3772 2.2806 1.0694 7 14 2.3221 4.0106 0.1230 8 1 1.9494 4.4901 -1.2321 9 1 1.8507 4.9848 1.1398 10 1 3.7983 3.8771 0.2123 11 6 2.1388 -1.1673 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.6928 -2.4920 -0.8420 15 8 2.3095 -3.5559 -0.1185 16 6 0.6029 -2.6095 1.3071 17 1 -0.1623 -1.8347 1.3556 18 8 1.4959 -2.4671 2.4137 19 6 -0.0515 -3.9659 1.3611 20 7 -0.8467 -4.4465 0.4503 21 6 -1.2565 -5.6896 0.8119 22 6 -2.0953 -6.6379 0.2206 23 6 -2.3207 -7.8314 0.8457 24 6 -1.7238 -8.1151 2.0660 25 6 -0.8929 -7.1946 2.6682 26 6 -0.6522 -5.9762 2.0476 27 7 0.1078 -4.8686 2.3662 28 1 0.6527 -4.7543 3.1606 29 1 -0.3633 0.0503 1.0265 30 1 -0.3634 0.8637 -0.5568 31 1 -0.3634 -0.9141 -0.4695 32 1 -0.0585 3.0921 1.3737 33 1 2.9571 -3.6004 0.5981 34 1 2.2043 -3.1251 2.4346 35 1 -2.5653 -6.4273 -0.7288 36 1 -2.9694 -8.5619 0.3853 37 1 -1.9118 -9.0634 2.5474 38 1 -0.4312 -7.4202 3.6181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779619954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:46 Heat of formation + Delta-G solvation = -43.875629 kcal Electronic energy + Delta-G solvation = -25176.344637 eV Core-core repulsion = 21406.375029 eV Total energy + Delta-G solvation = -3769.969608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.25793 -39.52290 -37.66253 -36.74500 -35.53809 -34.52745 -33.22301 -31.87124 -30.49773 -30.05526 -28.53850 -26.28811 -25.40074 -23.67932 -22.47615 -22.07060 -20.81073 -19.61344 -18.30293 -17.63373 -17.26646 -17.01363 -16.62267 -16.01588 -15.79594 -15.07454 -14.82754 -14.45856 -14.36093 -14.10340 -13.98296 -13.83535 -13.03077 -12.91318 -12.67856 -12.16273 -11.88542 -11.82502 -11.75226 -11.65553 -11.30743 -11.17002 -11.03800 -10.87762 -10.75496 -10.39276 -10.33221 -10.06612 -9.94721 -9.08242 -8.51406 -8.39427 -8.15569 -7.78039 -6.37098 -3.92797 0.84561 1.42294 2.65739 2.72416 3.13997 3.23187 3.27948 3.67466 3.79646 3.81036 4.06496 4.29401 4.43981 4.55390 4.77748 4.87709 4.88757 4.97475 5.15187 5.21073 5.28327 5.33954 5.46563 5.62024 5.66405 5.90517 5.95934 6.20705 6.27253 6.38648 6.43570 6.75850 6.76914 7.12194 7.18190 7.32689 7.51703 7.70035 7.85288 8.04829 8.39652 9.10265 9.32802 9.84892 10.65919 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.003459 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.582353 B = 8092.095840 C = 8301.004579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.432 5.432 3 C -0.307 4.307 4 H 0.100 0.900 5 C 0.032 3.968 6 N -0.879 5.879 7 Si 0.928 3.072 8 H -0.276 1.276 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.423 3.577 12 O -0.581 6.581 13 C 0.080 3.920 14 H 0.129 0.871 15 O -0.534 6.534 16 C 0.154 3.846 17 H 0.150 0.850 18 O -0.531 6.531 19 C 0.273 3.727 20 N -0.478 5.478 21 C 0.052 3.948 22 C -0.063 4.063 23 C -0.131 4.131 24 C -0.107 4.107 25 C -0.111 4.111 26 C 0.046 3.954 27 N -0.591 5.591 28 H 0.423 0.577 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.269 0.731 33 H 0.370 0.630 34 H 0.370 0.630 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -16.404 3.944 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.151 5.151 3 C -0.435 4.435 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.518 5.518 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.210 3.790 12 O -0.466 6.466 13 C 0.015 3.985 14 H 0.146 0.854 15 O -0.337 6.337 16 C 0.092 3.908 17 H 0.167 0.833 18 O -0.335 6.335 19 C 0.005 3.995 20 N -0.199 5.199 21 C -0.067 4.067 22 C -0.083 4.083 23 C -0.152 4.152 24 C -0.126 4.126 25 C -0.132 4.132 26 C -0.064 4.064 27 N -0.202 5.202 28 H 0.263 0.737 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.218 0.782 34 H 0.217 0.783 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.879 -15.462 2.845 17.160 hybrid contribution 1.222 0.219 1.473 1.926 sum -5.657 -15.243 4.318 16.823 Atomic orbital electron populations 1.21736 0.81188 0.99342 1.02014 1.43574 1.05458 1.04783 1.61314 1.19678 0.98976 0.83461 1.41400 0.88187 1.25342 0.96458 1.00100 0.95214 1.69992 1.16906 1.29330 1.35559 0.85905 0.79612 0.80934 0.78044 1.20226 1.20914 1.19394 1.20254 0.88426 0.84917 0.85399 1.90532 1.13476 1.86374 1.56224 1.22414 0.91035 0.87582 0.97436 0.85376 1.86624 1.46641 1.47983 1.52499 1.21508 0.92129 0.89247 0.87916 0.83260 1.86840 1.42502 1.57614 1.46511 1.24311 0.96456 0.94069 0.84640 1.70344 1.14544 1.08798 1.26197 1.19133 1.00899 0.93226 0.93456 1.20045 0.96602 0.91768 0.99841 1.20621 1.01609 0.96927 0.96032 1.20847 0.97231 0.98784 0.95776 1.19944 1.01686 0.91121 1.00435 1.18911 0.98537 0.90612 0.98375 1.42919 1.41528 1.13730 1.22064 0.73729 0.91785 0.90662 0.95164 0.92093 0.78237 0.78268 0.85297 0.85468 0.85439 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.18 7.16 59.85 0.43 2.61 16 2 N -0.43 -10.78 3.02 -122.20 -0.37 -11.15 16 3 C -0.31 -8.43 9.31 -14.94 -0.14 -8.57 16 4 H 0.10 2.89 7.39 -52.49 -0.39 2.50 16 5 C 0.03 0.84 5.11 -17.47 -0.09 0.75 16 6 N -0.88 -22.81 10.58 55.50 0.59 -22.22 16 7 Si 0.93 20.49 29.57 -169.99 -5.03 15.46 16 8 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 C 0.42 10.02 6.56 -10.99 -0.07 9.95 16 12 O -0.58 -15.71 16.01 -14.32 -0.23 -15.94 16 13 C 0.08 1.47 2.44 -27.88 -0.07 1.41 16 14 H 0.13 2.37 7.13 -51.93 -0.37 2.00 16 15 O -0.53 -9.51 12.47 -59.70 -0.74 -10.25 16 16 C 0.15 2.49 3.13 -27.88 -0.09 2.40 16 17 H 0.15 2.56 5.28 -51.93 -0.27 2.29 16 18 O -0.53 -8.23 12.29 -40.09 -0.49 -8.72 16 19 C 0.27 4.14 6.68 -154.83 -1.03 3.10 16 20 N -0.48 -7.95 11.21 -8.24 -0.09 -8.04 16 21 C 0.05 0.77 7.23 -84.70 -0.61 0.16 16 22 C -0.06 -0.77 10.05 -39.61 -0.40 -1.17 16 23 C -0.13 -1.27 9.96 -39.97 -0.40 -1.66 16 24 C -0.11 -0.97 10.03 -39.52 -0.40 -1.37 16 25 C -0.11 -1.14 10.07 -39.50 -0.40 -1.54 16 26 C 0.05 0.60 7.31 -83.99 -0.61 -0.01 16 27 N -0.59 -7.34 6.05 -8.00 -0.05 -7.39 16 28 H 0.42 3.99 8.49 -40.82 -0.35 3.65 16 29 H 0.06 1.42 6.68 -51.93 -0.35 1.07 16 30 H 0.07 1.72 7.04 -51.93 -0.37 1.35 16 31 H 0.03 0.55 5.83 -51.93 -0.30 0.24 16 32 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 33 H 0.37 5.55 7.58 45.56 0.35 5.90 16 34 H 0.37 4.25 7.74 45.56 0.35 4.60 16 35 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -34.12 321.23 -7.97 -42.10 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -2.52 Total: 15.26 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -3.88 Total: 6.05 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.08 Total: -48.80 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -1.47 Total: -34.91 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.12 -7.97 -42.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779619954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.778 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds