Wall clock time and date at job start Fri Apr 10 2020 17:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37093 * 120.00108 * 2 1 4 4 H 1.07996 * 119.99733 * 201.25600 * 3 2 1 5 5 C 1.38948 * 120.00078 * 21.26049 * 3 2 1 6 6 N 1.31414 * 120.00036 * 12.25111 * 5 3 2 7 7 Si 1.86799 * 120.00059 * 192.25507 * 5 3 2 8 8 H 1.48504 * 109.47179 * 85.05351 * 7 5 3 9 9 H 1.48499 * 109.46966 * 205.04831 * 7 5 3 10 10 H 1.48493 * 109.47032 * 325.04813 * 7 5 3 11 11 C 1.34777 * 119.99540 * 180.02562 * 2 1 3 12 12 O 1.21297 * 119.99732 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00634 * 359.97438 * 11 2 1 14 14 H 1.09003 * 109.46868 * 54.99417 * 13 11 2 15 15 O 1.42899 * 109.47239 * 175.00120 * 13 11 2 16 16 C 1.53006 * 109.47014 * 295.00278 * 13 11 2 17 17 H 1.08997 * 109.47154 * 64.99393 * 16 13 11 18 18 O 1.42906 * 109.46483 * 304.99404 * 16 13 11 19 19 C 1.50701 * 109.47055 * 185.00140 * 16 13 11 20 20 N 1.30105 * 124.94514 * 305.01888 * 19 16 13 21 21 C 1.35787 * 109.64534 * 179.97438 * 20 19 16 22 22 C 1.39733 * 133.61128 * 179.97438 * 21 20 19 23 23 C 1.36606 * 119.89355 * 180.02562 * 22 21 20 24 24 C 1.38779 * 120.66446 * 359.97438 * 23 22 21 25 25 C 1.37856 * 120.45147 * 0.04104 * 24 23 22 26 26 C 1.38830 * 119.68886 * 359.96388 * 25 24 23 27 27 N 1.36029 * 124.95369 * 124.71822 * 19 16 13 28 28 H 0.97009 * 126.34786 * 0.02562 * 27 19 16 29 29 H 1.09000 * 109.46684 * 272.80740 * 1 2 3 30 30 H 1.08997 * 109.47304 * 32.81117 * 1 2 3 31 31 H 1.08999 * 109.47273 * 152.81532 * 1 2 3 32 32 H 0.97003 * 120.00179 * 180.02562 * 6 5 3 33 33 H 0.96687 * 114.00585 * 60.00171 * 15 13 11 34 34 H 0.96703 * 114.00184 * 300.00042 * 18 16 13 35 35 H 1.08009 * 120.05678 * 359.97438 * 22 21 20 36 36 H 1.07995 * 119.67083 * 180.02562 * 23 22 21 37 37 H 1.07997 * 119.77383 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.15478 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1754 1.2190 -0.3391 5 6 1.5267 2.3496 0.4363 6 7 0.3772 2.2806 1.0694 7 14 2.3221 4.0106 0.1230 8 1 1.9494 4.4901 -1.2321 9 1 1.8507 4.9848 1.1398 10 1 3.7983 3.8771 0.2123 11 6 2.1388 -1.1673 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.6928 -2.4920 -0.8420 15 8 2.3095 -3.5559 -0.1185 16 6 0.6029 -2.6095 1.3071 17 1 -0.1623 -1.8347 1.3556 18 8 1.4959 -2.4671 2.4137 19 6 -0.0515 -3.9659 1.3611 20 7 -0.8467 -4.4465 0.4503 21 6 -1.2565 -5.6896 0.8119 22 6 -2.0953 -6.6379 0.2206 23 6 -2.3207 -7.8314 0.8457 24 6 -1.7238 -8.1151 2.0660 25 6 -0.8929 -7.1946 2.6682 26 6 -0.6522 -5.9762 2.0476 27 7 0.1078 -4.8686 2.3662 28 1 0.6527 -4.7543 3.1606 29 1 -0.3633 0.0503 1.0265 30 1 -0.3634 0.8637 -0.5568 31 1 -0.3634 -0.9141 -0.4695 32 1 -0.0585 3.0921 1.3737 33 1 2.9571 -3.6004 0.5981 34 1 2.2043 -3.1251 2.4346 35 1 -2.5653 -6.4273 -0.7288 36 1 -2.9694 -8.5619 0.3853 37 1 -1.9118 -9.0634 2.5474 38 1 -0.4312 -7.4202 3.6181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779619954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:45 Heat of formation + Delta-G solvation = -70.857439 kcal Electronic energy + Delta-G solvation = -25177.514656 eV Core-core repulsion = 21406.375029 eV Total energy + Delta-G solvation = -3771.139627 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.25935 -41.13520 -38.97892 -37.89660 -37.08385 -36.32105 -34.23724 -33.78241 -31.77089 -30.90785 -29.78850 -28.08666 -27.00419 -25.29546 -23.37691 -23.01751 -21.92591 -21.34147 -19.41886 -18.97674 -18.82974 -18.57696 -17.90060 -17.47147 -17.04822 -16.63192 -16.23003 -15.78057 -15.68360 -15.39417 -15.19329 -14.83695 -14.60909 -14.43631 -14.15071 -13.69164 -13.52478 -13.13258 -12.90951 -12.84935 -12.70467 -12.62323 -12.51409 -12.38725 -12.29903 -12.13765 -11.77212 -11.44616 -11.03674 -11.01327 -10.28528 -9.75816 -9.35019 -9.11399 -8.35165 -6.00174 -0.05003 0.57867 1.34662 1.41891 1.52744 1.59301 1.72853 1.98304 2.25129 2.63794 2.84938 2.92381 3.04207 3.12297 3.31446 3.50661 3.61702 3.88927 3.98502 4.15366 4.21181 4.34387 4.46097 4.50702 4.52593 4.56656 4.88064 4.96702 5.14034 5.32145 5.43125 5.43865 5.56737 5.60202 5.96619 6.01022 6.18970 6.33074 6.37063 6.48480 6.81918 7.11119 7.38745 7.91397 8.65824 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.003459 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.582353 B = 8092.095840 C = 8301.004579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.446 5.446 3 C -0.347 4.347 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.890 5.890 7 Si 0.990 3.010 8 H -0.266 1.266 9 H -0.272 1.272 10 H -0.276 1.276 11 C 0.417 3.583 12 O -0.622 6.622 13 C 0.098 3.902 14 H 0.130 0.870 15 O -0.537 6.537 16 C 0.172 3.828 17 H 0.138 0.862 18 O -0.542 6.542 19 C 0.260 3.740 20 N -0.507 5.507 21 C 0.010 3.990 22 C -0.085 4.085 23 C -0.122 4.122 24 C -0.096 4.096 25 C -0.116 4.116 26 C 0.035 3.965 27 N -0.578 5.578 28 H 0.436 0.564 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.275 0.725 33 H 0.382 0.618 34 H 0.387 0.613 35 H 0.131 0.869 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 -18.364 4.979 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.164 5.164 3 C -0.475 4.475 4 H 0.091 0.909 5 C -0.200 4.200 6 N -0.528 5.528 7 Si 0.813 3.187 8 H -0.191 1.191 9 H -0.197 1.197 10 H -0.201 1.201 11 C 0.206 3.794 12 O -0.510 6.510 13 C 0.034 3.966 14 H 0.148 0.852 15 O -0.343 6.343 16 C 0.110 3.890 17 H 0.155 0.845 18 O -0.348 6.348 19 C -0.008 4.008 20 N -0.229 5.229 21 C -0.108 4.108 22 C -0.105 4.105 23 C -0.142 4.142 24 C -0.115 4.115 25 C -0.137 4.137 26 C -0.075 4.075 27 N -0.191 5.191 28 H 0.277 0.723 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.232 0.768 34 H 0.237 0.763 35 H 0.149 0.851 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.997 -17.444 3.906 19.584 hybrid contribution 1.524 0.650 1.185 2.037 sum -6.473 -16.795 5.091 18.705 Atomic orbital electron populations 1.21666 0.79470 1.00286 1.01658 1.43783 1.06607 1.04659 1.61380 1.19627 0.98698 0.85411 1.43752 0.90872 1.26062 0.96926 1.02723 0.94338 1.70058 1.17319 1.30439 1.34982 0.85002 0.78211 0.76919 0.78537 1.19135 1.19665 1.20123 1.21130 0.88285 0.86267 0.83733 1.90488 1.15443 1.87373 1.57693 1.22161 0.90616 0.84745 0.99103 0.85236 1.86596 1.47026 1.47191 1.53449 1.21031 0.91539 0.89973 0.86470 0.84465 1.86800 1.43194 1.58713 1.46069 1.23768 0.97344 0.93943 0.85780 1.70226 1.15224 1.10167 1.27288 1.19584 1.02795 0.93348 0.95093 1.20322 0.97022 0.92569 1.00552 1.21058 1.00945 0.96230 0.95980 1.21379 0.95319 0.99699 0.95147 1.20380 1.01827 0.90048 1.01450 1.19270 0.98538 0.91478 0.98194 1.42764 1.41354 1.13101 1.21858 0.72280 0.92484 0.92174 0.91890 0.91515 0.76820 0.76298 0.85080 0.82291 0.81652 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.93 7.16 127.77 0.92 5.85 16 2 N -0.45 -22.87 3.02 -658.90 -1.99 -24.86 16 3 C -0.35 -19.67 9.31 84.04 0.78 -18.89 16 4 H 0.07 4.44 7.39 -2.91 -0.02 4.42 16 5 C 0.00 0.11 5.11 84.93 0.43 0.55 16 6 N -0.89 -46.34 10.58 21.66 0.23 -46.11 16 7 Si 0.99 42.19 29.57 68.60 2.03 44.22 16 8 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 C 0.42 20.31 6.56 87.66 0.57 20.88 16 12 O -0.62 -34.79 16.01 15.91 0.25 -34.53 16 13 C 0.10 3.67 2.44 29.85 0.07 3.74 16 14 H 0.13 4.83 7.13 -2.39 -0.02 4.81 16 15 O -0.54 -19.14 12.47 -125.58 -1.57 -20.70 16 16 C 0.17 5.59 3.13 29.85 0.09 5.68 16 17 H 0.14 4.78 5.28 -2.39 -0.01 4.77 16 18 O -0.54 -16.71 12.29 -144.34 -1.77 -18.49 16 19 C 0.26 7.82 6.68 137.93 0.92 8.74 16 20 N -0.51 -16.93 11.21 -179.97 -2.02 -18.95 16 21 C 0.01 0.29 7.23 39.45 0.29 0.58 16 22 C -0.09 -1.98 10.05 22.25 0.22 -1.75 16 23 C -0.12 -1.95 9.96 22.02 0.22 -1.73 16 24 C -0.10 -1.34 10.03 22.31 0.22 -1.12 16 25 C -0.12 -2.02 10.07 22.32 0.22 -1.79 16 26 C 0.04 0.87 7.31 38.86 0.28 1.15 16 27 N -0.58 -13.77 6.05 -179.23 -1.08 -14.85 16 28 H 0.44 7.62 8.49 -92.70 -0.79 6.84 16 29 H 0.06 2.57 6.68 -2.39 -0.02 2.56 16 30 H 0.06 2.79 7.04 -2.39 -0.02 2.77 16 31 H 0.06 2.31 5.83 -2.39 -0.01 2.29 16 32 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 33 H 0.38 11.41 7.58 -74.07 -0.56 10.85 16 34 H 0.39 8.69 7.74 -74.06 -0.57 8.12 16 35 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -75.69 321.23 -1.43 -77.11 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -0.76 Total: 35.27 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 5.25 Total: 21.88 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -4.86 Total: -104.76 kcal Atomic # 8 Polarization: -70.64 SS G_CDS: -3.08 Total: -73.73 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -75.69 -1.43 -77.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779619954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.254 kcal (2) G-P(sol) polarization free energy of solvation -75.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds