Wall clock time and date at job start Fri Apr 10 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46970 * 2 1 4 4 O 1.45193 * 109.47164 * 119.99845 * 2 1 3 5 5 C 1.34770 * 117.00532 * 269.99884 * 4 2 1 6 6 O 1.21538 * 119.99787 * 0.02562 * 5 4 2 7 7 C 1.47226 * 120.00243 * 179.97438 * 5 4 2 8 8 C 1.38207 * 126.48030 * 359.69441 * 7 5 4 9 9 N 1.34382 * 108.37794 * 179.86295 * 8 7 5 10 10 H 0.97007 * 125.37895 * 180.15000 * 9 8 7 11 11 C 1.37719 * 109.24273 * 0.40326 * 9 8 7 12 12 C 1.43200 * 125.83467 * 179.72724 * 11 9 8 13 13 N 8.47611 * 107.50774 * 93.22612 * 2 1 3 14 14 C 1.36323 * 108.33094 * 359.74941 * 11 9 8 15 15 C 1.50693 * 109.47158 * 240.00413 * 2 1 3 16 16 O 1.21280 * 119.99890 * 256.02828 * 15 2 1 17 17 N 1.34781 * 120.00301 * 76.02043 * 15 2 1 18 18 C 1.46498 * 119.99701 * 5.37093 * 17 15 2 19 19 C 1.46505 * 120.00072 * 185.36473 * 17 15 2 20 20 C 1.50698 * 109.46727 * 90.00473 * 19 17 15 21 21 H 1.07993 * 120.00154 * 359.97438 * 20 19 17 22 22 C 1.37872 * 119.99512 * 179.97438 * 20 19 17 23 23 N 1.31516 * 120.00181 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 120.00244 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.46876 * 90.00038 * 24 22 20 26 26 H 1.48506 * 109.46995 * 209.99932 * 24 22 20 27 27 H 1.48491 * 109.46755 * 329.99886 * 24 22 20 28 28 H 1.08998 * 109.47092 * 186.13554 * 1 2 3 29 29 H 1.09000 * 109.47285 * 66.13404 * 1 2 3 30 30 H 1.09003 * 109.46841 * 306.13541 * 1 2 3 31 31 H 1.07999 * 125.80695 * 359.97438 * 8 7 5 32 32 H 1.08004 * 126.49882 * 179.97438 * 14 11 9 33 33 H 1.09003 * 109.47021 * 84.81752 * 18 17 15 34 34 H 1.09000 * 109.46647 * 204.81520 * 18 17 15 35 35 H 1.08993 * 109.47435 * 324.82000 * 18 17 15 36 36 H 1.09002 * 109.46813 * 210.00918 * 19 17 15 37 37 H 1.08998 * 109.46595 * 330.00359 * 19 17 15 38 38 H 0.96995 * 120.00550 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2180 0.0670 2.2855 6 8 1.9970 1.2617 2.2549 7 6 2.7076 -0.5594 3.5246 8 6 2.9943 -1.8986 3.7106 9 7 3.4169 -2.0698 4.9747 10 1 3.6857 -2.9151 5.3674 11 6 3.4025 -0.8566 5.6264 12 6 3.7794 -0.6327 6.9896 13 7 4.0799 -0.4549 8.0706 14 6 2.9677 0.0946 4.7520 15 6 2.0324 -0.7103 -1.2304 16 8 2.4736 -1.8366 -1.1428 17 7 1.9912 -0.0940 -2.4284 18 6 1.5689 1.3060 -2.5177 19 6 2.3688 -0.8241 -3.6411 20 6 1.1505 -1.4916 -4.2253 21 1 0.1912 -1.3833 -3.7414 22 6 1.2609 -2.2407 -5.3775 23 7 0.1979 -2.8237 -5.8872 24 14 2.9205 -2.4287 -6.2141 25 1 3.6176 -3.6209 -5.6685 26 1 2.7216 -2.5975 -7.6761 27 1 3.7414 -1.2171 -5.9629 28 1 -0.3633 -1.0218 0.1098 29 1 -0.3634 0.4158 -0.9398 30 1 -0.3633 0.6060 0.8300 31 1 2.8972 -2.6749 2.9661 32 1 2.8446 1.1477 4.9573 33 1 2.4229 1.9559 -2.3267 34 1 1.1774 1.5043 -3.5155 35 1 0.7925 1.4993 -1.7776 36 1 2.7861 -0.1283 -4.3690 37 1 3.1136 -1.5802 -3.3929 38 1 0.2753 -3.3504 -6.6980 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786902821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:53 Heat of formation + Delta-G solvation = -31.388824 kcal Electronic energy + Delta-G solvation = -23892.495714 eV Core-core repulsion = 20123.067575 eV Total energy + Delta-G solvation = -3769.428139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.97485 -40.35247 -38.89845 -36.91523 -36.30287 -35.00644 -32.81172 -32.18728 -31.54048 -30.26883 -28.40356 -26.19283 -25.04959 -23.71296 -22.99591 -21.89395 -20.55179 -19.91324 -18.80489 -17.45802 -17.00655 -16.69214 -16.29866 -16.04887 -15.71440 -15.28080 -15.05161 -14.67707 -14.64384 -14.13144 -13.66529 -13.53637 -13.40262 -13.25848 -13.08787 -12.83439 -12.69306 -12.40933 -12.26646 -12.22614 -11.90825 -11.50975 -11.43174 -10.97185 -10.71330 -10.65275 -10.52310 -10.18797 -9.72650 -9.58641 -9.03510 -8.89771 -8.62844 -7.80083 -6.12764 -4.12298 0.89059 1.24552 1.76916 2.46169 2.66312 2.85236 3.09698 3.15890 3.27014 3.33080 3.34964 3.52400 3.85135 4.36173 4.44299 4.62661 4.76062 4.78937 4.99815 5.10450 5.19610 5.21450 5.42618 5.50092 5.72338 5.76369 5.79501 5.95258 6.06875 6.07411 6.25466 6.42489 6.60989 6.64314 6.88645 6.95478 7.22698 7.55154 7.77834 8.10109 8.41183 8.79627 8.90541 9.46976 11.00296 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.028059 B = 0.002763 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.656757 B =10132.960877 C =10586.736349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 H 0.104 0.896 4 O -0.325 6.325 5 C 0.537 3.463 6 O -0.512 6.512 7 C -0.215 4.215 8 C 0.123 3.877 9 N -0.519 5.519 10 H 0.430 0.570 11 C 0.040 3.960 12 C 0.281 3.719 13 N -0.403 5.403 14 C -0.042 4.042 15 C 0.514 3.486 16 O -0.522 6.522 17 N -0.592 5.592 18 C 0.073 3.927 19 C 0.216 3.784 20 C -0.532 4.532 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.876 3.124 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.265 1.265 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.202 0.798 32 H 0.164 0.836 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 5.120 18.585 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 H 0.122 0.878 4 O -0.241 6.241 5 C 0.382 3.618 6 O -0.402 6.402 7 C -0.223 4.223 8 C -0.020 4.020 9 N -0.114 5.114 10 H 0.269 0.731 11 C -0.070 4.070 12 C -0.035 4.035 13 N -0.080 5.080 14 C -0.070 4.070 15 C 0.298 3.702 16 O -0.397 6.397 17 N -0.325 5.325 18 C -0.071 4.071 19 C 0.096 3.904 20 C -0.570 4.570 21 H 0.094 0.906 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.703 3.297 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.190 1.190 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.219 0.781 32 H 0.182 0.818 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.155 4.904 20.197 21.414 hybrid contribution 0.619 -0.497 -0.942 1.232 sum 5.774 4.407 19.255 20.580 Atomic orbital electron populations 1.22173 0.91873 1.04318 1.03919 1.22603 0.96154 0.97307 0.82272 0.87788 1.86647 1.76916 1.41049 1.19456 1.20110 0.73960 0.84730 0.82989 1.90832 1.49244 1.15775 1.84338 1.18616 1.17018 0.93368 0.93284 1.22905 0.95273 0.98247 0.85571 1.41678 1.49917 1.09307 1.10456 0.73132 1.15089 1.17687 0.86744 0.87508 1.24217 0.93244 0.95161 0.90883 1.81347 1.10066 1.05591 1.11007 1.21060 0.97040 0.99230 0.89640 1.19790 0.79854 0.86716 0.83797 1.90676 1.45266 1.18371 1.85435 1.47741 1.65617 1.12052 1.07126 1.21870 0.99197 0.82093 1.03928 1.19736 0.97270 0.92392 0.81027 1.21314 0.95062 1.31122 1.09515 0.90617 1.24852 0.96561 0.94792 0.96762 1.69889 1.28831 1.33012 1.21667 0.86852 0.84607 0.79399 0.78849 1.19869 1.21057 1.19019 0.90532 0.89450 0.91067 0.78117 0.81850 0.93242 0.89926 0.91815 0.94875 0.94284 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.19 37.16 0.34 -1.90 16 2 C 0.08 1.16 2.14 -27.88 -0.06 1.10 16 3 H 0.10 1.47 6.32 -51.93 -0.33 1.14 16 4 O -0.33 -4.82 9.30 -47.21 -0.44 -5.26 16 5 C 0.54 7.00 7.93 34.38 0.27 7.27 16 6 O -0.51 -7.59 16.18 -19.30 -0.31 -7.90 16 7 C -0.22 -2.07 6.13 -105.02 -0.64 -2.71 16 8 C 0.12 0.80 11.76 -16.45 -0.19 0.61 16 9 N -0.52 -2.45 6.01 -10.29 -0.06 -2.51 16 10 H 0.43 0.65 8.96 -40.82 -0.37 0.28 16 11 C 0.04 0.28 6.90 -83.98 -0.58 -0.30 16 12 C 0.28 2.29 15.88 -22.47 -0.36 1.93 16 13 N -0.40 -4.21 18.54 41.84 0.78 -3.44 16 14 C -0.04 -0.34 10.59 -39.04 -0.41 -0.76 16 15 C 0.51 10.23 6.95 -10.99 -0.08 10.15 16 16 O -0.52 -12.41 16.13 -13.54 -0.22 -12.63 16 17 N -0.59 -11.75 2.86 -182.96 -0.52 -12.27 16 18 C 0.07 1.07 9.79 59.85 0.59 1.65 16 19 C 0.22 5.09 4.25 -5.19 -0.02 5.07 16 20 C -0.53 -14.71 9.94 -34.44 -0.34 -15.05 16 21 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 23 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 24 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.16 6.33 -51.93 -0.33 0.83 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.20 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.22 8.03 -51.93 -0.42 0.81 16 35 H 0.06 0.79 4.92 -51.93 -0.26 0.53 16 36 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 37 H 0.04 0.98 6.78 -51.93 -0.35 0.63 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -36.32 343.49 -5.20 -41.52 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.12 Total: -1.91 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.59 Total: 9.03 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.96 Total: -44.32 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.97 Total: -25.79 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.32 -5.20 -41.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786902821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.131 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds