Wall clock time and date at job start Fri Apr 10 2020 17:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47036 * 179.97438 * 15 13 3 17 17 C 1.34773 * 117.00235 * 179.97438 * 16 15 13 18 18 O 1.21541 * 119.99391 * 359.97438 * 17 16 15 19 19 C 1.47224 * 120.00166 * 180.02562 * 17 16 15 20 20 C 1.38201 * 126.48020 * 0.02576 * 19 17 16 21 21 N 1.34396 * 108.38032 * 179.97438 * 20 19 17 22 22 H 0.96992 * 125.37900 * 179.97438 * 21 20 19 23 23 C 1.37724 * 109.23670 * 359.97438 * 21 20 19 24 24 C 1.43193 * 125.82927 * 180.02562 * 23 21 20 25 25 N 9.59957 * 118.72264 * 243.38201 * 13 1 2 26 26 C 1.36326 * 108.33148 * 359.76473 * 23 21 20 27 27 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 31 31 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 33 33 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 34 34 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 37 37 H 1.08004 * 125.81229 * 0.02562 * 20 19 17 38 38 H 1.08003 * 126.49527 * 180.23382 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3071 2.1954 3.5759 17 6 2.1354 1.7098 4.8214 18 8 1.7329 0.5740 4.9805 19 6 2.4342 2.5554 5.9889 20 6 2.8942 3.8583 5.9636 21 7 3.0428 4.2800 7.2310 22 1 3.3535 5.1592 7.4975 23 6 2.6840 3.2662 8.0915 24 6 2.7066 3.3334 9.5217 25 7 2.7250 3.3866 10.6563 26 6 2.2981 2.1900 7.3490 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 5.7170 2.5725 -4.0840 35 1 0.9443 1.0114 2.5302 36 1 2.6227 0.4186 2.5299 37 1 3.0988 4.4392 5.0763 38 1 1.9561 1.2380 7.7272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786906778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:57 Heat of formation + Delta-G solvation = -34.885319 kcal Electronic energy + Delta-G solvation = -23613.898735 eV Core-core repulsion = 19844.318977 eV Total energy + Delta-G solvation = -3769.579759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.96088 -40.18923 -38.95631 -36.90479 -36.28639 -35.41028 -32.78451 -32.07523 -30.59449 -30.38862 -29.19068 -27.04754 -24.08897 -23.05321 -22.98523 -22.18052 -20.54461 -19.98561 -18.63225 -17.44603 -17.02830 -16.62346 -16.49778 -16.23142 -15.78479 -15.39664 -15.15335 -14.63285 -14.60025 -14.01910 -13.60072 -13.55255 -13.50489 -13.38023 -13.17725 -12.82190 -12.77559 -12.50827 -12.40136 -12.20111 -11.84763 -11.47716 -11.03234 -10.89663 -10.69082 -10.56839 -10.53054 -10.19413 -9.71738 -9.58162 -9.12669 -8.88772 -8.62109 -7.83738 -6.11621 -4.10959 0.90228 1.24884 1.77948 2.44282 2.67506 2.85801 3.09849 3.17180 3.26895 3.32779 3.34527 3.52758 3.83148 4.36535 4.45331 4.64796 4.77144 4.81271 5.03814 5.18495 5.21638 5.26342 5.35547 5.44497 5.49907 5.66271 5.93117 5.95705 6.08399 6.10299 6.34999 6.36845 6.62265 6.64802 6.87785 6.96541 7.23144 7.56231 7.76357 8.10224 8.42182 8.80089 8.92238 9.47945 11.01614 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023020 B = 0.002763 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.029034 B =10133.305267 C =10897.929151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.520 6.520 15 C 0.053 3.947 16 O -0.328 6.328 17 C 0.538 3.462 18 O -0.513 6.513 19 C -0.216 4.216 20 C 0.124 3.876 21 N -0.519 5.519 22 H 0.430 0.570 23 C 0.040 3.960 24 C 0.281 3.719 25 N -0.403 5.403 26 C -0.042 4.042 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.203 0.797 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 0.540 17.038 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.396 6.396 15 C -0.024 4.024 16 O -0.243 6.243 17 C 0.383 3.617 18 O -0.403 6.403 19 C -0.223 4.223 20 C -0.019 4.019 21 N -0.114 5.114 22 H 0.269 0.731 23 C -0.070 4.070 24 C -0.035 4.035 25 N -0.080 5.080 26 C -0.069 4.069 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.219 0.781 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.394 1.081 18.734 20.557 hybrid contribution -0.304 0.671 -1.099 1.322 sum -8.698 1.751 17.636 19.742 Atomic orbital electron populations 1.22247 0.96482 1.01907 1.02321 1.21548 0.93654 0.83539 1.03554 1.47867 1.64181 1.13565 1.06478 1.19697 0.97505 0.93421 0.79578 1.21316 0.95263 1.33086 1.07217 0.90659 1.24854 0.95003 0.95799 0.97341 1.69890 1.15140 1.44884 1.23529 0.86855 0.81448 0.81590 0.79807 1.19890 1.21076 1.19041 1.19732 0.79317 0.87092 0.84327 1.90699 1.44421 1.17645 1.86803 1.22905 1.02878 0.92646 0.83965 1.86577 1.79020 1.44694 1.14051 1.20085 0.74116 0.85036 0.82462 1.90849 1.43456 1.19219 1.86731 1.18592 1.17285 0.95063 0.91387 1.22926 0.96677 0.95209 0.87092 1.41684 1.49988 1.14148 1.05541 0.73119 1.15089 1.17407 0.91583 0.82949 1.24212 0.93604 0.94914 0.90764 1.81345 1.09705 1.05741 1.11229 1.21055 0.97999 0.97734 0.90160 0.91683 0.92949 0.92034 0.89215 0.91260 0.94912 0.94418 0.92521 0.88579 0.88368 0.78056 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.10 1.46 5.93 -4.05 -0.02 1.44 16 3 N -0.59 -11.38 2.46 -175.06 -0.43 -11.81 16 4 C 0.22 5.08 4.23 -5.19 -0.02 5.06 16 5 C -0.53 -14.72 9.94 -34.44 -0.34 -15.06 16 6 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 13 C 0.51 9.90 7.75 -10.98 -0.09 9.82 16 14 O -0.52 -12.21 16.08 -14.11 -0.23 -12.44 16 15 C 0.05 0.79 4.51 36.01 0.16 0.95 16 16 O -0.33 -4.82 9.59 -47.37 -0.45 -5.27 16 17 C 0.54 6.97 7.95 34.38 0.27 7.24 16 18 O -0.51 -7.60 16.71 -19.30 -0.32 -7.92 16 19 C -0.22 -2.08 6.13 -105.02 -0.64 -2.72 16 20 C 0.12 0.83 11.76 -16.44 -0.19 0.63 16 21 N -0.52 -2.52 6.02 -10.28 -0.06 -2.58 16 22 H 0.43 0.72 8.96 -40.82 -0.37 0.35 16 23 C 0.04 0.28 6.90 -83.98 -0.58 -0.30 16 24 C 0.28 2.32 15.88 -22.48 -0.36 1.96 16 25 N -0.40 -4.25 18.54 41.84 0.78 -3.48 16 26 C -0.04 -0.34 10.59 -39.04 -0.41 -0.76 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.58 7.22 -51.93 -0.38 0.21 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.10 1.21 7.18 -51.93 -0.37 0.83 16 36 H 0.10 1.33 7.40 -51.93 -0.38 0.95 16 37 H 0.20 1.05 8.06 -52.48 -0.42 0.62 16 38 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -36.45 346.86 -5.59 -42.03 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.26 Total: -2.35 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -1.94 Total: 8.59 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 1.06 Total: -44.12 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.00 Total: -25.63 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.45 -5.59 -42.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786906778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.149 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds