Wall clock time and date at job start Fri Apr 10 2020 17:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47036 * 179.97438 * 15 13 3 17 17 C 1.34773 * 117.00235 * 179.97438 * 16 15 13 18 18 O 1.21541 * 119.99391 * 359.97438 * 17 16 15 19 19 C 1.47224 * 120.00166 * 180.02562 * 17 16 15 20 20 C 1.38201 * 126.48020 * 0.02576 * 19 17 16 21 21 N 1.34396 * 108.38032 * 179.97438 * 20 19 17 22 22 H 0.96992 * 125.37900 * 179.97438 * 21 20 19 23 23 C 1.37724 * 109.23670 * 359.97438 * 21 20 19 24 24 C 1.43193 * 125.82927 * 180.02562 * 23 21 20 25 25 N 9.59957 * 118.72264 * 243.38201 * 13 1 2 26 26 C 1.36326 * 108.33148 * 359.76473 * 23 21 20 27 27 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 31 31 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 33 33 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 34 34 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 37 37 H 1.08004 * 125.81229 * 0.02562 * 20 19 17 38 38 H 1.08003 * 126.49527 * 180.23382 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3071 2.1954 3.5759 17 6 2.1354 1.7098 4.8214 18 8 1.7329 0.5740 4.9805 19 6 2.4342 2.5554 5.9889 20 6 2.8942 3.8583 5.9636 21 7 3.0428 4.2800 7.2310 22 1 3.3535 5.1592 7.4975 23 6 2.6840 3.2662 8.0915 24 6 2.7066 3.3334 9.5217 25 7 2.7250 3.3866 10.6563 26 6 2.2981 2.1900 7.3490 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 5.7170 2.5725 -4.0840 35 1 0.9443 1.0114 2.5302 36 1 2.6227 0.4186 2.5299 37 1 3.0988 4.4392 5.0763 38 1 1.9561 1.2380 7.7272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786906778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:57 Heat of formation + Delta-G solvation = -59.071534 kcal Electronic energy + Delta-G solvation = -23614.947528 eV Core-core repulsion = 19844.318977 eV Total energy + Delta-G solvation = -3770.628551 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59087 -41.33244 -40.34206 -37.64244 -37.42398 -36.90011 -34.83677 -32.73992 -31.99705 -31.22118 -30.45981 -28.64451 -25.14264 -24.37178 -23.78857 -23.58433 -21.14478 -20.88066 -20.09599 -19.08076 -18.45026 -17.93454 -17.62981 -17.25307 -16.78713 -16.51040 -16.30166 -15.94492 -15.54864 -15.24950 -14.87002 -14.71342 -14.47796 -14.22087 -14.18647 -13.98225 -13.92606 -13.67232 -13.58926 -13.36108 -13.31365 -13.11700 -12.51908 -12.37275 -12.06256 -11.96593 -11.72734 -11.70111 -11.66740 -10.79342 -10.70249 -10.34191 -9.51568 -9.45898 -8.29931 -6.35182 0.31086 0.45455 1.12388 1.35655 1.40546 1.41103 1.49504 1.66620 2.06670 2.09340 2.34757 2.38464 2.43780 3.00299 3.04557 3.48450 3.71081 3.97126 4.07919 4.14518 4.17374 4.22666 4.42646 4.49038 4.64680 4.82398 4.86311 4.92408 5.01731 5.04824 5.28473 5.39230 5.41751 5.47531 5.49387 5.62831 6.18378 6.26083 6.34576 6.59058 6.66845 6.79614 7.21512 7.34668 8.86824 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023020 B = 0.002763 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.029034 B =10133.305267 C =10897.929151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.226 3.774 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.236 1.236 13 C 0.503 3.497 14 O -0.571 6.571 15 C 0.063 3.937 16 O -0.342 6.342 17 C 0.540 3.460 18 O -0.537 6.537 19 C -0.247 4.247 20 C 0.150 3.850 21 N -0.499 5.499 22 H 0.448 0.552 23 C 0.045 3.955 24 C 0.306 3.694 25 N -0.443 5.443 26 C -0.042 4.042 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.268 0.732 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.220 0.780 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.702 0.874 17.494 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.104 3.896 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.159 1.159 13 C 0.291 3.709 14 O -0.450 6.450 15 C -0.013 4.013 16 O -0.257 6.257 17 C 0.387 3.613 18 O -0.429 6.429 19 C -0.255 4.255 20 C 0.004 3.996 21 N -0.094 5.094 22 H 0.290 0.710 23 C -0.066 4.066 24 C -0.009 4.009 25 N -0.120 5.120 26 C -0.070 4.070 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.236 0.764 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.415 1.386 19.237 21.919 hybrid contribution 0.405 0.525 -1.179 1.352 sum -10.011 1.911 18.058 20.735 Atomic orbital electron populations 1.22180 0.93755 1.03836 1.02305 1.21876 0.95831 0.80878 1.04356 1.47954 1.64003 1.15277 1.05365 1.19366 0.94944 0.93256 0.81995 1.21555 0.97039 1.32095 1.06706 0.95168 1.25847 0.96692 0.97241 0.98985 1.70048 1.17479 1.46588 1.24443 0.85726 0.80551 0.79095 0.77650 1.20041 1.20362 1.15912 1.20512 0.77994 0.86689 0.85744 1.90661 1.46677 1.19958 1.87708 1.22771 1.04779 0.91961 0.81836 1.86574 1.79462 1.45036 1.14670 1.20522 0.73338 0.85139 0.82291 1.90827 1.44928 1.20303 1.86796 1.18522 1.20106 0.96234 0.90612 1.23105 0.94351 0.94127 0.87970 1.41649 1.48611 1.14531 1.04599 0.70961 1.14858 1.17545 0.91842 0.82340 1.24180 0.92415 0.93667 0.90670 1.81377 1.11165 1.07102 1.12376 1.21131 0.97779 0.98305 0.89757 0.88744 0.92067 0.92952 0.90221 0.88792 0.92861 0.95862 0.92326 0.85770 0.87071 0.76359 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 71.98 0.74 -2.59 16 2 C 0.09 2.52 5.93 86.38 0.51 3.04 16 3 N -0.59 -22.66 2.46 -826.16 -2.03 -24.69 16 4 C 0.23 10.48 4.23 85.64 0.36 10.85 16 5 C -0.54 -30.49 9.94 25.60 0.25 -30.24 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.59 5.47 84.65 0.46 1.06 16 8 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 9 Si 0.95 42.99 27.47 68.60 1.88 44.87 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 13 C 0.50 19.38 7.75 87.66 0.68 20.06 16 14 O -0.57 -27.21 16.08 15.77 0.25 -26.95 16 15 C 0.06 1.78 4.51 71.24 0.32 2.10 16 16 O -0.34 -9.68 9.59 -50.45 -0.48 -10.17 16 17 C 0.54 13.37 7.95 70.18 0.56 13.93 16 18 O -0.54 -15.31 16.71 19.70 0.33 -14.98 16 19 C -0.25 -4.38 6.13 -20.13 -0.12 -4.50 16 20 C 0.15 1.65 11.76 84.29 0.99 2.64 16 21 N -0.50 -3.50 6.02 -186.44 -1.12 -4.62 16 22 H 0.45 0.12 8.96 -92.71 -0.83 -0.71 16 23 C 0.04 0.53 6.90 39.02 0.27 0.80 16 24 C 0.31 4.60 15.88 88.33 1.40 6.00 16 25 N -0.44 -8.95 18.54 19.00 0.35 -8.60 16 26 C -0.04 -0.63 10.59 22.62 0.24 -0.39 16 27 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 1.16 7.22 -2.39 -0.02 1.14 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 2.33 8.07 -2.38 -0.02 2.31 16 31 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 32 H 0.05 2.25 7.13 -2.39 -0.02 2.24 16 33 H 0.02 1.15 6.85 -2.39 -0.02 1.14 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.12 2.79 7.18 -2.39 -0.02 2.77 16 36 H 0.11 2.84 7.40 -2.39 -0.02 2.83 16 37 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -82.44 346.86 6.38 -76.06 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 0.23 Total: 4.70 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 6.67 Total: 22.75 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -2.50 Total: -96.27 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: 0.10 Total: -52.10 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.87 kcal Total: -82.44 6.38 -76.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786906778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.987 kcal (2) G-P(sol) polarization free energy of solvation -82.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds