Wall clock time and date at job start Fri Apr 10 2020 17:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46502 * 119.99937 * 274.99968 * 3 2 1 5 5 C 1.50701 * 109.46851 * 84.99724 * 4 3 2 6 6 H 1.08004 * 120.00245 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99674 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47331 * 90.00310 * 9 7 5 11 11 H 1.48504 * 109.47112 * 209.99940 * 9 7 5 12 12 H 1.48496 * 109.47321 * 329.99665 * 9 7 5 13 13 S 1.65601 * 120.00130 * 94.99692 * 3 2 1 14 14 O 1.42094 * 106.40298 * 203.54381 * 13 3 2 15 15 O 1.42104 * 106.40216 * 336.46372 * 13 3 2 16 16 N 1.65600 * 107.21792 * 89.99815 * 13 3 2 17 17 C 1.46500 * 119.99278 * 65.00230 * 16 13 3 18 18 C 1.53007 * 109.46714 * 164.99825 * 17 16 13 19 19 H 1.08999 * 110.89291 * 305.69698 * 18 17 16 20 20 C 1.54774 * 111.01015 * 181.80138 * 18 17 16 21 21 C 1.51682 * 102.47824 * 265.87992 * 20 18 17 22 22 C 1.50699 * 125.77027 * 164.69473 * 21 20 18 23 23 N 1.27644 * 108.46336 * 344.72360 * 21 20 18 24 24 O 1.41478 * 113.18177 * 359.67144 * 23 21 20 25 25 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 29 29 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 30 30 H 1.08998 * 109.46723 * 204.99679 * 4 3 2 31 31 H 1.08994 * 109.46700 * 324.99860 * 4 3 2 32 32 H 0.97004 * 120.00074 * 179.97438 * 8 7 5 33 33 H 0.96995 * 120.00443 * 245.00332 * 16 13 3 34 34 H 1.08996 * 109.47376 * 284.99545 * 17 16 13 35 35 H 1.09002 * 109.47358 * 45.00398 * 17 16 13 36 36 H 1.08999 * 110.80509 * 24.12806 * 20 18 17 37 37 H 1.09001 * 110.80500 * 147.43763 * 20 18 17 38 38 H 1.09004 * 109.46749 * 90.00437 * 22 21 20 39 39 H 1.08999 * 109.47313 * 210.00416 * 22 21 20 40 40 H 1.08999 * 109.47459 * 330.01406 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 0.8360 2.7288 -1.6356 6 1 -0.0226 2.5948 -0.9943 7 6 0.7226 3.4681 -2.7939 8 7 1.7683 3.6316 -3.5745 9 14 -0.9161 4.2373 -3.2543 10 1 -1.0048 5.5999 -2.6706 11 1 -1.0242 4.3242 -4.7328 12 1 -2.0222 3.3994 -2.7256 13 16 2.4122 2.1203 1.4287 14 8 2.3056 3.5186 1.1998 15 8 1.6868 1.4416 2.4448 16 7 4.0144 1.8137 1.7138 17 6 5.0350 2.3524 0.8114 18 6 6.4084 2.2550 1.4788 19 1 6.4005 2.7366 2.4566 20 6 7.5096 2.8567 0.5727 21 6 8.0253 1.6385 -0.1694 22 6 8.8771 1.6595 -1.4123 23 7 7.6153 0.5925 0.4365 24 8 6.8369 0.8815 1.5821 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.9080 2.8918 -1.1512 31 1 2.4690 1.4182 -2.0480 32 1 1.6885 4.1514 -4.3897 33 1 4.2771 1.2775 2.4782 34 1 5.0399 1.7789 -0.1154 35 1 4.8112 3.3963 0.5916 36 1 7.0859 3.5824 -0.1215 37 1 8.2984 3.3114 1.1720 38 1 9.9302 1.6694 -1.1309 39 1 8.6692 0.7723 -2.0104 40 1 8.6484 2.5521 -1.9946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867348735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:03 Heat of formation + Delta-G solvation = -61.335168 kcal Electronic energy + Delta-G solvation = -24231.234083 eV Core-core repulsion = 20595.951324 eV Total energy + Delta-G solvation = -3635.282759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40592 -36.63589 -36.04488 -35.28032 -35.12938 -33.78810 -32.59752 -30.87804 -29.79983 -28.60172 -26.75170 -25.93246 -22.79465 -22.04649 -21.83240 -19.89625 -18.89824 -17.30373 -16.96667 -16.84448 -16.39261 -16.09662 -15.32774 -15.28734 -14.72841 -14.26936 -13.98615 -13.68843 -13.38793 -13.18113 -13.04895 -12.97462 -12.82315 -12.53230 -12.24071 -12.06798 -11.86266 -11.65149 -11.45736 -11.41376 -11.25968 -11.20640 -10.99442 -10.96446 -10.74071 -10.46137 -10.39364 -9.90561 -9.62306 -9.57567 -9.28280 -8.44339 -8.08968 -6.07501 -4.09943 1.23077 1.68819 2.97242 3.31861 3.37711 3.41259 3.52938 3.92317 4.12664 4.27428 4.38575 4.43844 4.50011 4.93042 5.06441 5.15561 5.22712 5.26011 5.27796 5.32017 5.44037 5.45863 5.60902 5.75695 5.88067 5.91535 5.93377 6.07907 6.22788 6.43617 6.72503 7.00772 7.11099 7.23829 7.31672 7.40954 7.64305 7.91003 8.20590 8.92149 9.54733 11.01268 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.005066 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.531905 B = 5525.572194 C = 6566.159528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.993 5.993 4 C 0.257 3.743 5 C -0.523 4.523 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.781 3.219 14 O -0.966 6.966 15 O -0.995 6.995 16 N -1.131 6.131 17 C 0.110 3.890 18 C 0.036 3.964 19 H 0.122 0.878 20 C -0.150 4.150 21 C 0.083 3.917 22 C -0.088 4.088 23 N -0.293 5.293 24 O -0.195 6.195 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.412 0.588 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.478 -3.243 5.656 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.835 5.835 4 C 0.135 3.865 5 C -0.562 4.562 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.788 3.212 14 O -0.949 6.949 15 O -0.979 6.979 16 N -0.890 5.890 17 C -0.017 4.017 18 C -0.025 4.025 19 H 0.139 0.861 20 C -0.190 4.190 21 C -0.111 4.111 22 C -0.145 4.145 23 N -0.036 5.036 24 O -0.213 6.213 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.244 0.756 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.823 -3.740 6.082 14.677 hybrid contribution -0.634 1.013 -0.246 1.220 sum 12.189 -2.727 5.835 13.786 Atomic orbital electron populations 1.22256 0.96354 1.00845 1.03624 1.20943 0.94776 0.82131 1.01163 1.57740 1.78422 1.23085 1.24269 1.19051 0.97521 0.90801 0.79085 1.21527 0.96358 1.31628 1.06729 0.91878 1.24920 0.96857 0.96038 0.96217 1.69912 1.29299 1.40754 1.13706 0.86544 0.83930 0.79935 0.77318 1.20493 1.21229 1.19800 1.01996 0.72460 0.73905 0.72800 1.93616 1.85282 1.30545 1.85420 1.93550 1.69955 1.76240 1.58138 1.56146 1.25512 1.68742 1.38564 1.21609 0.86727 1.00552 0.92856 1.23956 0.93330 0.84154 1.01015 0.86063 1.23167 0.98204 0.99029 0.98587 1.26305 0.95503 0.92180 0.97064 1.20439 0.97864 1.04869 0.91343 1.77916 1.05920 1.23244 0.96527 1.91297 1.66002 1.27614 1.36343 0.93078 0.90302 0.92854 0.92104 0.91143 0.94780 0.94814 0.92795 0.75561 0.91117 0.88721 0.87119 0.87584 0.89428 0.89665 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.83 37.16 0.37 -2.76 16 2 C 0.14 2.47 6.09 -4.04 -0.02 2.44 16 3 N -0.99 -20.63 2.86 -115.66 -0.33 -20.96 16 4 C 0.26 6.28 5.12 -5.19 -0.03 6.25 16 5 C -0.52 -14.30 8.41 -34.44 -0.29 -14.59 16 6 H 0.06 1.74 6.89 -52.48 -0.36 1.37 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -25.47 13.29 55.43 0.74 -24.74 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 S 2.78 55.56 6.05 -107.50 -0.65 54.91 16 14 O -0.97 -22.77 16.58 -57.17 -0.95 -23.72 16 15 O -0.99 -21.05 17.11 -57.17 -0.98 -22.03 16 16 N -1.13 -17.50 6.05 -10.61 -0.06 -17.56 16 17 C 0.11 1.56 5.94 -4.04 -0.02 1.54 16 18 C 0.04 0.41 3.88 -25.79 -0.10 0.31 16 19 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 20 C -0.15 -1.32 6.62 -26.46 -0.18 -1.49 16 21 C 0.08 0.84 7.45 -78.58 -0.59 0.26 16 22 C -0.09 -0.58 10.49 36.01 0.38 -0.20 16 23 N -0.29 -3.96 12.45 35.65 0.44 -3.52 16 24 O -0.19 -2.75 12.25 -11.41 -0.14 -2.89 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.59 6.59 -51.93 -0.34 1.25 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.98 7.61 -51.93 -0.40 0.59 16 29 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 30 H 0.03 0.87 7.61 -51.93 -0.40 0.47 16 31 H 0.03 0.84 8.00 -51.93 -0.42 0.43 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.41 5.56 8.65 -34.47 -0.30 5.27 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.37 7.75 -51.93 -0.40 0.96 16 36 H 0.11 0.85 7.91 -51.93 -0.41 0.44 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -34.80 349.26 -8.22 -43.02 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.95 Total: 2.29 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -0.58 Total: -6.64 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: 0.79 Total: -66.78 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -2.07 Total: -48.64 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 55.56 SS G_CDS: -0.65 Total: 54.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.80 -8.22 -43.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867348735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.314 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds