Wall clock time and date at job start Fri Apr 10 2020 17:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99828 * 275.27934 * 3 2 1 5 5 C 1.50709 * 109.46763 * 278.09968 * 4 3 2 6 6 H 1.08000 * 120.00122 * 5.16784 * 5 4 3 7 7 C 1.37874 * 119.99797 * 185.16765 * 5 4 3 8 8 N 1.31517 * 119.99915 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00087 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46992 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47116 * 119.99680 * 9 7 5 12 12 H 1.48497 * 109.47234 * 240.00205 * 9 7 5 13 13 S 1.65598 * 120.00130 * 94.99742 * 3 2 1 14 14 O 1.42109 * 106.40195 * 197.31737 * 13 3 2 15 15 O 1.42101 * 106.40300 * 330.23557 * 13 3 2 16 16 N 1.65600 * 107.21750 * 83.77958 * 13 3 2 17 17 C 1.46498 * 120.00197 * 65.39184 * 16 13 3 18 18 C 1.53000 * 109.47022 * 163.58880 * 17 16 13 19 19 H 1.08998 * 110.88839 * 62.44791 * 18 17 16 20 20 C 1.54766 * 111.01083 * 186.38733 * 18 17 16 21 21 C 1.51682 * 102.48052 * 94.12167 * 20 18 17 22 22 C 1.50700 * 125.77337 * 195.30055 * 21 20 18 23 23 N 1.27654 * 108.45825 * 15.27828 * 21 20 18 24 24 O 1.41378 * 113.17070 * 0.32581 * 23 21 20 25 25 H 1.09002 * 109.47074 * 300.00527 * 1 2 3 26 26 H 1.09004 * 109.46742 * 60.00114 * 1 2 3 27 27 H 1.08997 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47297 * 239.99971 * 2 1 3 29 29 H 1.09004 * 109.47484 * 119.99846 * 2 1 3 30 30 H 1.09002 * 109.47094 * 38.09810 * 4 3 2 31 31 H 1.08998 * 109.47113 * 158.10227 * 4 3 2 32 32 H 0.97005 * 119.99349 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99384 * 245.38978 * 16 13 3 34 34 H 1.08993 * 109.47351 * 283.59301 * 17 16 13 35 35 H 1.09005 * 109.46913 * 43.59504 * 17 16 13 36 36 H 1.09004 * 110.81007 * 212.36978 * 20 18 17 37 37 H 1.09004 * 110.80756 * 335.87081 * 20 18 17 38 38 H 1.08999 * 109.46788 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.46713 * 299.95103 * 22 21 20 40 40 H 1.09002 * 109.46864 * 59.94639 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1525 2.1107 -1.2634 5 6 3.4527 1.7334 -1.9257 6 1 4.0733 0.9609 -1.4961 7 6 3.8498 2.3743 -3.0800 8 7 3.0938 3.3146 -3.6033 9 14 5.4616 1.9072 -3.9005 10 1 6.1203 0.8292 -3.1198 11 1 5.1937 1.4260 -5.2795 12 1 6.3518 3.0945 -3.9546 13 16 2.4122 2.1202 1.4286 14 8 2.4489 3.5155 1.1619 15 8 1.5790 1.5407 2.4232 16 7 3.9632 1.6742 1.7999 17 6 5.0725 2.0974 0.9417 18 6 6.3940 1.9217 1.6925 19 1 6.5665 0.8733 1.9355 20 6 7.5752 2.5058 0.8809 21 6 7.6949 3.9104 1.4408 22 6 8.4592 5.0471 0.8125 23 7 7.0383 3.9670 2.5341 24 8 6.4270 2.7400 2.8799 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.3219 1.8542 -1.9210 31 1 2.1427 3.1827 -1.0668 32 1 3.3734 3.7658 -4.4152 33 1 4.1372 1.1328 2.5858 34 1 5.0847 1.4891 0.0374 35 1 4.9441 3.1459 0.6726 36 1 8.4878 1.9378 1.0618 37 1 7.3388 2.5319 -0.1829 38 1 8.3675 5.9357 1.4371 39 1 9.5104 4.7728 0.7236 40 1 8.0529 5.2548 -0.1774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867348737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:05 Heat of formation + Delta-G solvation = -63.840449 kcal Electronic energy + Delta-G solvation = -24656.731249 eV Core-core repulsion = 21021.339853 eV Total energy + Delta-G solvation = -3635.391396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20634 -36.60730 -36.05425 -35.14721 -35.03759 -33.58932 -32.77686 -30.69928 -29.93873 -28.42961 -26.69406 -25.69119 -23.19247 -21.90891 -21.61351 -19.71242 -18.77919 -17.16993 -17.02478 -16.55540 -16.54080 -15.91683 -15.36136 -15.13878 -14.68562 -14.24941 -13.88110 -13.79355 -13.31040 -13.05819 -12.96604 -12.82375 -12.66312 -12.49881 -12.11137 -12.02897 -11.89535 -11.69105 -11.49005 -11.30400 -11.26969 -11.12968 -11.11677 -11.00389 -10.59293 -10.55569 -10.41001 -10.07889 -9.84417 -9.33807 -9.00088 -8.57835 -8.08151 -6.18497 -4.25574 1.32230 1.88377 3.13013 3.16733 3.21250 3.23574 3.58403 4.10117 4.21162 4.25998 4.49604 4.58905 4.70348 5.09447 5.14728 5.20935 5.30840 5.36068 5.40870 5.43926 5.49855 5.70273 5.75372 5.79876 5.94888 6.01473 6.09445 6.15284 6.28527 6.33592 6.66942 6.70327 7.27479 7.35199 7.42333 7.52244 7.67597 7.79502 8.09530 8.78673 9.39460 10.89433 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.007649 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.413653 B = 3659.661106 C = 5539.832289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.993 5.993 4 C 0.242 3.758 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.281 1.281 13 S 2.787 3.213 14 O -0.977 6.977 15 O -0.999 6.999 16 N -1.124 6.124 17 C 0.109 3.891 18 C 0.035 3.965 19 H 0.118 0.882 20 C -0.150 4.150 21 C 0.081 3.919 22 C -0.088 4.088 23 N -0.293 5.293 24 O -0.194 6.194 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.608 -4.336 5.651 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.835 5.835 4 C 0.120 3.880 5 C -0.580 4.580 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.207 1.207 13 S 2.794 3.206 14 O -0.960 6.960 15 O -0.984 6.984 16 N -0.882 5.882 17 C -0.018 4.018 18 C -0.025 4.025 19 H 0.136 0.864 20 C -0.190 4.190 21 C -0.113 4.113 22 C -0.145 4.145 23 N -0.035 5.035 24 O -0.212 6.212 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.585 -2.959 6.868 10.651 hybrid contribution 1.365 -1.409 -1.317 2.363 sum 8.950 -4.368 5.551 11.401 Atomic orbital electron populations 1.22215 0.96942 1.01332 1.02527 1.20948 0.93706 0.82891 1.01918 1.57763 1.78659 1.22881 1.24154 1.19223 0.97181 0.92626 0.78990 1.21569 1.05958 1.20866 1.09567 0.91822 1.24969 0.97154 0.94786 0.96981 1.69947 1.37414 1.23937 1.20948 0.86616 0.83713 0.78354 0.79792 1.19604 1.20858 1.20742 1.01726 0.72526 0.73715 0.72602 1.93580 1.86427 1.30880 1.85147 1.93547 1.65490 1.79740 1.59574 1.55805 1.24743 1.70022 1.37638 1.21781 0.84351 1.02566 0.93081 1.24003 0.94544 0.97403 0.86579 0.86447 1.23132 0.99421 0.92500 1.03977 1.26260 0.94472 0.96581 0.93968 1.20435 0.98926 0.93868 1.01315 1.77876 1.07086 1.03229 1.15311 1.91261 1.77965 1.22230 1.29728 0.92439 0.92109 0.92442 0.90243 0.92181 0.94738 0.92620 0.92575 0.75955 0.88330 0.89901 0.87844 0.87126 0.90024 0.89491 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.23 37.16 0.38 -2.33 16 2 C 0.13 2.25 6.04 -4.04 -0.02 2.22 16 3 N -0.99 -20.13 2.83 -115.65 -0.33 -20.46 16 4 C 0.24 5.83 5.44 -5.19 -0.03 5.80 16 5 C -0.54 -13.20 8.56 -34.44 -0.29 -13.50 16 6 H 0.06 1.46 6.35 -52.49 -0.33 1.13 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.88 -24.29 13.29 55.43 0.74 -23.55 16 9 Si 0.89 18.98 29.54 -169.99 -5.02 13.96 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 13 S 2.79 56.96 6.07 -107.50 -0.65 56.31 16 14 O -0.98 -23.84 15.99 -57.17 -0.91 -24.75 16 15 O -1.00 -21.10 17.17 -57.17 -0.98 -22.08 16 16 N -1.12 -19.06 5.98 -10.61 -0.06 -19.12 16 17 C 0.11 1.83 5.85 -4.04 -0.02 1.80 16 18 C 0.03 0.48 3.91 -25.80 -0.10 0.38 16 19 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 20 C -0.15 -1.73 6.62 -26.47 -0.18 -1.91 16 21 C 0.08 1.04 7.45 -78.57 -0.59 0.45 16 22 C -0.09 -0.80 10.49 36.01 0.38 -0.42 16 23 N -0.29 -4.75 12.45 35.65 0.44 -4.30 16 24 O -0.19 -3.21 12.17 -11.36 -0.14 -3.35 16 25 H 0.06 0.96 7.97 -51.93 -0.41 0.54 16 26 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 29 H 0.06 0.90 7.78 -51.93 -0.40 0.50 16 30 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.06 1.51 6.80 -51.93 -0.35 1.16 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.41 5.86 8.66 -34.47 -0.30 5.56 16 34 H 0.10 1.66 5.86 -51.93 -0.30 1.36 16 35 H 0.08 1.62 7.71 -51.93 -0.40 1.22 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.24 7.91 -51.93 -0.41 0.83 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -33.10 347.37 -8.11 -41.21 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.85 Total: 6.86 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.57 Total: -5.94 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: 0.79 Total: -67.44 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -2.03 Total: -50.19 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: 56.96 SS G_CDS: -0.65 Total: 56.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.10 -8.11 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867348737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.634 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds