Wall clock time and date at job start Fri Apr 10 2020 17:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99828 * 275.27934 * 3 2 1 5 5 C 1.50709 * 109.46763 * 278.09968 * 4 3 2 6 6 H 1.08000 * 120.00122 * 5.16784 * 5 4 3 7 7 C 1.37874 * 119.99797 * 185.16765 * 5 4 3 8 8 N 1.31517 * 119.99915 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00087 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46992 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47116 * 119.99680 * 9 7 5 12 12 H 1.48497 * 109.47234 * 240.00205 * 9 7 5 13 13 S 1.65598 * 120.00130 * 94.99742 * 3 2 1 14 14 O 1.42109 * 106.40195 * 197.31737 * 13 3 2 15 15 O 1.42101 * 106.40300 * 330.23557 * 13 3 2 16 16 N 1.65600 * 107.21750 * 83.77958 * 13 3 2 17 17 C 1.46498 * 120.00197 * 65.39184 * 16 13 3 18 18 C 1.53000 * 109.47022 * 163.58880 * 17 16 13 19 19 H 1.08998 * 110.88839 * 62.44791 * 18 17 16 20 20 C 1.54766 * 111.01083 * 186.38733 * 18 17 16 21 21 C 1.51682 * 102.48052 * 94.12167 * 20 18 17 22 22 C 1.50700 * 125.77337 * 195.30055 * 21 20 18 23 23 N 1.27654 * 108.45825 * 15.27828 * 21 20 18 24 24 O 1.41378 * 113.17070 * 0.32581 * 23 21 20 25 25 H 1.09002 * 109.47074 * 300.00527 * 1 2 3 26 26 H 1.09004 * 109.46742 * 60.00114 * 1 2 3 27 27 H 1.08997 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47297 * 239.99971 * 2 1 3 29 29 H 1.09004 * 109.47484 * 119.99846 * 2 1 3 30 30 H 1.09002 * 109.47094 * 38.09810 * 4 3 2 31 31 H 1.08998 * 109.47113 * 158.10227 * 4 3 2 32 32 H 0.97005 * 119.99349 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99384 * 245.38978 * 16 13 3 34 34 H 1.08993 * 109.47351 * 283.59301 * 17 16 13 35 35 H 1.09005 * 109.46913 * 43.59504 * 17 16 13 36 36 H 1.09004 * 110.81007 * 212.36978 * 20 18 17 37 37 H 1.09004 * 110.80756 * 335.87081 * 20 18 17 38 38 H 1.08999 * 109.46788 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.46713 * 299.95103 * 22 21 20 40 40 H 1.09002 * 109.46864 * 59.94639 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1525 2.1107 -1.2634 5 6 3.4527 1.7334 -1.9257 6 1 4.0733 0.9609 -1.4961 7 6 3.8498 2.3743 -3.0800 8 7 3.0938 3.3146 -3.6033 9 14 5.4616 1.9072 -3.9005 10 1 6.1203 0.8292 -3.1198 11 1 5.1937 1.4260 -5.2795 12 1 6.3518 3.0945 -3.9546 13 16 2.4122 2.1202 1.4286 14 8 2.4489 3.5155 1.1619 15 8 1.5790 1.5407 2.4232 16 7 3.9632 1.6742 1.7999 17 6 5.0725 2.0974 0.9417 18 6 6.3940 1.9217 1.6925 19 1 6.5665 0.8733 1.9355 20 6 7.5752 2.5058 0.8809 21 6 7.6949 3.9104 1.4408 22 6 8.4592 5.0471 0.8125 23 7 7.0383 3.9670 2.5341 24 8 6.4270 2.7400 2.8799 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.3219 1.8542 -1.9210 31 1 2.1427 3.1827 -1.0668 32 1 3.3734 3.7658 -4.4152 33 1 4.1372 1.1328 2.5858 34 1 5.0847 1.4891 0.0374 35 1 4.9441 3.1459 0.6726 36 1 8.4878 1.9378 1.0618 37 1 7.3388 2.5319 -0.1829 38 1 8.3675 5.9357 1.4371 39 1 9.5104 4.7728 0.7236 40 1 8.0529 5.2548 -0.1774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867348737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:04 Heat of formation + Delta-G solvation = -89.740465 kcal Electronic energy + Delta-G solvation = -24657.854358 eV Core-core repulsion = 21021.339853 eV Total energy + Delta-G solvation = -3636.514505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25548 -38.35281 -37.69392 -36.91821 -36.36891 -34.67222 -34.61492 -31.81069 -31.51159 -29.28012 -28.50478 -26.91250 -24.94372 -23.32864 -22.88955 -20.72219 -20.37465 -18.77779 -18.63769 -18.30248 -17.76411 -17.35212 -16.87121 -16.40359 -16.11937 -15.62311 -15.31024 -14.98114 -14.72939 -14.61639 -14.15592 -13.84925 -13.73959 -13.71791 -13.60499 -13.48651 -13.31744 -13.22062 -13.13740 -13.03372 -12.71695 -12.62771 -12.43179 -12.33354 -12.27775 -12.02771 -11.68803 -11.59021 -11.55026 -10.58811 -10.52251 -10.31425 -9.78814 -8.11799 -6.26789 -0.33056 0.91701 1.46803 1.49858 1.60879 1.95774 2.22861 2.47048 2.59692 3.19699 3.20525 3.37806 3.53466 3.63787 3.69128 3.96914 4.10053 4.34329 4.43210 4.48137 4.60143 4.63625 4.69058 4.72344 4.73270 4.81068 4.86768 4.98993 5.01370 5.15519 5.29316 5.30647 5.42049 5.53193 5.79914 5.90825 6.13952 6.17668 6.51016 6.85176 7.43331 8.97014 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.007649 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.413653 B = 3659.661106 C = 5539.832289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.993 5.993 4 C 0.256 3.744 5 C -0.538 4.538 6 H 0.082 0.918 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.956 3.044 10 H -0.243 1.243 11 H -0.290 1.290 12 H -0.277 1.277 13 S 2.798 3.202 14 O -1.023 7.023 15 O -1.007 7.007 16 N -1.109 6.109 17 C 0.109 3.891 18 C 0.033 3.967 19 H 0.152 0.848 20 C -0.148 4.148 21 C 0.090 3.910 22 C -0.090 4.090 23 N -0.345 5.345 24 O -0.221 6.221 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.264 0.736 33 H 0.423 0.577 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.260 -6.633 5.490 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.835 5.835 4 C 0.133 3.867 5 C -0.577 4.577 6 H 0.100 0.900 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.780 3.220 10 H -0.166 1.166 11 H -0.216 1.216 12 H -0.202 1.202 13 S 2.807 3.193 14 O -1.006 7.006 15 O -0.990 6.990 16 N -0.872 5.872 17 C -0.017 4.017 18 C -0.027 4.027 19 H 0.169 0.831 20 C -0.187 4.187 21 C -0.103 4.103 22 C -0.147 4.147 23 N -0.090 5.090 24 O -0.237 6.237 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.258 0.742 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.160 0.840 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.224 -5.302 6.752 13.351 hybrid contribution 0.501 -0.688 -1.257 1.518 sum 10.725 -5.990 5.495 13.457 Atomic orbital electron populations 1.22211 0.96179 1.03233 1.01249 1.21273 0.94495 0.81068 1.03493 1.57614 1.79273 1.24111 1.22486 1.18795 0.96998 0.90851 0.80099 1.21855 1.05828 1.20761 1.09282 0.89955 1.25916 1.00917 0.94560 0.97773 1.70113 1.39797 1.25604 1.21591 0.85530 0.79270 0.78875 0.78286 1.16566 1.21598 1.20248 1.01138 0.73126 0.72721 0.72352 1.93525 1.87267 1.34066 1.85754 1.93526 1.66355 1.79522 1.59641 1.55413 1.23573 1.69945 1.38255 1.21805 0.85928 1.00264 0.93747 1.24190 0.93318 0.99021 0.86181 0.83052 1.23255 0.99970 0.91805 1.03705 1.27009 0.92418 0.98168 0.92687 1.20655 1.00473 0.92611 1.00999 1.77889 1.09720 1.03534 1.17843 1.91219 1.78539 1.22891 1.31031 0.93645 0.93455 0.88958 0.89551 0.89581 0.96510 0.96636 0.92737 0.74177 0.88129 0.93568 0.84040 0.86482 0.90342 0.85988 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 10.23 71.98 0.74 -4.46 16 2 C 0.12 3.97 6.04 86.38 0.52 4.49 16 3 N -0.99 -40.44 2.83 -519.82 -1.47 -41.92 16 4 C 0.26 12.71 5.44 85.63 0.47 13.18 16 5 C -0.54 -26.16 8.56 25.60 0.22 -25.94 16 6 H 0.08 3.61 6.35 -2.91 -0.02 3.59 16 7 C 0.01 0.38 5.46 84.65 0.46 0.85 16 8 N -0.93 -52.40 13.29 21.45 0.28 -52.11 16 9 Si 0.96 37.76 29.54 68.60 2.03 39.79 16 10 H -0.24 -8.39 7.11 99.48 0.71 -7.69 16 11 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 13 S 2.80 115.78 6.07 -56.49 -0.34 115.44 16 14 O -1.02 -52.21 15.99 -128.00 -2.05 -54.26 16 15 O -1.01 -42.18 17.17 -128.00 -2.20 -44.38 16 16 N -1.11 -36.82 5.98 -187.50 -1.12 -37.94 16 17 C 0.11 3.56 5.85 86.38 0.50 4.07 16 18 C 0.03 0.82 3.91 31.20 0.12 0.95 16 19 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 20 C -0.15 -2.91 6.62 30.76 0.20 -2.71 16 21 C 0.09 2.14 7.45 46.89 0.35 2.49 16 22 C -0.09 -1.42 10.49 71.24 0.75 -0.67 16 23 N -0.34 -11.04 12.45 -40.61 -0.51 -11.55 16 24 O -0.22 -7.14 12.17 -38.29 -0.47 -7.60 16 25 H 0.04 1.48 7.97 -2.39 -0.02 1.47 16 26 H 0.05 1.55 8.09 -2.38 -0.02 1.53 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.09 2.71 8.11 -2.39 -0.02 2.69 16 29 H 0.09 2.37 7.78 -2.39 -0.02 2.35 16 30 H 0.02 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.02 0.90 6.80 -2.39 -0.02 0.88 16 32 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 33 H 0.42 11.49 8.66 -96.75 -0.84 10.65 16 34 H 0.10 3.21 5.86 -2.39 -0.01 3.19 16 35 H 0.05 1.85 7.71 -2.38 -0.02 1.83 16 36 H 0.14 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.12 2.21 7.91 -2.38 -0.02 2.19 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -74.78 347.37 -1.30 -76.07 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.21 Total: 26.22 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 4.33 Total: -7.75 kcal Atomic # 7 Polarization: -140.70 SS G_CDS: -2.81 Total: -143.52 kcal Atomic # 8 Polarization: -101.53 SS G_CDS: -4.71 Total: -106.24 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 16 Polarization: 115.78 SS G_CDS: -0.34 Total: 115.44 kcal Total: -74.78 -1.30 -76.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867348737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.670 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds