Wall clock time and date at job start Fri Apr 10 2020 17:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46087 * 118.73058 * 2 1 4 4 C 1.53019 * 109.92362 * 161.66804 * 3 2 1 5 5 O 1.43256 * 108.65806 * 49.17303 * 4 3 2 6 6 C 1.42958 * 112.98696 * 291.62477 * 5 4 3 7 7 H 1.09001 * 109.36340 * 289.52528 * 6 5 4 8 8 C 1.50702 * 109.41578 * 169.70215 * 6 5 4 9 9 O 1.21278 * 119.99948 * 354.65026 * 8 6 5 10 10 N 1.34777 * 120.00545 * 174.65861 * 8 6 5 11 11 C 1.39464 * 120.00514 * 174.33235 * 10 8 6 12 12 C 1.38596 * 119.58247 * 185.48082 * 11 10 8 13 13 C 1.40807 * 118.79805 * 179.74725 * 12 11 10 14 14 C 1.41535 * 120.99791 * 180.27199 * 13 12 11 15 15 H 1.08000 * 120.00471 * 147.29053 * 14 13 12 16 16 C 1.40036 * 120.00083 * 327.28328 * 14 13 12 17 17 N 1.30740 * 119.99737 * 2.89777 * 16 14 13 18 18 Si 1.86798 * 120.00086 * 182.89178 * 16 14 13 19 19 H 1.48502 * 109.46873 * 60.00615 * 18 16 14 20 20 H 1.48502 * 109.47214 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47533 * 300.00440 * 18 16 14 22 22 C 1.41185 * 118.00430 * 0.24756 * 13 12 11 23 23 C 1.37583 * 119.01792 * 0.02562 * 22 13 12 24 24 N 1.32091 * 121.10877 * 0.02562 * 23 22 13 25 25 C 1.33874 * 118.72552 * 180.02562 * 2 1 3 26 26 O 1.21279 * 118.83806 * 1.85697 * 25 2 1 27 27 H 1.09005 * 109.47421 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47120 * 299.97679 * 1 2 3 29 29 H 1.09003 * 109.47288 * 59.97536 * 1 2 3 30 30 H 1.09003 * 109.39407 * 281.80553 * 3 2 1 31 31 H 1.08999 * 109.39543 * 41.61629 * 3 2 1 32 32 H 1.09000 * 109.60562 * 168.92099 * 4 3 2 33 33 H 1.08999 * 109.60358 * 289.24413 * 4 3 2 34 34 H 0.97003 * 119.99290 * 354.32685 * 10 8 6 35 35 H 1.08000 * 120.60087 * 0.02562 * 12 11 10 36 36 H 0.97005 * 120.00089 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.48580 * 180.02562 * 22 13 12 38 38 H 1.07991 * 119.44777 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1672 1.2810 0.0000 4 6 3.6154 1.0818 0.4525 5 8 4.1830 -0.0026 -0.2918 6 6 3.6083 -1.2688 0.0402 7 1 3.9260 -1.5584 1.0418 8 6 4.0718 -2.3047 -0.9513 9 8 4.7404 -1.9729 -1.9072 10 7 3.7433 -3.6000 -0.7760 11 6 4.0699 -4.5408 -1.7524 12 6 3.6291 -5.8478 -1.6178 13 6 3.9639 -6.7827 -2.6161 14 6 3.5335 -8.1282 -2.5285 15 1 3.3097 -8.6833 -3.4275 16 6 3.3979 -8.7399 -1.2761 17 7 3.6141 -8.0517 -0.1857 18 14 2.9080 -10.5390 -1.1635 19 1 3.9197 -11.3721 -1.8619 20 1 2.8330 -10.9432 0.2635 21 1 1.5815 -10.7318 -1.8024 22 6 4.7414 -6.3376 -3.7073 23 6 5.1377 -5.0208 -3.7513 24 7 4.8032 -4.1751 -2.7933 25 6 2.1084 -1.1740 -0.0005 26 8 1.4584 -2.1973 -0.0354 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5135 0.8902 29 1 -0.3634 0.5142 -0.8898 30 1 2.1568 1.6995 -1.0064 31 1 1.6672 1.9679 0.6828 32 1 4.1855 1.9918 0.2653 33 1 3.6371 0.8492 1.5171 34 1 3.2798 -3.8780 0.0295 35 1 3.0357 -6.1429 -0.7650 36 1 3.5198 -8.4752 0.6819 37 1 5.0208 -7.0207 -4.4958 38 1 5.7329 -4.6730 -4.5825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901095131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:07 Heat of formation + Delta-G solvation = -52.573177 kcal Electronic energy + Delta-G solvation = -24907.805502 eV Core-core repulsion = 21137.458740 eV Total energy + Delta-G solvation = -3770.346762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.14202 -39.26983 -38.01743 -37.56121 -35.54102 -34.24885 -33.64589 -30.81058 -30.44561 -29.61635 -28.23180 -26.10927 -25.89354 -24.06172 -22.05344 -21.74990 -20.00111 -19.37028 -18.17887 -17.67335 -17.41231 -16.93996 -16.03268 -15.83951 -15.35633 -15.19082 -14.81289 -14.44339 -14.13058 -14.09023 -13.84200 -13.64291 -13.35116 -12.98138 -12.77995 -12.53529 -12.43187 -12.36595 -12.12732 -11.60632 -11.36882 -11.15612 -10.91303 -10.85118 -10.26005 -10.12176 -9.70142 -9.58957 -9.41368 -9.33755 -9.04804 -7.86849 -7.72754 -6.98133 -6.63360 -4.58777 2.13566 2.37158 2.65980 2.87328 3.01895 3.06096 3.08847 3.22169 3.43673 3.92567 3.95468 4.03835 4.38559 4.64590 4.72547 4.77044 4.89335 4.93917 5.09008 5.17727 5.20507 5.39405 5.63153 5.68774 5.95157 6.01229 6.46801 6.60434 6.71072 6.82411 6.99335 7.02435 7.20955 7.40525 7.52556 7.76359 7.82762 8.02479 8.24551 8.45597 8.73652 8.82646 8.86085 9.69093 10.20968 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021006 B = 0.003745 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.625668 B = 7475.809486 C = 8272.052013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.608 5.608 3 C 0.079 3.921 4 C 0.040 3.960 5 O -0.337 6.337 6 C 0.058 3.942 7 H 0.118 0.882 8 C 0.517 3.483 9 O -0.454 6.454 10 N -0.637 5.637 11 C 0.335 3.665 12 C -0.225 4.225 13 C 0.140 3.860 14 C -0.459 4.459 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.804 5.804 18 Si 0.919 3.081 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.276 4.276 23 C 0.114 3.886 24 N -0.551 5.551 25 C 0.497 3.503 26 O -0.516 6.516 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.414 0.586 35 H 0.139 0.861 36 H 0.280 0.720 37 H 0.104 0.896 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 15.645 7.089 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.344 5.344 3 C -0.044 4.044 4 C -0.037 4.037 5 O -0.254 6.254 6 C -0.007 4.007 7 H 0.135 0.865 8 C 0.298 3.702 9 O -0.322 6.322 10 N -0.285 5.285 11 C 0.110 3.890 12 C -0.250 4.250 13 C 0.132 3.868 14 C -0.491 4.491 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.431 5.431 18 Si 0.743 3.257 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.299 4.299 23 C -0.041 4.041 24 N -0.270 5.270 25 C 0.283 3.717 26 O -0.392 6.392 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.084 0.916 34 H 0.250 0.750 35 H 0.157 0.843 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.208 16.303 6.443 18.028 hybrid contribution -0.941 -1.616 0.928 2.088 sum -5.149 14.687 7.372 17.221 Atomic orbital electron populations 1.21793 0.78662 1.05033 1.01370 1.47284 1.07688 1.05748 1.73633 1.22205 0.93508 0.85443 1.03294 1.23094 0.92650 0.91857 0.96096 1.88370 1.60407 1.13160 1.63503 1.22283 0.89400 0.87584 1.01399 0.86526 1.19306 0.82001 0.82680 0.86249 1.90820 1.33820 1.79319 1.28231 1.43171 1.57490 1.05718 1.22074 1.18195 0.95261 0.86685 0.88851 1.21838 1.08188 0.89661 1.05334 1.17613 0.87140 0.92728 0.89340 1.19497 1.40246 0.96088 0.93229 0.90179 1.25916 0.92491 1.00718 0.95211 1.69697 1.36790 1.37692 0.98935 0.86198 0.79987 0.81570 0.77914 1.18987 1.20333 1.18929 1.22010 1.07594 0.96847 1.03477 1.21762 0.97240 0.89860 0.95205 1.67186 1.18690 1.37634 1.03467 1.20451 0.90442 0.83928 0.76870 1.90797 1.66645 1.33327 1.48407 0.88776 0.91962 0.91967 0.90338 0.89380 0.86042 0.91613 0.74957 0.84334 0.90888 0.87829 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 10.58 59.85 0.63 1.32 16 2 N -0.61 -6.91 3.23 -182.30 -0.59 -7.50 16 3 C 0.08 0.60 6.69 -4.25 -0.03 0.57 16 4 C 0.04 0.32 6.89 37.17 0.26 0.58 16 5 O -0.34 -4.75 10.03 -55.11 -0.55 -5.30 16 6 C 0.06 0.88 3.31 -29.21 -0.10 0.79 16 7 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 8 C 0.52 10.75 7.02 -10.98 -0.08 10.67 16 9 O -0.45 -11.23 14.77 -14.32 -0.21 -11.44 16 10 N -0.64 -13.84 4.81 -11.49 -0.06 -13.90 16 11 C 0.33 8.61 7.41 -154.70 -1.15 7.46 16 12 C -0.22 -5.99 8.61 -38.48 -0.33 -6.33 16 13 C 0.14 3.81 5.59 -106.55 -0.60 3.21 16 14 C -0.46 -12.13 9.12 -37.65 -0.34 -12.48 16 15 H 0.08 2.02 7.85 -52.49 -0.41 1.60 16 16 C 0.07 1.83 5.43 -17.34 -0.09 1.74 16 17 N -0.80 -20.48 10.60 55.55 0.59 -19.89 16 18 Si 0.92 18.64 29.56 -169.99 -5.02 13.61 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 C -0.28 -6.94 9.90 -38.70 -0.38 -7.32 16 23 C 0.11 2.82 11.15 -17.68 -0.20 2.62 16 24 N -0.55 -14.67 7.86 -12.53 -0.10 -14.77 16 25 C 0.50 7.47 7.13 -11.56 -0.08 7.38 16 26 O -0.52 -9.32 14.51 5.56 0.08 -9.24 16 27 H 0.09 1.08 6.71 -51.93 -0.35 0.73 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.41 7.97 8.02 -40.82 -0.33 7.64 16 35 H 0.14 3.72 6.14 -52.49 -0.32 3.40 16 36 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 37 H 0.10 2.37 8.06 -52.48 -0.42 1.95 16 38 H 0.12 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -35.29 325.57 -7.79 -43.08 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.35 Total: 10.21 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -2.49 Total: 10.21 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.15 Total: -56.05 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.68 Total: -25.98 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.29 -7.79 -43.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901095131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.490 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds