Wall clock time and date at job start Fri Apr 10 2020 17:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46087 * 118.73058 * 2 1 4 4 C 1.53019 * 109.92362 * 161.66804 * 3 2 1 5 5 O 1.43256 * 108.65806 * 49.17303 * 4 3 2 6 6 C 1.42958 * 112.98696 * 291.62477 * 5 4 3 7 7 H 1.09001 * 109.36340 * 289.52528 * 6 5 4 8 8 C 1.50702 * 109.41578 * 169.70215 * 6 5 4 9 9 O 1.21278 * 119.99948 * 354.65026 * 8 6 5 10 10 N 1.34777 * 120.00545 * 174.65861 * 8 6 5 11 11 C 1.39464 * 120.00514 * 174.33235 * 10 8 6 12 12 C 1.38596 * 119.58247 * 185.48082 * 11 10 8 13 13 C 1.40807 * 118.79805 * 179.74725 * 12 11 10 14 14 C 1.41535 * 120.99791 * 180.27199 * 13 12 11 15 15 H 1.08000 * 120.00471 * 147.29053 * 14 13 12 16 16 C 1.40036 * 120.00083 * 327.28328 * 14 13 12 17 17 N 1.30740 * 119.99737 * 2.89777 * 16 14 13 18 18 Si 1.86798 * 120.00086 * 182.89178 * 16 14 13 19 19 H 1.48502 * 109.46873 * 60.00615 * 18 16 14 20 20 H 1.48502 * 109.47214 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47533 * 300.00440 * 18 16 14 22 22 C 1.41185 * 118.00430 * 0.24756 * 13 12 11 23 23 C 1.37583 * 119.01792 * 0.02562 * 22 13 12 24 24 N 1.32091 * 121.10877 * 0.02562 * 23 22 13 25 25 C 1.33874 * 118.72552 * 180.02562 * 2 1 3 26 26 O 1.21279 * 118.83806 * 1.85697 * 25 2 1 27 27 H 1.09005 * 109.47421 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47120 * 299.97679 * 1 2 3 29 29 H 1.09003 * 109.47288 * 59.97536 * 1 2 3 30 30 H 1.09003 * 109.39407 * 281.80553 * 3 2 1 31 31 H 1.08999 * 109.39543 * 41.61629 * 3 2 1 32 32 H 1.09000 * 109.60562 * 168.92099 * 4 3 2 33 33 H 1.08999 * 109.60358 * 289.24413 * 4 3 2 34 34 H 0.97003 * 119.99290 * 354.32685 * 10 8 6 35 35 H 1.08000 * 120.60087 * 0.02562 * 12 11 10 36 36 H 0.97005 * 120.00089 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.48580 * 180.02562 * 22 13 12 38 38 H 1.07991 * 119.44777 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1672 1.2810 0.0000 4 6 3.6154 1.0818 0.4525 5 8 4.1830 -0.0026 -0.2918 6 6 3.6083 -1.2688 0.0402 7 1 3.9260 -1.5584 1.0418 8 6 4.0718 -2.3047 -0.9513 9 8 4.7404 -1.9729 -1.9072 10 7 3.7433 -3.6000 -0.7760 11 6 4.0699 -4.5408 -1.7524 12 6 3.6291 -5.8478 -1.6178 13 6 3.9639 -6.7827 -2.6161 14 6 3.5335 -8.1282 -2.5285 15 1 3.3097 -8.6833 -3.4275 16 6 3.3979 -8.7399 -1.2761 17 7 3.6141 -8.0517 -0.1857 18 14 2.9080 -10.5390 -1.1635 19 1 3.9197 -11.3721 -1.8619 20 1 2.8330 -10.9432 0.2635 21 1 1.5815 -10.7318 -1.8024 22 6 4.7414 -6.3376 -3.7073 23 6 5.1377 -5.0208 -3.7513 24 7 4.8032 -4.1751 -2.7933 25 6 2.1084 -1.1740 -0.0005 26 8 1.4584 -2.1973 -0.0354 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5135 0.8902 29 1 -0.3634 0.5142 -0.8898 30 1 2.1568 1.6995 -1.0064 31 1 1.6672 1.9679 0.6828 32 1 4.1855 1.9918 0.2653 33 1 3.6371 0.8492 1.5171 34 1 3.2798 -3.8780 0.0295 35 1 3.0357 -6.1429 -0.7650 36 1 3.5198 -8.4752 0.6819 37 1 5.0208 -7.0207 -4.4958 38 1 5.7329 -4.6730 -4.5825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901095131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:06 Heat of formation + Delta-G solvation = -77.553870 kcal Electronic energy + Delta-G solvation = -24908.888746 eV Core-core repulsion = 21137.458740 eV Total energy + Delta-G solvation = -3771.430006 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.29485 -40.94180 -39.52823 -38.87654 -36.53600 -36.12455 -35.50330 -32.49515 -31.79309 -30.81075 -29.72132 -27.92065 -27.10098 -24.82065 -23.90151 -23.57360 -21.69583 -20.40165 -19.59445 -19.17517 -18.84684 -17.97842 -17.56273 -17.10388 -16.76938 -16.67231 -16.06619 -16.01460 -15.77189 -15.40527 -15.34415 -15.01680 -14.63245 -14.38358 -14.30771 -14.09643 -13.64809 -13.41669 -13.19588 -13.11368 -12.85768 -12.69240 -12.40112 -12.17426 -11.90444 -11.84239 -11.50212 -11.21214 -11.09669 -10.63643 -9.91755 -9.88215 -9.68975 -8.91021 -8.53402 -6.60727 0.59813 0.99237 1.00779 1.41063 1.41948 1.53037 1.58979 1.76631 1.89866 2.21952 2.76156 2.83733 3.07738 3.32302 3.67296 3.70877 3.81992 4.12680 4.13819 4.29060 4.41200 4.56269 4.67072 4.70423 4.79093 4.80778 4.87885 4.89649 5.06697 5.17503 5.26018 5.44344 5.58062 5.64372 5.92829 6.05597 6.10542 6.39712 6.52475 6.74426 6.77643 6.84581 7.10298 7.74407 8.33760 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021006 B = 0.003745 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.625668 B = 7475.809486 C = 8272.052013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.072 3.928 4 C 0.031 3.969 5 O -0.366 6.366 6 C 0.073 3.927 7 H 0.150 0.850 8 C 0.511 3.489 9 O -0.500 6.500 10 N -0.634 5.634 11 C 0.329 3.671 12 C -0.246 4.246 13 C 0.112 3.888 14 C -0.488 4.488 15 H 0.085 0.915 16 C 0.032 3.968 17 N -0.827 5.827 18 Si 0.995 3.005 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.286 4.286 23 C 0.109 3.891 24 N -0.575 5.575 25 C 0.490 3.510 26 O -0.560 6.560 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.423 0.577 35 H 0.129 0.871 36 H 0.289 0.711 37 H 0.122 0.878 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 16.808 8.377 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C -0.049 4.049 4 C -0.045 4.045 5 O -0.284 6.284 6 C 0.009 3.991 7 H 0.167 0.833 8 C 0.295 3.705 9 O -0.371 6.371 10 N -0.282 5.282 11 C 0.103 3.897 12 C -0.271 4.271 13 C 0.104 3.896 14 C -0.519 4.519 15 H 0.103 0.897 16 C -0.183 4.183 17 N -0.454 5.454 18 Si 0.815 3.185 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.310 4.310 23 C -0.045 4.045 24 N -0.295 5.295 25 C 0.276 3.724 26 O -0.439 6.439 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.151 0.849 32 H 0.170 0.830 33 H 0.107 0.893 34 H 0.261 0.739 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.140 0.860 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.875 17.550 7.759 19.798 hybrid contribution -0.749 -1.814 0.549 2.038 sum -5.624 15.736 8.309 18.662 Atomic orbital electron populations 1.21960 0.77424 1.03988 1.03795 1.47480 1.08692 1.05904 1.71430 1.22543 0.93472 0.84179 1.04718 1.23572 0.93049 0.90939 0.96892 1.88342 1.61201 1.13601 1.65238 1.21986 0.89672 0.86936 1.00533 0.83279 1.20252 0.80663 0.82958 0.86653 1.90775 1.35806 1.80032 1.30503 1.43234 1.57284 1.06071 1.21622 1.18448 0.94581 0.87326 0.89298 1.21793 1.09381 0.90364 1.05570 1.18054 0.87845 0.93511 0.90234 1.19826 1.41423 0.96247 0.94435 0.89667 1.26871 0.91727 1.05427 0.94259 1.69766 1.36214 1.39749 0.99685 0.85053 0.79684 0.75311 0.78433 1.18410 1.19136 1.18333 1.22211 1.07638 0.97477 1.03648 1.22279 0.96898 0.89736 0.95563 1.67325 1.19599 1.38323 1.04232 1.20447 0.90231 0.84641 0.77131 1.90781 1.67267 1.35020 1.50872 0.91582 0.88402 0.90550 0.90249 0.84874 0.83017 0.89278 0.73939 0.85290 0.89988 0.85992 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.58 127.77 1.35 2.50 16 2 N -0.60 -12.37 3.23 -849.57 -2.75 -15.12 16 3 C 0.07 0.84 6.69 86.46 0.58 1.42 16 4 C 0.03 0.39 6.89 71.99 0.50 0.89 16 5 O -0.37 -9.75 10.03 -129.97 -1.30 -11.05 16 6 C 0.07 2.18 3.31 28.99 0.10 2.27 16 7 H 0.15 3.33 8.14 -2.39 -0.02 3.31 16 8 C 0.51 21.77 7.02 87.66 0.61 22.39 16 9 O -0.50 -25.47 14.77 15.98 0.24 -25.24 16 10 N -0.63 -28.64 4.81 -308.66 -1.49 -30.12 16 11 C 0.33 17.61 7.41 132.75 0.98 18.60 16 12 C -0.25 -13.66 8.61 22.98 0.20 -13.46 16 13 C 0.11 6.27 5.59 -21.11 -0.12 6.15 16 14 C -0.49 -26.31 9.12 23.52 0.21 -26.09 16 15 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16 16 C 0.03 1.59 5.43 85.29 0.46 2.06 16 17 N -0.83 -42.71 10.60 21.84 0.23 -42.48 16 18 Si 1.00 37.74 29.56 68.60 2.03 39.77 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 22 C -0.29 -14.72 9.90 22.84 0.23 -14.50 16 23 C 0.11 5.50 11.15 84.50 0.94 6.44 16 24 N -0.57 -31.55 7.86 -193.54 -1.52 -33.07 16 25 C 0.49 14.43 7.13 87.69 0.62 15.06 16 26 O -0.56 -20.70 14.51 -3.03 -0.04 -20.75 16 27 H 0.07 1.51 6.71 -2.38 -0.02 1.49 16 28 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.13 0.42 8.13 -2.39 -0.02 0.40 16 32 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 34 H 0.42 17.03 8.02 -92.71 -0.74 16.29 16 35 H 0.13 7.28 6.14 -2.91 -0.02 7.26 16 36 H 0.29 13.46 8.29 -92.70 -0.77 12.70 16 37 H 0.12 5.63 8.06 -2.91 -0.02 5.61 16 38 H 0.15 6.61 8.06 -2.92 -0.02 6.59 16 Total: -1.00 -80.77 325.57 2.44 -78.33 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.37 Total: 35.99 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.67 Total: 23.73 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.52 Total: -120.78 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -1.11 Total: -57.04 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -80.77 2.44 -78.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901095131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.779 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds