Wall clock time and date at job start Fri Apr 10 2020 17:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00281 * 2 1 4 4 S 1.65607 * 120.00012 * 180.02562 * 2 1 3 5 5 O 1.42099 * 106.40077 * 330.38135 * 4 2 1 6 6 O 1.42099 * 106.40308 * 197.46103 * 4 2 1 7 7 N 1.65599 * 107.22127 * 83.92142 * 4 2 1 8 8 C 1.36934 * 120.00169 * 83.64949 * 7 4 2 9 9 H 1.08003 * 119.99476 * 33.20154 * 8 7 4 10 10 C 1.38809 * 120.00462 * 212.91951 * 8 7 4 11 11 N 1.31618 * 119.99850 * 207.58120 * 10 8 7 12 12 Si 1.86804 * 119.99789 * 27.57890 * 10 8 7 13 13 H 1.48497 * 109.46812 * 359.06076 * 12 10 8 14 14 H 1.48500 * 109.46750 * 119.06357 * 12 10 8 15 15 H 1.48504 * 109.46851 * 239.06432 * 12 10 8 16 16 C 1.46500 * 119.99861 * 263.66073 * 7 4 2 17 17 C 1.52999 * 109.46983 * 264.99685 * 16 7 4 18 18 C 1.53001 * 109.47310 * 180.02562 * 17 16 7 19 19 H 1.09000 * 110.43172 * 305.69775 * 18 17 16 20 20 C 1.54630 * 110.48585 * 183.16066 * 18 17 16 21 21 C 1.54483 * 101.76285 * 216.52521 * 20 18 17 22 22 N 1.46767 * 105.47476 * 25.41070 * 21 20 18 23 23 C 1.34647 * 111.33640 * 342.87784 * 22 21 20 24 24 O 1.21278 * 125.07512 * 180.50600 * 23 22 21 25 25 H 1.09004 * 109.46810 * 239.99706 * 1 2 3 26 26 H 1.08996 * 109.47226 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47381 * 120.00058 * 1 2 3 28 28 H 1.08990 * 109.47061 * 269.94831 * 3 2 1 29 29 H 1.09006 * 109.46569 * 29.94858 * 3 2 1 30 30 H 1.09003 * 109.47399 * 149.94167 * 3 2 1 31 31 H 0.97006 * 119.99880 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.47529 * 24.99551 * 16 7 4 33 33 H 1.09003 * 109.47232 * 145.00078 * 16 7 4 34 34 H 1.09000 * 109.46879 * 300.00264 * 17 16 7 35 35 H 1.09003 * 109.46950 * 59.99599 * 17 16 7 36 36 H 1.09002 * 110.96960 * 334.63626 * 20 18 17 37 37 H 1.08994 * 110.97148 * 98.40603 * 20 18 17 38 38 H 1.08997 * 110.24677 * 144.41476 * 21 20 18 39 39 H 1.09004 * 110.24274 * 266.41607 * 21 20 18 40 40 H 0.96999 * 124.34584 * 162.97927 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.4673 -2.3745 0.6727 6 8 3.6198 -1.1317 0.4085 7 7 2.3931 -1.9418 -1.5737 8 6 3.3832 -1.4592 -2.3873 9 1 4.3515 -1.2176 -1.9743 10 6 3.1443 -1.2860 -3.7436 11 7 4.1398 -1.3585 -4.6016 12 14 1.4100 -0.9503 -4.3511 13 1 0.4748 -0.9403 -3.1977 14 1 1.3708 0.3689 -5.0318 15 1 1.0060 -2.0127 -5.3068 16 6 1.4222 -2.9071 -2.0951 17 6 1.9986 -4.3201 -1.9855 18 6 0.9849 -5.3282 -2.5306 19 1 0.0240 -5.2102 -2.0297 20 6 1.5113 -6.7719 -2.3585 21 6 0.9944 -7.4511 -3.6461 22 7 0.8429 -6.3690 -4.6260 23 6 0.8263 -5.1637 -4.0261 24 8 0.7038 -4.1018 -4.5989 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 2.3800 1.5829 -1.0276 29 1 1.6080 2.0286 0.5131 30 1 3.1495 1.1386 0.5147 31 1 3.9728 -1.2378 -5.5496 32 1 0.5008 -2.8447 -1.5160 33 1 1.2104 -2.6811 -3.1402 34 1 2.9199 -4.3825 -2.5646 35 1 2.2104 -4.5460 -0.9404 36 1 2.6005 -6.7879 -2.3194 37 1 1.0836 -7.2399 -1.4719 38 1 1.7181 -8.1842 -4.0025 39 1 0.0325 -7.9291 -3.4603 40 1 0.7634 -6.5046 -5.5831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902380569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:14 Heat of formation + Delta-G solvation = -88.727807 kcal Electronic energy + Delta-G solvation = -25197.036517 eV Core-core repulsion = 21560.565925 eV Total energy + Delta-G solvation = -3636.470593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.18187 -36.30423 -36.12029 -35.97692 -35.19923 -34.58473 -32.93620 -31.63931 -28.99189 -27.44292 -26.46531 -24.18957 -23.71743 -22.28866 -21.77467 -19.55440 -18.25835 -17.30594 -17.23557 -16.67194 -16.39693 -16.27801 -15.37896 -14.89055 -14.63339 -13.94758 -13.90447 -13.61362 -13.49139 -13.21358 -12.90145 -12.62211 -12.37838 -12.34435 -12.24472 -12.09823 -11.90875 -11.53478 -11.45007 -11.23401 -10.95915 -10.71403 -10.68183 -10.64139 -10.54316 -10.30217 -10.07953 -9.70870 -9.29890 -8.96816 -8.82637 -8.22966 -7.99885 -6.47140 -3.90796 1.79477 2.89316 3.33788 3.43672 3.51257 3.57456 3.96894 4.33040 4.46839 4.56564 4.63414 4.85991 4.91898 5.14760 5.39461 5.40775 5.48509 5.52616 5.68130 5.80345 5.87339 5.92003 5.96068 6.01437 6.14589 6.16531 6.20368 6.33800 6.40386 6.63188 6.69535 6.83330 6.96994 7.12056 7.19202 7.39378 7.66112 8.38440 8.52953 9.11271 9.13099 10.59581 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.006841 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.658611 B = 4092.276260 C = 4868.537941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.025 6.025 3 C 0.095 3.905 4 S 2.677 3.323 5 O -1.020 7.020 6 O -0.991 6.991 7 N -0.841 5.841 8 C -0.286 4.286 9 H 0.116 0.884 10 C 0.077 3.923 11 N -0.835 5.835 12 Si 0.865 3.135 13 H -0.265 1.265 14 H -0.298 1.298 15 H -0.238 1.238 16 C 0.119 3.881 17 C -0.112 4.112 18 C -0.123 4.123 19 H 0.107 0.893 20 C -0.130 4.130 21 C 0.104 3.896 22 N -0.741 5.741 23 C 0.515 3.485 24 O -0.507 6.507 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.276 0.724 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -8.185 1.703 11.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.860 5.860 3 C -0.052 4.052 4 S 2.701 3.299 5 O -1.004 7.004 6 O -0.976 6.976 7 N -0.671 5.671 8 C -0.429 4.429 9 H 0.133 0.867 10 C -0.137 4.137 11 N -0.471 5.471 12 Si 0.692 3.308 13 H -0.190 1.190 14 H -0.226 1.226 15 H -0.163 1.163 16 C -0.007 4.007 17 C -0.152 4.152 18 C -0.146 4.146 19 H 0.125 0.875 20 C -0.168 4.168 21 C -0.021 4.021 22 N -0.399 5.399 23 C 0.301 3.699 24 O -0.381 6.381 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.986 -7.975 2.384 11.535 hybrid contribution -1.090 0.423 -1.172 1.656 sum -9.076 -7.552 1.212 11.869 Atomic orbital electron populations 1.21281 0.80966 1.01861 1.00681 1.58768 1.13797 1.22997 1.90393 1.21395 0.96642 0.85674 1.01458 1.07970 0.73108 0.72516 0.76265 1.93378 1.69628 1.62241 1.75198 1.93422 1.37138 1.84474 1.82558 1.53946 1.35917 1.45700 1.31515 1.19035 0.91043 1.43177 0.89608 0.86694 1.25551 0.98147 0.93925 0.96071 1.69921 1.32829 1.41262 1.03092 0.87072 0.85145 0.78084 0.80500 1.18984 1.22638 1.16276 1.21500 0.90536 0.87646 1.01057 1.21809 0.98190 0.93585 1.01613 1.21998 1.02263 0.96492 0.93799 0.87478 1.22702 1.02511 0.94217 0.97350 1.22009 1.00867 0.89962 0.89254 1.46283 1.76360 1.07460 1.09749 1.21157 0.74816 0.83461 0.90418 1.90886 1.48376 1.27730 1.71122 0.92840 0.91812 0.93354 0.93170 0.92901 0.90806 0.91420 0.92081 0.89750 0.90033 0.90790 0.89522 0.89198 0.90620 0.91478 0.75630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.38 59.84 0.62 2.32 16 2 N -1.02 -20.97 3.64 -129.21 -0.47 -21.44 16 3 C 0.09 1.71 10.59 59.85 0.63 2.35 16 4 S 2.68 63.47 6.02 -107.50 -0.65 62.83 16 5 O -1.02 -24.47 16.15 -57.17 -0.92 -25.40 16 6 O -0.99 -26.01 15.67 -57.17 -0.90 -26.91 16 7 N -0.84 -20.54 2.60 -59.91 -0.16 -20.70 16 8 C -0.29 -7.71 9.61 -15.06 -0.14 -7.86 16 9 H 0.12 3.36 7.58 -52.48 -0.40 2.96 16 10 C 0.08 2.09 5.26 -17.43 -0.09 2.00 16 11 N -0.83 -23.43 13.97 55.49 0.78 -22.66 16 12 Si 0.87 21.35 24.52 -169.99 -4.17 17.18 16 13 H -0.27 -6.30 6.31 56.52 0.36 -5.95 16 14 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.24 -5.99 5.51 56.52 0.31 -5.68 16 16 C 0.12 2.64 3.74 -4.04 -0.02 2.63 16 17 C -0.11 -2.13 4.91 -26.73 -0.13 -2.26 16 18 C -0.12 -1.83 2.95 -90.63 -0.27 -2.10 16 19 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 20 C -0.13 -1.36 6.70 -25.10 -0.17 -1.53 16 21 C 0.10 0.92 7.78 -3.12 -0.02 0.90 16 22 N -0.74 -9.11 6.25 -59.14 -0.37 -9.48 16 23 C 0.52 8.66 7.85 -10.76 -0.08 8.57 16 24 O -0.51 -10.87 13.20 5.56 0.07 -10.79 16 25 H 0.05 0.87 7.99 -51.93 -0.41 0.46 16 26 H 0.06 0.90 7.79 -51.93 -0.40 0.50 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.77 7.92 -51.93 -0.41 0.35 16 30 H 0.07 1.38 7.00 -51.93 -0.36 1.02 16 31 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 1.26 7.43 -51.93 -0.39 0.88 16 33 H 0.08 1.98 1.23 -51.93 -0.06 1.92 16 34 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 0.93 7.91 -51.93 -0.41 0.52 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.41 4.35 8.96 -40.82 -0.37 3.98 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -34.52 327.98 -7.38 -41.90 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.87 Total: 5.51 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 0.33 Total: 5.02 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -0.22 Total: -74.28 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -1.75 Total: -63.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.17 Total: 17.18 kcal Atomic # 16 Polarization: 63.47 SS G_CDS: -0.65 Total: 62.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.52 -7.38 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902380569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.827 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds