Wall clock time and date at job start Fri Apr 10 2020 17:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00281 * 2 1 4 4 S 1.65607 * 120.00012 * 180.02562 * 2 1 3 5 5 O 1.42099 * 106.40077 * 330.38135 * 4 2 1 6 6 O 1.42099 * 106.40308 * 197.46103 * 4 2 1 7 7 N 1.65599 * 107.22127 * 83.92142 * 4 2 1 8 8 C 1.36934 * 120.00169 * 83.64949 * 7 4 2 9 9 H 1.08003 * 119.99476 * 33.20154 * 8 7 4 10 10 C 1.38809 * 120.00462 * 212.91951 * 8 7 4 11 11 N 1.31618 * 119.99850 * 207.58120 * 10 8 7 12 12 Si 1.86804 * 119.99789 * 27.57890 * 10 8 7 13 13 H 1.48497 * 109.46812 * 359.06076 * 12 10 8 14 14 H 1.48500 * 109.46750 * 119.06357 * 12 10 8 15 15 H 1.48504 * 109.46851 * 239.06432 * 12 10 8 16 16 C 1.46500 * 119.99861 * 263.66073 * 7 4 2 17 17 C 1.52999 * 109.46983 * 264.99685 * 16 7 4 18 18 C 1.53001 * 109.47310 * 180.02562 * 17 16 7 19 19 H 1.09000 * 110.43172 * 305.69775 * 18 17 16 20 20 C 1.54630 * 110.48585 * 183.16066 * 18 17 16 21 21 C 1.54483 * 101.76285 * 216.52521 * 20 18 17 22 22 N 1.46767 * 105.47476 * 25.41070 * 21 20 18 23 23 C 1.34647 * 111.33640 * 342.87784 * 22 21 20 24 24 O 1.21278 * 125.07512 * 180.50600 * 23 22 21 25 25 H 1.09004 * 109.46810 * 239.99706 * 1 2 3 26 26 H 1.08996 * 109.47226 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47381 * 120.00058 * 1 2 3 28 28 H 1.08990 * 109.47061 * 269.94831 * 3 2 1 29 29 H 1.09006 * 109.46569 * 29.94858 * 3 2 1 30 30 H 1.09003 * 109.47399 * 149.94167 * 3 2 1 31 31 H 0.97006 * 119.99880 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.47529 * 24.99551 * 16 7 4 33 33 H 1.09003 * 109.47232 * 145.00078 * 16 7 4 34 34 H 1.09000 * 109.46879 * 300.00264 * 17 16 7 35 35 H 1.09003 * 109.46950 * 59.99599 * 17 16 7 36 36 H 1.09002 * 110.96960 * 334.63626 * 20 18 17 37 37 H 1.08994 * 110.97148 * 98.40603 * 20 18 17 38 38 H 1.08997 * 110.24677 * 144.41476 * 21 20 18 39 39 H 1.09004 * 110.24274 * 266.41607 * 21 20 18 40 40 H 0.96999 * 124.34584 * 162.97927 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.4673 -2.3745 0.6727 6 8 3.6198 -1.1317 0.4085 7 7 2.3931 -1.9418 -1.5737 8 6 3.3832 -1.4592 -2.3873 9 1 4.3515 -1.2176 -1.9743 10 6 3.1443 -1.2860 -3.7436 11 7 4.1398 -1.3585 -4.6016 12 14 1.4100 -0.9503 -4.3511 13 1 0.4748 -0.9403 -3.1977 14 1 1.3708 0.3689 -5.0318 15 1 1.0060 -2.0127 -5.3068 16 6 1.4222 -2.9071 -2.0951 17 6 1.9986 -4.3201 -1.9855 18 6 0.9849 -5.3282 -2.5306 19 1 0.0240 -5.2102 -2.0297 20 6 1.5113 -6.7719 -2.3585 21 6 0.9944 -7.4511 -3.6461 22 7 0.8429 -6.3690 -4.6260 23 6 0.8263 -5.1637 -4.0261 24 8 0.7038 -4.1018 -4.5989 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 2.3800 1.5829 -1.0276 29 1 1.6080 2.0286 0.5131 30 1 3.1495 1.1386 0.5147 31 1 3.9728 -1.2378 -5.5496 32 1 0.5008 -2.8447 -1.5160 33 1 1.2104 -2.6811 -3.1402 34 1 2.9199 -4.3825 -2.5646 35 1 2.2104 -4.5460 -0.9404 36 1 2.6005 -6.7879 -2.3194 37 1 1.0836 -7.2399 -1.4719 38 1 1.7181 -8.1842 -4.0025 39 1 0.0325 -7.9291 -3.4603 40 1 0.7634 -6.5046 -5.5831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902380569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:13 Heat of formation + Delta-G solvation = -118.138952 kcal Electronic energy + Delta-G solvation = -25198.311880 eV Core-core repulsion = 21560.565925 eV Total energy + Delta-G solvation = -3637.745956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34496 -38.18293 -37.94130 -37.32808 -36.84307 -36.63783 -34.51838 -33.37863 -30.18759 -28.88427 -27.80313 -26.09084 -25.32985 -23.89187 -22.69095 -20.78582 -20.18517 -19.16879 -18.61687 -18.29048 -18.12043 -17.69851 -17.13422 -16.64637 -15.81679 -15.48252 -15.37421 -15.18688 -14.82347 -14.69570 -14.56878 -14.42110 -13.99894 -13.75695 -13.57197 -13.45183 -13.35503 -13.13259 -13.06974 -12.96194 -12.66044 -12.50646 -12.46512 -12.36194 -12.00511 -11.87980 -11.82245 -11.51025 -10.96162 -10.51621 -9.99280 -9.96485 -9.83552 -8.50795 -6.01668 -0.10180 1.35434 1.43241 1.58187 1.66159 2.17210 2.34200 2.53648 2.71129 2.87781 3.44328 3.59452 3.63983 3.88525 4.01894 4.08502 4.21092 4.44981 4.48949 4.52665 4.55401 4.63527 4.73407 4.76880 4.83691 4.88407 4.95831 4.97942 5.07823 5.13432 5.23507 5.27952 5.42804 5.64028 5.82149 5.97926 6.10858 6.26217 7.07716 7.12289 7.36666 8.61220 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.006841 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.658611 B = 4092.276260 C = 4868.537941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.028 6.028 3 C 0.087 3.913 4 S 2.733 3.267 5 O -1.014 7.014 6 O -1.018 7.018 7 N -0.862 5.862 8 C -0.308 4.308 9 H 0.076 0.924 10 C 0.046 3.954 11 N -0.886 5.886 12 Si 0.915 3.085 13 H -0.251 1.251 14 H -0.303 1.303 15 H -0.250 1.250 16 C 0.105 3.895 17 C -0.108 4.108 18 C -0.123 4.123 19 H 0.126 0.874 20 C -0.124 4.124 21 C 0.103 3.897 22 N -0.730 5.730 23 C 0.500 3.500 24 O -0.565 6.565 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.275 0.725 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.015 -9.275 3.718 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.867 5.867 3 C -0.058 4.058 4 S 2.751 3.249 5 O -0.999 6.999 6 O -1.002 7.002 7 N -0.693 5.693 8 C -0.445 4.445 9 H 0.094 0.906 10 C -0.162 4.162 11 N -0.524 5.524 12 Si 0.742 3.258 13 H -0.175 1.175 14 H -0.232 1.232 15 H -0.175 1.175 16 C -0.021 4.021 17 C -0.149 4.149 18 C -0.146 4.146 19 H 0.143 0.857 20 C -0.161 4.161 21 C -0.020 4.020 22 N -0.385 5.385 23 C 0.287 3.713 24 O -0.444 6.444 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.714 -9.135 4.304 14.723 hybrid contribution -0.336 0.736 -1.472 1.679 sum -11.051 -8.399 2.833 14.167 Atomic orbital electron populations 1.21623 0.78155 1.04856 1.01191 1.58180 1.15764 1.22628 1.90091 1.21606 0.96913 0.85378 1.01895 1.04633 0.72516 0.73009 0.74751 1.93411 1.69576 1.62424 1.74452 1.93421 1.38931 1.85180 1.82714 1.53620 1.36980 1.48215 1.30519 1.18477 0.91059 1.44670 0.90248 0.90648 1.25859 1.00358 0.94054 0.95962 1.69999 1.34417 1.44757 1.03227 0.86308 0.82508 0.76931 0.80099 1.17485 1.23171 1.17477 1.21778 0.90842 0.88845 1.00653 1.21714 0.98177 0.93417 1.01547 1.22030 1.02039 0.97958 0.92535 0.85653 1.22784 1.02319 0.91320 0.99724 1.22329 1.03259 0.89008 0.87383 1.46335 1.74230 1.07140 1.10829 1.21573 0.74463 0.83798 0.91458 1.90837 1.51290 1.30005 1.72255 0.91460 0.87796 0.93746 0.93596 0.88047 0.91895 0.91505 0.90537 0.90776 0.92992 0.90364 0.90238 0.85949 0.88058 0.88348 0.74819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.62 10.38 127.77 1.33 3.95 16 2 N -1.03 -39.10 3.64 -562.69 -2.05 -41.15 16 3 C 0.09 2.93 10.59 127.77 1.35 4.28 16 4 S 2.73 126.13 6.02 -56.49 -0.34 125.79 16 5 O -1.01 -45.98 16.15 -128.00 -2.07 -48.04 16 6 O -1.02 -53.27 15.67 -128.00 -2.01 -55.28 16 7 N -0.86 -42.55 2.60 -343.45 -0.89 -43.44 16 8 C -0.31 -17.43 9.61 84.03 0.81 -16.63 16 9 H 0.08 4.74 7.58 -2.91 -0.02 4.72 16 10 C 0.05 2.64 5.26 84.86 0.45 3.09 16 11 N -0.89 -53.01 13.97 21.65 0.30 -52.71 16 12 Si 0.92 45.90 24.52 68.60 1.68 47.58 16 13 H -0.25 -11.70 6.31 99.48 0.63 -11.08 16 14 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 15 H -0.25 -12.95 5.51 99.48 0.55 -12.41 16 16 C 0.10 4.64 3.74 86.38 0.32 4.97 16 17 C -0.11 -4.15 4.91 30.59 0.15 -4.00 16 18 C -0.12 -3.49 2.95 -10.80 -0.03 -3.52 16 19 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 20 C -0.12 -2.22 6.70 31.65 0.21 -2.01 16 21 C 0.10 1.44 7.78 86.83 0.68 2.12 16 22 N -0.73 -16.68 6.25 -459.48 -2.87 -19.55 16 23 C 0.50 16.62 7.85 87.86 0.69 17.31 16 24 O -0.56 -24.83 13.20 -3.02 -0.04 -24.87 16 25 H 0.07 1.88 7.99 -2.39 -0.02 1.86 16 26 H 0.10 2.36 7.79 -2.39 -0.02 2.34 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.10 2.46 7.92 -2.38 -0.02 2.44 16 30 H 0.06 2.25 7.00 -2.39 -0.02 2.24 16 31 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 32 H 0.08 3.06 7.43 -2.39 -0.02 3.04 16 33 H 0.07 3.54 1.23 -2.39 0.00 3.53 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.08 1.56 7.91 -2.39 -0.02 1.54 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.41 8.29 8.96 -92.71 -0.83 7.46 16 Total: -1.00 -79.47 327.98 -2.34 -81.81 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.01 Total: 20.32 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.95 Total: 9.55 kcal Atomic # 7 Polarization: -151.35 SS G_CDS: -5.51 Total: -156.86 kcal Atomic # 8 Polarization: -124.07 SS G_CDS: -4.11 Total: -128.19 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.68 Total: 47.58 kcal Atomic # 16 Polarization: 126.13 SS G_CDS: -0.34 Total: 125.79 kcal Total: -79.47 -2.34 -81.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902380569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.334 kcal (2) G-P(sol) polarization free energy of solvation -79.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds