Wall clock time and date at job start Fri Apr 10 2020 17:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00218 * 2 1 4 4 H 1.48501 * 109.47415 * 239.99581 * 3 2 1 5 5 H 1.48503 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47047 * 119.99972 * 3 2 1 7 7 C 1.37882 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00097 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.87254 * 62.39202 * 9 7 2 11 11 C 1.55141 * 110.99081 * 298.54995 * 9 7 2 12 12 C 1.54315 * 103.01924 * 206.25695 * 11 9 7 13 13 N 1.47441 * 107.23551 * 22.27739 * 12 11 9 14 14 C 1.46896 * 111.00166 * 123.25858 * 13 12 11 15 15 C 1.50699 * 109.46766 * 69.87771 * 14 13 12 16 16 C 1.38235 * 120.41314 * 95.02567 * 15 14 13 17 17 C 1.39374 * 118.34857 * 179.97438 * 16 15 14 18 18 O 1.35523 * 120.50928 * 180.27074 * 17 16 15 19 19 N 1.32824 * 118.98069 * 0.02562 * 17 16 15 20 20 C 1.31762 * 120.71917 * 359.97438 * 19 17 16 21 21 C 1.50698 * 119.09456 * 179.97438 * 20 19 17 22 22 C 1.52997 * 117.49801 * 8.74166 * 21 20 19 23 23 C 1.53005 * 117.49528 * 300.08454 * 21 20 19 24 24 N 1.31791 * 121.80940 * 359.97438 * 20 19 17 25 25 C 1.47848 * 108.56359 * 0.99368 * 13 12 11 26 26 H 0.97005 * 119.99555 * 0.02562 * 1 2 3 27 27 H 0.96704 * 114.00110 * 297.60527 * 10 9 7 28 28 H 1.08996 * 110.70711 * 87.87179 * 11 9 7 29 29 H 1.09005 * 110.85428 * 324.70306 * 11 9 7 30 30 H 1.09010 * 109.88732 * 262.87594 * 12 11 9 31 31 H 1.08990 * 109.89381 * 141.68848 * 12 11 9 32 32 H 1.08997 * 109.47290 * 309.87967 * 14 13 12 33 33 H 1.08993 * 109.47364 * 189.87886 * 14 13 12 34 34 H 1.08000 * 120.82226 * 0.02562 * 16 15 14 35 35 H 0.96694 * 114.00346 * 269.72767 * 18 17 16 36 36 H 1.09002 * 115.54991 * 154.41784 * 21 20 19 37 37 H 1.09003 * 117.49832 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.49615 * 145.02107 * 22 21 20 39 39 H 1.09001 * 117.49335 * 214.97920 * 23 21 20 40 40 H 1.08998 * 117.49843 * 359.97438 * 23 21 20 41 41 H 1.09005 * 110.37067 * 94.73371 * 25 13 12 42 42 H 1.09003 * 110.37440 * 217.07197 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 8 0.4610 -2.6300 -1.1853 11 6 0.3731 -2.6352 1.2702 12 6 0.2528 -4.1634 1.4478 13 7 1.3914 -4.7765 0.7396 14 6 2.1850 -5.6164 1.6466 15 6 1.3940 -6.8453 2.0140 16 6 1.5645 -8.0234 1.3111 17 6 0.8112 -9.1338 1.6879 18 8 0.9474 -10.3122 1.0325 19 7 -0.0387 -9.0207 2.7024 20 6 -0.1705 -7.8785 3.3459 21 6 -1.1461 -7.7911 4.4912 22 6 -1.7842 -9.0941 4.9767 23 6 -2.6179 -8.0804 4.1891 24 7 0.5273 -6.8105 3.0155 25 6 2.2183 -3.6987 0.1561 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2246 -1.9542 -1.2772 28 1 -0.6078 -2.1873 1.1112 29 1 0.8659 -2.1847 2.1318 30 1 -0.6847 -4.5142 1.0162 31 1 0.2942 -4.4181 2.5068 32 1 2.4218 -5.0533 2.5493 33 1 3.1091 -5.9138 1.1510 34 1 2.2647 -8.0820 0.4909 35 1 0.3480 -10.4158 0.2809 36 1 -0.9261 -7.0292 5.2390 37 1 -1.4980 -10.0147 4.4680 38 1 -1.9843 -9.1894 6.0439 39 1 -3.3661 -7.5090 4.7386 40 1 -2.8805 -8.3335 3.1620 41 1 3.0358 -3.4409 0.8294 42 1 2.6074 -4.0027 -0.8157 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:37 Heat of formation + Delta-G solvation = -3.978102 kcal Electronic energy + Delta-G solvation = -25050.970753 eV Core-core repulsion = 21418.564327 eV Total energy + Delta-G solvation = -3632.406426 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33286 -38.49891 -38.02243 -36.94055 -34.96176 -33.17023 -32.14071 -31.66665 -29.65767 -28.12408 -26.39660 -25.27505 -24.26940 -22.85419 -22.47320 -21.08124 -19.85663 -19.57554 -18.85070 -17.76409 -16.99829 -16.49137 -15.59078 -15.49555 -15.19074 -14.89791 -14.80246 -14.72595 -14.12911 -13.78884 -13.74217 -12.73824 -12.57380 -12.39757 -12.30710 -12.03041 -11.67935 -11.57965 -11.26079 -11.23237 -11.07408 -10.90826 -10.79403 -10.72996 -10.55234 -10.46394 -10.42721 -10.26509 -9.84541 -9.32536 -9.28331 -9.12943 -8.60305 -8.08847 -7.72056 -6.21658 -4.30228 0.78104 0.93359 3.08146 3.22929 3.28113 3.30699 3.44574 3.67320 3.90985 4.25085 4.29818 4.68575 4.72590 4.82290 4.84782 4.94843 5.05629 5.07643 5.17089 5.45900 5.50164 5.65197 5.70153 5.73322 5.78114 5.93694 5.95637 6.05158 6.13155 6.17365 6.21819 6.51253 6.64871 6.85552 6.94850 7.07668 7.19578 7.40271 7.48600 7.57336 7.64264 7.81198 8.07476 8.14596 8.71643 9.38245 9.50255 10.85206 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.003357 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.950422 B = 8338.250659 C = 9035.795345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.252 3.748 10 O -0.579 6.579 11 C -0.143 4.143 12 C 0.041 3.959 13 N -0.521 5.521 14 C 0.092 3.908 15 C 0.216 3.784 16 C -0.230 4.230 17 C 0.358 3.642 18 O -0.478 6.478 19 N -0.545 5.545 20 C 0.373 3.627 21 C -0.101 4.101 22 C -0.155 4.155 23 C -0.153 4.153 24 N -0.511 5.511 25 C 0.060 3.940 26 H 0.267 0.733 27 H 0.377 0.623 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.407 0.593 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 -15.820 6.280 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.212 3.788 10 O -0.387 6.387 11 C -0.182 4.182 12 C -0.086 4.086 13 N -0.246 5.246 14 C -0.037 4.037 15 C 0.070 3.930 16 C -0.254 4.254 17 C 0.171 3.829 18 O -0.285 6.285 19 N -0.270 5.270 20 C 0.106 3.894 21 C -0.121 4.121 22 C -0.193 4.193 23 C -0.191 4.191 24 N -0.227 5.227 25 C -0.067 4.067 26 H 0.077 0.923 27 H 0.226 0.774 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.170 0.830 35 H 0.266 0.734 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.068 0.932 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.773 -16.639 6.867 18.087 hybrid contribution 0.671 1.840 -0.351 1.989 sum -1.103 -14.799 6.516 16.208 Atomic orbital electron populations 1.69734 1.05941 1.27502 1.50113 1.24994 0.94976 0.99396 0.93655 0.86536 0.79587 0.82416 0.78749 1.20055 1.21154 1.20177 1.21495 0.93483 0.90683 1.51967 0.92142 1.19517 0.86851 0.90431 0.82005 1.86133 1.51408 1.56726 1.44459 1.23246 1.02597 0.91913 1.00414 1.22902 0.93371 0.95889 0.96428 1.63659 1.08860 1.21871 1.30239 1.21219 0.94685 0.90793 0.96989 1.21597 0.89788 0.94404 0.87184 1.22754 1.05352 0.93046 1.04207 1.19334 0.89695 0.84769 0.89071 1.84699 1.62342 1.34018 1.47490 1.67541 1.21487 1.28229 1.09748 1.21835 0.92033 0.82698 0.92864 1.20641 0.92337 1.02348 0.96736 1.23031 1.02171 0.93713 1.00357 1.22985 0.91546 1.02580 1.02037 1.68004 1.07447 1.30706 1.16503 1.23025 0.95217 0.90145 0.98322 0.92318 0.77388 0.90523 0.92582 0.92343 0.92641 0.92249 0.89081 0.82954 0.73433 0.85110 0.87325 0.88225 0.87807 0.88593 0.93170 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 10.75 55.43 0.60 -23.12 16 2 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 3 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.22 8.27 -34.44 -0.28 -14.50 16 8 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 9 C 0.25 6.19 0.87 -89.64 -0.08 6.11 16 10 O -0.58 -15.06 13.16 -35.23 -0.46 -15.53 16 11 C -0.14 -3.30 5.37 -24.91 -0.13 -3.43 16 12 C 0.04 0.84 6.32 -2.84 -0.02 0.82 16 13 N -0.52 -9.95 5.15 -232.70 -1.20 -11.15 16 14 C 0.09 1.44 4.91 -4.98 -0.02 1.41 16 15 C 0.22 3.28 5.96 -82.31 -0.49 2.79 16 16 C -0.23 -3.06 9.79 -39.16 -0.38 -3.44 16 17 C 0.36 4.71 7.83 -16.70 -0.13 4.58 16 18 O -0.48 -5.03 13.58 -18.26 -0.25 -5.28 16 19 N -0.54 -7.68 9.37 -10.78 -0.10 -7.79 16 20 C 0.37 5.39 7.31 -157.23 -1.15 4.24 16 21 C -0.10 -1.17 6.23 -91.77 -0.57 -1.74 16 22 C -0.16 -1.46 10.01 -26.70 -0.27 -1.72 16 23 C -0.15 -1.50 10.24 -26.69 -0.27 -1.78 16 24 N -0.51 -8.07 9.14 -7.05 -0.06 -8.14 16 25 C 0.06 1.25 5.86 -2.30 -0.01 1.24 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.38 9.89 7.56 45.56 0.34 10.24 16 28 H 0.08 1.90 7.54 -51.93 -0.39 1.50 16 29 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 30 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.06 1.07 6.49 -51.93 -0.34 0.74 16 32 H 0.06 0.95 7.96 -51.93 -0.41 0.53 16 33 H 0.09 1.21 7.99 -51.93 -0.42 0.79 16 34 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.41 2.26 9.06 45.56 0.41 2.68 16 36 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.11 1.13 7.54 -51.93 -0.39 0.74 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -30.10 349.13 -9.66 -39.77 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -4.51 Total: 14.16 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -3.91 Total: -3.61 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.77 Total: -50.20 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.71 Total: -20.80 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.10 -9.66 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.787 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds