Wall clock time and date at job start Fri Apr 10 2020 17:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00327 * 2 1 4 4 H 1.48504 * 109.47192 * 266.07325 * 3 2 1 5 5 H 1.48509 * 109.47040 * 26.06538 * 3 2 1 6 6 H 1.48497 * 109.47391 * 146.06732 * 3 2 1 7 7 C 1.37879 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00352 * 353.93159 * 7 2 1 9 9 C 1.50703 * 119.99781 * 173.92831 * 7 2 1 10 10 O 1.42899 * 110.63832 * 325.50800 * 9 7 2 11 11 C 1.55148 * 110.72369 * 88.65561 * 9 7 2 12 12 C 1.54905 * 101.62154 * 154.02385 * 11 9 7 13 13 N 1.47473 * 104.80804 * 323.04397 * 12 11 9 14 14 C 1.34779 * 125.62738 * 204.05420 * 13 12 11 15 15 O 1.21566 * 119.99972 * 180.02562 * 14 13 12 16 16 C 1.47707 * 119.99948 * 0.02562 * 14 13 12 17 17 N 1.32205 * 126.68072 * 359.69685 * 16 14 13 18 18 N 1.28842 * 110.15127 * 179.80404 * 17 16 14 19 19 H 0.97007 * 124.97809 * 180.15651 * 18 17 16 20 20 C 1.34317 * 110.04404 * 0.39968 * 18 17 16 21 21 C 1.35587 * 107.21178 * 359.82628 * 20 18 17 22 22 C 1.50375 * 124.61661 * 179.78342 * 21 20 18 23 23 C 1.53468 * 108.29116 * 343.78050 * 22 21 20 24 24 C 1.53107 * 109.51740 * 49.46360 * 23 22 21 25 25 C 1.50709 * 128.90416 * 179.87851 * 20 18 17 26 26 C 1.47017 * 108.72507 * 24.06438 * 13 12 11 27 27 H 0.97000 * 119.99602 * 359.97438 * 1 2 3 28 28 H 0.96703 * 114.00401 * 297.51365 * 10 9 7 29 29 H 1.09008 * 111.00280 * 272.11625 * 11 9 7 30 30 H 1.09005 * 111.00737 * 35.92522 * 11 9 7 31 31 H 1.09000 * 110.36746 * 81.84091 * 12 11 9 32 32 H 1.08999 * 110.37060 * 204.17451 * 12 11 9 33 33 H 1.09004 * 109.69782 * 103.45858 * 22 21 20 34 34 H 1.08999 * 109.70345 * 224.06068 * 22 21 20 35 35 H 1.09002 * 109.45378 * 289.45496 * 23 22 21 36 36 H 1.08998 * 109.46787 * 169.48617 * 23 22 21 37 37 H 1.09006 * 109.44047 * 169.90327 * 24 23 22 38 38 H 1.09003 * 109.41370 * 49.99720 * 24 23 22 39 39 H 1.08996 * 109.68966 * 283.00903 * 25 20 18 40 40 H 1.08990 * 109.69287 * 43.59325 * 25 20 18 41 41 H 1.08992 * 109.89001 * 239.56259 * 26 13 12 42 42 H 1.09006 * 110.01020 * 118.46293 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5798 1.9984 -1.3968 5 1 1.4075 2.6753 0.6152 6 1 3.5027 1.4655 0.7815 7 6 2.0045 -1.1941 0.0005 8 1 1.4691 -2.1267 0.0998 9 6 3.5052 -1.1978 -0.1375 10 8 3.9347 -0.1388 -0.9955 11 6 4.1847 -1.0878 1.2529 12 6 5.5506 -1.7685 0.9874 13 7 5.2462 -2.8768 0.0634 14 6 5.9835 -3.9942 -0.0922 15 8 5.6361 -4.8458 -0.8872 16 6 7.2135 -4.1842 0.7032 17 7 7.7142 -3.3469 1.5954 18 7 8.7948 -3.8322 2.1021 19 1 9.3361 -3.3965 2.7790 20 6 9.0650 -5.0273 1.5518 21 6 8.0823 -5.2872 0.6545 22 6 8.0041 -6.5282 -0.1912 23 6 9.3778 -7.2121 -0.1710 24 6 9.8624 -7.3438 1.2753 25 6 10.2178 -5.9579 1.8285 26 6 4.0059 -2.5610 -0.6600 27 1 -0.4849 0.8401 0.0004 28 1 3.6068 -0.2098 -1.9024 29 1 4.3174 -0.0450 1.5415 30 1 3.6178 -1.6311 2.0090 31 1 6.2407 -1.0652 0.5213 32 1 5.9699 -2.1531 1.9171 33 1 7.2517 -7.2035 0.2161 34 1 7.7421 -6.2595 -1.2146 35 1 10.0897 -6.6137 -0.7396 36 1 9.2970 -8.2027 -0.6187 37 1 10.7445 -7.9836 1.3056 38 1 9.0729 -7.7856 1.8832 39 1 11.1165 -5.5855 1.3369 40 1 10.3868 -6.0237 2.9032 41 1 3.2577 -3.3296 -0.4664 42 1 4.2039 -2.4977 -1.7300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:48 Heat of formation + Delta-G solvation = -12.304410 kcal Electronic energy + Delta-G solvation = -25532.150609 eV Core-core repulsion = 21899.383127 eV Total energy + Delta-G solvation = -3632.767482 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.88411 -39.37946 -37.46962 -37.09046 -34.68509 -32.71635 -32.33460 -30.44331 -30.08858 -29.50903 -28.23261 -25.67337 -23.98162 -23.50238 -22.32177 -21.96655 -19.72796 -19.20140 -18.84872 -17.80734 -17.54428 -16.57806 -16.07048 -15.36067 -15.04702 -14.85347 -14.64263 -14.55233 -14.05866 -13.92103 -13.48454 -13.29085 -13.21872 -13.04959 -12.65462 -12.29436 -12.26820 -12.05029 -11.66146 -11.45006 -11.16253 -11.07279 -10.98607 -10.84816 -10.61197 -10.43838 -10.27934 -10.05618 -9.63173 -9.33069 -9.17932 -8.70880 -8.61674 -8.49414 -8.05617 -6.17060 -4.28648 1.65153 2.05163 2.72614 3.43877 3.47532 3.53048 3.67575 3.69739 4.29234 4.41832 4.50523 4.58562 4.62298 4.95938 5.04506 5.08283 5.15188 5.21258 5.27269 5.33650 5.38076 5.50386 5.63495 5.73112 5.82640 5.87715 5.91455 5.95967 6.10991 6.14643 6.18078 6.21563 6.45612 6.56544 6.66840 6.79048 6.84171 6.95179 7.15471 7.48272 7.79837 8.01330 8.15397 8.56047 8.67214 8.85083 9.44180 10.92045 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.033916 B = 0.003490 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.359041 B = 8020.667383 C = 8488.766922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.945 3.055 4 H -0.291 1.291 5 H -0.325 1.325 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.218 3.782 10 O -0.563 6.563 11 C -0.124 4.124 12 C 0.103 3.897 13 N -0.596 5.596 14 C 0.606 3.394 15 O -0.542 6.542 16 C 0.007 3.993 17 N -0.256 5.256 18 N -0.379 5.379 19 H 0.443 0.557 20 C 0.004 3.996 21 C -0.144 4.144 22 C -0.042 4.042 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.046 4.046 26 C 0.094 3.906 27 H 0.267 0.733 28 H 0.372 0.628 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.147 -10.583 4.530 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.780 3.220 4 H -0.218 1.218 5 H -0.256 1.256 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.099 0.901 9 C 0.178 3.822 10 O -0.371 6.371 11 C -0.162 4.162 12 C -0.020 4.020 13 N -0.328 5.328 14 C 0.393 3.607 15 O -0.419 6.419 16 C -0.153 4.153 17 N -0.092 5.092 18 N -0.091 5.091 19 H 0.286 0.714 20 C -0.123 4.123 21 C -0.154 4.154 22 C -0.081 4.081 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.084 4.084 26 C -0.028 4.028 27 H 0.076 0.924 28 H 0.220 0.780 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.880 -9.797 5.095 24.509 hybrid contribution 0.470 0.357 -0.369 0.696 sum 22.351 -9.440 4.726 24.719 Atomic orbital electron populations 1.69969 1.06824 1.27766 1.47790 1.25106 0.94866 1.00414 0.92632 0.85796 0.77959 0.80112 0.78160 1.21801 1.25602 1.19277 1.21199 0.88416 0.95447 1.53864 0.90124 1.20119 0.93947 0.81340 0.86794 1.86131 1.76655 1.49822 1.24522 1.23156 0.93500 1.01094 0.98472 1.22551 0.98339 0.87987 0.93139 1.48414 1.25266 1.18205 1.40906 1.16514 0.81140 0.81147 0.81924 1.90750 1.70784 1.42880 1.37436 1.21657 0.98913 0.94284 1.00423 1.74043 0.98976 1.24130 1.12072 1.43071 1.19231 1.14641 1.32181 0.71354 1.21131 1.01040 0.90206 0.99903 1.19867 0.95336 0.98504 1.01727 1.19975 0.96667 0.91961 0.99452 1.21669 0.97071 1.00889 0.96203 1.21563 1.01580 0.95102 0.97007 1.20203 0.93565 0.93141 1.01533 1.22897 0.84243 1.00027 0.95639 0.92412 0.77971 0.89936 0.89835 0.91888 0.90027 0.90614 0.89738 0.91780 0.91203 0.91008 0.91275 0.90048 0.90422 0.90600 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 2 C 0.07 2.08 5.46 -17.82 -0.10 1.99 16 3 Si 0.94 23.21 24.83 -169.99 -4.22 18.99 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.32 -8.19 7.11 56.52 0.40 -7.79 16 6 H -0.27 -6.37 5.19 56.52 0.29 -6.08 16 7 C -0.55 -14.82 8.81 -34.44 -0.30 -15.12 16 8 H 0.08 2.37 7.81 -52.49 -0.41 1.96 16 9 C 0.22 4.94 0.68 -89.94 -0.06 4.88 16 10 O -0.56 -12.36 8.75 -35.23 -0.31 -12.66 16 11 C -0.12 -2.57 5.87 -24.59 -0.14 -2.71 16 12 C 0.10 1.89 6.15 -2.50 -0.02 1.87 16 13 N -0.60 -11.86 3.33 -171.65 -0.57 -12.43 16 14 C 0.61 11.93 7.85 -12.39 -0.10 11.83 16 15 O -0.54 -11.68 16.13 5.31 0.09 -11.60 16 16 C 0.01 0.12 6.95 -82.99 -0.58 -0.46 16 17 N -0.26 -3.73 9.40 33.28 0.31 -3.42 16 18 N -0.38 -3.97 6.82 33.42 0.23 -3.74 16 19 H 0.44 2.82 8.96 -190.21 -1.71 1.12 16 20 C 0.00 0.04 7.12 -82.45 -0.59 -0.54 16 21 C -0.14 -1.98 5.99 -104.88 -0.63 -2.61 16 22 C -0.04 -0.51 5.54 -27.80 -0.15 -0.67 16 23 C -0.12 -1.00 5.91 -26.43 -0.16 -1.16 16 24 C -0.11 -0.76 5.89 -26.47 -0.16 -0.92 16 25 C -0.05 -0.30 6.31 -27.67 -0.17 -0.47 16 26 C 0.09 2.00 6.22 -3.06 -0.02 1.98 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.37 7.26 8.98 45.56 0.41 7.67 16 29 H 0.08 1.72 6.23 -51.92 -0.32 1.40 16 30 H 0.08 1.73 8.04 -51.93 -0.42 1.31 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.39 6.21 -51.93 -0.32 1.06 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.16 7.67 -51.93 -0.40 0.76 16 35 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 1.71 7.65 -51.93 -0.40 1.31 16 42 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -33.71 330.38 -8.50 -42.21 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.61 Total: 5.47 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -3.17 Total: -2.11 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.74 Total: -45.29 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.22 Total: -24.26 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.22 Total: 18.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.71 -8.50 -42.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.906 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds