Wall clock time and date at job start Fri Apr 10 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00300 * 2 1 4 4 C 1.53003 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.87457 * 54.56170 * 4 3 2 6 6 C 1.54317 * 109.88333 * 175.74173 * 4 3 2 7 7 C 1.55152 * 102.94561 * 141.60663 * 6 4 3 8 8 H 1.09000 * 111.03849 * 82.58549 * 7 6 4 9 9 O 1.42902 * 111.00526 * 206.42172 * 7 6 4 10 10 C 1.54908 * 101.58083 * 324.49466 * 7 6 4 11 11 N 1.47029 * 109.87854 * 293.54773 * 4 3 2 12 12 C 1.34770 * 125.65016 * 61.60301 * 11 4 3 13 13 O 1.21544 * 120.00033 * 356.18464 * 12 11 4 14 14 C 1.47883 * 119.99800 * 176.17557 * 12 11 4 15 15 C 1.39914 * 120.03007 * 20.50783 * 14 12 11 16 16 C 1.38326 * 120.36441 * 180.02562 * 15 14 12 17 17 C 1.37754 * 120.41129 * 359.97438 * 16 15 14 18 18 C 1.40751 * 120.03720 * 359.97438 * 17 16 15 19 19 C 1.41441 * 120.17412 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00074 * 24.69198 * 19 18 17 21 21 C 1.39936 * 119.99502 * 204.69298 * 19 18 17 22 22 N 1.30823 * 120.00330 * 17.11946 * 21 19 18 23 23 Si 1.86800 * 119.99740 * 197.11457 * 21 19 18 24 24 H 1.48500 * 109.46881 * 90.00459 * 23 21 19 25 25 H 1.48500 * 109.47146 * 209.99895 * 23 21 19 26 26 H 1.48501 * 109.47479 * 330.00490 * 23 21 19 27 27 C 1.38998 * 120.02514 * 200.23541 * 14 12 11 28 28 H 1.08993 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47099 * 59.99285 * 1 2 3 30 30 H 1.09001 * 109.46863 * 299.99839 * 1 2 3 31 31 H 1.09000 * 109.47166 * 300.00609 * 3 2 1 32 32 H 1.08999 * 109.46688 * 59.99924 * 3 2 1 33 33 H 1.09004 * 110.71979 * 259.97057 * 6 4 3 34 34 H 1.09000 * 110.72387 * 23.23897 * 6 4 3 35 35 H 0.96703 * 113.99704 * 173.64810 * 9 7 6 36 36 H 1.08997 * 110.36995 * 278.17188 * 10 7 6 37 37 H 1.09002 * 110.36737 * 155.84300 * 10 7 6 38 38 H 1.08007 * 119.81698 * 0.02562 * 15 14 12 39 39 H 1.08000 * 119.79937 * 179.97438 * 16 15 14 40 40 H 1.08001 * 119.98338 * 179.97438 * 17 16 15 41 41 H 0.97002 * 120.00170 * 180.02562 * 22 21 19 42 42 H 1.08008 * 120.20150 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8576 0.5630 -0.8360 6 6 4.1730 2.5858 -0.1084 7 6 5.4017 2.4820 0.8332 8 1 6.2455 2.0147 0.3255 9 8 5.7635 3.7656 1.3467 10 6 4.8551 1.5680 1.9581 11 7 3.9908 0.5942 1.2666 12 6 3.6703 -0.6334 1.7212 13 8 2.8905 -1.3275 1.0987 14 6 4.2677 -1.1360 2.9771 15 6 4.8037 -0.2376 3.9062 16 6 5.3647 -0.7001 5.0829 17 6 5.4017 -2.0502 5.3543 18 6 4.8664 -2.9691 4.4322 19 6 4.9024 -4.3558 4.7081 20 1 4.9547 -4.7020 5.7297 21 6 4.8703 -5.2793 3.6572 22 7 5.1422 -4.8920 2.4375 23 14 4.4393 -7.0650 3.9959 24 1 2.9710 -7.2513 3.8748 25 1 5.1314 -7.9364 3.0127 26 1 4.8725 -7.4270 5.3694 27 6 4.2920 -2.5010 3.2383 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 4.4877 2.7886 -1.1321 34 1 3.4818 3.3520 0.2426 35 1 6.4629 3.7394 2.0139 36 1 4.2738 2.1513 2.6721 37 1 5.6746 1.0563 2.4629 38 1 4.7794 0.8230 3.7033 39 1 5.7762 0.0015 5.7935 40 1 5.8417 -2.4038 6.2750 41 1 5.1196 -5.5321 1.7090 42 1 3.8751 -3.1979 2.5262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593816946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:05 Heat of formation + Delta-G solvation = -85.189939 kcal Electronic energy + Delta-G solvation = -25679.286475 eV Core-core repulsion = 22011.065688 eV Total energy + Delta-G solvation = -3668.220787 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.11868 -37.91763 -37.33751 -36.69472 -35.32140 -33.75811 -31.69014 -29.69520 -29.51323 -29.35787 -26.63225 -25.38222 -24.86001 -23.26288 -21.68611 -20.89003 -20.47181 -18.84843 -17.56334 -17.54048 -16.46991 -16.07957 -15.73709 -15.49916 -15.10349 -14.84444 -14.62228 -14.10007 -13.93820 -13.81400 -13.16174 -13.03133 -12.80721 -12.62891 -12.52551 -12.32167 -12.12662 -11.64435 -11.53206 -11.37760 -11.14580 -11.06348 -10.94433 -10.91376 -10.50394 -10.47913 -10.09507 -9.92933 -9.53895 -9.33268 -9.18812 -8.77811 -8.18632 -7.57919 -7.47405 -6.78168 -4.39626 2.31971 2.83514 3.08826 3.11869 3.17467 3.30904 3.80949 3.92197 3.94099 4.30948 4.44648 4.56673 4.69931 4.92776 5.13164 5.24034 5.37694 5.43103 5.47357 5.53153 5.60058 5.62102 5.67711 5.70061 5.85353 5.91257 5.93290 6.11186 6.15170 6.32858 6.63673 6.81570 7.01403 7.08235 7.24153 7.41696 7.44685 7.50058 7.71537 7.83280 7.95315 8.12477 8.21283 8.53478 8.82991 8.86416 9.08890 10.16774 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.004636 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.904255 B = 6037.893393 C = 7263.733811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.343 6.343 3 C 0.050 3.950 4 C 0.142 3.858 5 H 0.083 0.917 6 C -0.116 4.116 7 C 0.086 3.914 8 H 0.077 0.923 9 O -0.559 6.559 10 C 0.065 3.935 11 N -0.615 5.615 12 C 0.573 3.427 13 O -0.500 6.500 14 C -0.120 4.120 15 C -0.241 4.241 16 C -0.100 4.100 17 C -0.213 4.213 18 C 0.100 3.900 19 C -0.461 4.461 20 H 0.080 0.920 21 C 0.074 3.926 22 N -0.787 5.787 23 Si 0.910 3.090 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.095 4.095 28 H 0.083 0.917 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.383 0.617 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.284 0.716 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 12.889 -4.583 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.260 6.260 3 C -0.028 4.028 4 C 0.038 3.962 5 H 0.101 0.899 6 C -0.154 4.154 7 C 0.026 3.974 8 H 0.095 0.905 9 O -0.365 6.365 10 C -0.059 4.059 11 N -0.354 5.354 12 C 0.365 3.635 13 O -0.374 6.374 14 C -0.123 4.123 15 C -0.260 4.260 16 C -0.118 4.118 17 C -0.233 4.233 18 C 0.097 3.903 19 C -0.490 4.490 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.412 5.412 23 Si 0.735 3.265 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.186 1.186 27 C -0.115 4.115 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.231 0.769 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.129 12.317 -5.564 13.682 hybrid contribution 0.078 -0.673 0.535 0.864 sum -2.051 11.644 -5.029 12.848 Atomic orbital electron populations 1.22672 0.82751 1.02488 0.98615 1.88445 1.17897 1.24753 1.94931 1.22899 0.93635 0.86669 0.99586 1.21448 0.92501 0.93397 0.88860 0.89949 1.22570 0.96653 0.95787 1.00351 1.23059 0.96611 0.83623 0.94074 0.90549 1.86464 1.60450 1.28290 1.61256 1.23473 0.95777 0.91250 0.95364 1.48271 1.50947 1.15322 1.20833 1.18593 0.80730 0.78741 0.85453 1.90791 1.33238 1.54822 1.58548 1.19459 1.03995 0.95073 0.93774 1.21141 1.09954 0.97923 0.97003 1.20457 1.00122 0.95161 0.96084 1.21107 1.07631 0.92929 1.01649 1.17590 0.88560 0.93272 0.90841 1.19588 1.44764 0.90439 0.94211 0.90151 1.25939 0.92279 1.01734 0.94487 1.69782 1.33082 1.37423 1.00895 0.86276 0.79708 0.81208 0.79348 1.19148 1.20248 1.18603 1.21585 0.98829 0.92138 0.98937 0.89822 0.95125 0.94910 0.93255 0.93588 0.89422 0.89565 0.76923 0.90933 0.88010 0.87096 0.89068 0.88773 0.90537 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.34 -6.26 7.25 -59.61 -0.43 -6.69 16 3 C 0.05 0.73 5.36 37.16 0.20 0.93 16 4 C 0.14 2.07 3.32 -66.95 -0.22 1.85 16 5 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 6 C -0.12 -1.26 6.21 -24.90 -0.15 -1.42 16 7 C 0.09 0.96 4.43 -24.59 -0.11 0.85 16 8 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 9 O -0.56 -5.62 13.47 -35.23 -0.47 -6.09 16 10 C 0.07 0.90 4.73 -2.53 -0.01 0.89 16 11 N -0.62 -10.82 3.07 -164.11 -0.50 -11.32 16 12 C 0.57 12.97 7.50 -12.32 -0.09 12.88 16 13 O -0.50 -12.75 13.62 -19.05 -0.26 -13.01 16 14 C -0.12 -2.88 5.79 -105.04 -0.61 -3.48 16 15 C -0.24 -5.07 8.06 -38.92 -0.31 -5.38 16 16 C -0.10 -2.13 10.01 -39.73 -0.40 -2.52 16 17 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 18 C 0.10 2.66 5.57 -106.87 -0.60 2.07 16 19 C -0.46 -12.23 9.05 -37.73 -0.34 -12.57 16 20 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 21 C 0.07 1.89 5.15 -17.35 -0.09 1.80 16 22 N -0.79 -20.96 10.94 55.55 0.61 -20.35 16 23 Si 0.91 19.00 29.59 -169.99 -5.03 13.97 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 27 C -0.09 -2.56 8.23 -38.44 -0.32 -2.87 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 35 H 0.38 2.34 9.11 45.56 0.42 2.76 16 36 H 0.07 0.98 7.48 -51.93 -0.39 0.59 16 37 H 0.10 1.49 5.72 -51.93 -0.30 1.20 16 38 H 0.11 1.95 3.91 -52.48 -0.20 1.74 16 39 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 42 H 0.13 3.85 5.88 -52.48 -0.31 3.54 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -32.20 340.86 -8.24 -40.44 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.97 Total: 8.80 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.32 Total: -10.87 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.10 Total: -31.67 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.17 Total: -25.80 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.20 -8.24 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593816946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.749 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds