Wall clock time and date at job start Fri Apr 10 2020 17:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00300 * 2 1 4 4 C 1.53003 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.87457 * 54.56170 * 4 3 2 6 6 C 1.54317 * 109.88333 * 175.74173 * 4 3 2 7 7 C 1.55152 * 102.94561 * 141.60663 * 6 4 3 8 8 H 1.09000 * 111.03849 * 82.58549 * 7 6 4 9 9 O 1.42902 * 111.00526 * 206.42172 * 7 6 4 10 10 C 1.54908 * 101.58083 * 324.49466 * 7 6 4 11 11 N 1.47029 * 109.87854 * 293.54773 * 4 3 2 12 12 C 1.34770 * 125.65016 * 61.60301 * 11 4 3 13 13 O 1.21544 * 120.00033 * 356.18464 * 12 11 4 14 14 C 1.47883 * 119.99800 * 176.17557 * 12 11 4 15 15 C 1.39914 * 120.03007 * 20.50783 * 14 12 11 16 16 C 1.38326 * 120.36441 * 180.02562 * 15 14 12 17 17 C 1.37754 * 120.41129 * 359.97438 * 16 15 14 18 18 C 1.40751 * 120.03720 * 359.97438 * 17 16 15 19 19 C 1.41441 * 120.17412 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00074 * 24.69198 * 19 18 17 21 21 C 1.39936 * 119.99502 * 204.69298 * 19 18 17 22 22 N 1.30823 * 120.00330 * 17.11946 * 21 19 18 23 23 Si 1.86800 * 119.99740 * 197.11457 * 21 19 18 24 24 H 1.48500 * 109.46881 * 90.00459 * 23 21 19 25 25 H 1.48500 * 109.47146 * 209.99895 * 23 21 19 26 26 H 1.48501 * 109.47479 * 330.00490 * 23 21 19 27 27 C 1.38998 * 120.02514 * 200.23541 * 14 12 11 28 28 H 1.08993 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47099 * 59.99285 * 1 2 3 30 30 H 1.09001 * 109.46863 * 299.99839 * 1 2 3 31 31 H 1.09000 * 109.47166 * 300.00609 * 3 2 1 32 32 H 1.08999 * 109.46688 * 59.99924 * 3 2 1 33 33 H 1.09004 * 110.71979 * 259.97057 * 6 4 3 34 34 H 1.09000 * 110.72387 * 23.23897 * 6 4 3 35 35 H 0.96703 * 113.99704 * 173.64810 * 9 7 6 36 36 H 1.08997 * 110.36995 * 278.17188 * 10 7 6 37 37 H 1.09002 * 110.36737 * 155.84300 * 10 7 6 38 38 H 1.08007 * 119.81698 * 0.02562 * 15 14 12 39 39 H 1.08000 * 119.79937 * 179.97438 * 16 15 14 40 40 H 1.08001 * 119.98338 * 179.97438 * 17 16 15 41 41 H 0.97002 * 120.00170 * 180.02562 * 22 21 19 42 42 H 1.08008 * 120.20150 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8576 0.5630 -0.8360 6 6 4.1730 2.5858 -0.1084 7 6 5.4017 2.4820 0.8332 8 1 6.2455 2.0147 0.3255 9 8 5.7635 3.7656 1.3467 10 6 4.8551 1.5680 1.9581 11 7 3.9908 0.5942 1.2666 12 6 3.6703 -0.6334 1.7212 13 8 2.8905 -1.3275 1.0987 14 6 4.2677 -1.1360 2.9771 15 6 4.8037 -0.2376 3.9062 16 6 5.3647 -0.7001 5.0829 17 6 5.4017 -2.0502 5.3543 18 6 4.8664 -2.9691 4.4322 19 6 4.9024 -4.3558 4.7081 20 1 4.9547 -4.7020 5.7297 21 6 4.8703 -5.2793 3.6572 22 7 5.1422 -4.8920 2.4375 23 14 4.4393 -7.0650 3.9959 24 1 2.9710 -7.2513 3.8748 25 1 5.1314 -7.9364 3.0127 26 1 4.8725 -7.4270 5.3694 27 6 4.2920 -2.5010 3.2383 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 4.4877 2.7886 -1.1321 34 1 3.4818 3.3520 0.2426 35 1 6.4629 3.7394 2.0139 36 1 4.2738 2.1513 2.6721 37 1 5.6746 1.0563 2.4629 38 1 4.7794 0.8230 3.7033 39 1 5.7762 0.0015 5.7935 40 1 5.8417 -2.4038 6.2750 41 1 5.1196 -5.5321 1.7090 42 1 3.8751 -3.1979 2.5262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593816946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:04 Heat of formation + Delta-G solvation = -107.501658 kcal Electronic energy + Delta-G solvation = -25680.253983 eV Core-core repulsion = 22011.065688 eV Total energy + Delta-G solvation = -3669.188296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48328 -39.46036 -38.51085 -38.33379 -36.42902 -35.61316 -33.15209 -31.37156 -31.12540 -30.65989 -27.82613 -27.17228 -26.09920 -24.76596 -23.04203 -22.52798 -21.79443 -20.37876 -19.31313 -18.44686 -17.78500 -17.45612 -17.25068 -16.94894 -16.63814 -16.34630 -15.99592 -15.51843 -15.40999 -14.98477 -14.65787 -14.57624 -14.38651 -14.01468 -13.81336 -13.72736 -13.41250 -13.15122 -12.97048 -12.82479 -12.63804 -12.44450 -12.40672 -12.17760 -12.08054 -11.79718 -11.70479 -11.39244 -11.09803 -10.96536 -10.51444 -10.46881 -9.65034 -9.43253 -9.32433 -8.66789 -6.38485 0.47634 1.01153 1.34836 1.47567 1.49253 1.96988 2.15945 2.19637 2.77884 2.78489 3.39315 3.44171 3.59513 3.70870 3.97119 4.04545 4.09479 4.18757 4.33801 4.42298 4.44305 4.48440 4.50780 4.59194 4.62861 4.74176 4.79963 4.86524 4.89594 4.90783 5.08842 5.15446 5.21757 5.30470 5.46222 5.56305 5.86794 5.97043 6.06122 6.30044 6.38720 6.50195 6.66519 6.87178 6.88208 6.95697 7.41607 8.30195 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.004636 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.904255 B = 6037.893393 C = 7263.733811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.134 3.866 5 H 0.067 0.933 6 C -0.104 4.104 7 C 0.102 3.898 8 H 0.084 0.916 9 O -0.561 6.561 10 C 0.056 3.944 11 N -0.611 5.611 12 C 0.565 3.435 13 O -0.543 6.543 14 C -0.132 4.132 15 C -0.220 4.220 16 C -0.096 4.096 17 C -0.219 4.219 18 C 0.068 3.932 19 C -0.499 4.499 20 H 0.083 0.917 21 C 0.030 3.970 22 N -0.828 5.828 23 Si 0.982 3.018 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.250 1.250 27 C -0.133 4.133 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.401 0.599 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.285 0.715 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 16.027 -4.235 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C -0.031 4.031 4 C 0.031 3.969 5 H 0.085 0.915 6 C -0.141 4.141 7 C 0.042 3.958 8 H 0.101 0.899 9 O -0.369 6.369 10 C -0.067 4.067 11 N -0.347 5.347 12 C 0.356 3.644 13 O -0.420 6.420 14 C -0.135 4.135 15 C -0.239 4.239 16 C -0.114 4.114 17 C -0.239 4.239 18 C 0.066 3.934 19 C -0.528 4.528 20 H 0.101 0.899 21 C -0.184 4.184 22 N -0.454 5.454 23 Si 0.803 3.197 24 H -0.193 1.193 25 H -0.193 1.193 26 H -0.173 1.173 27 C -0.153 4.153 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.171 0.829 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.417 15.528 -5.198 16.436 hybrid contribution -0.099 -1.382 0.437 1.453 sum -1.516 14.145 -4.761 15.002 Atomic orbital electron populations 1.22761 0.81347 1.02383 1.00247 1.88397 1.19780 1.27217 1.95270 1.23066 0.93231 0.85602 1.01163 1.21763 0.93212 0.95194 0.86753 0.91462 1.22572 0.96420 0.93132 1.01990 1.22836 0.96786 0.83528 0.92685 0.89856 1.86447 1.61385 1.27039 1.62003 1.23689 0.95172 0.90987 0.96814 1.48182 1.50392 1.14183 1.21975 1.18466 0.80626 0.80246 0.85107 1.90764 1.35165 1.56596 1.59511 1.19799 1.03810 0.94590 0.95309 1.21679 1.06938 0.99570 0.95665 1.20957 0.98894 0.94823 0.96728 1.21415 1.07038 0.94021 1.01452 1.17934 0.89545 0.94277 0.91666 1.19862 1.47010 0.91284 0.94685 0.89921 1.26828 0.91511 1.06155 0.93934 1.69884 1.34689 1.38914 1.01891 0.85203 0.79098 0.75638 0.79797 1.19298 1.19272 1.17290 1.21363 1.01448 0.93216 0.99319 0.90983 0.92148 0.94421 0.89897 0.93473 0.86850 0.88323 0.74764 0.89580 0.88668 0.82886 0.84311 0.87484 0.90405 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -14.37 7.25 -125.67 -0.91 -15.28 16 3 C 0.05 1.29 5.36 71.98 0.39 1.67 16 4 C 0.13 3.70 3.32 45.34 0.15 3.85 16 5 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 6 C -0.10 -1.85 6.21 31.78 0.20 -1.66 16 7 C 0.10 1.86 4.43 31.98 0.14 2.00 16 8 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 9 O -0.56 -8.57 13.47 -148.98 -2.01 -10.58 16 10 C 0.06 1.38 4.73 86.85 0.41 1.79 16 11 N -0.61 -20.89 3.07 -791.39 -2.43 -23.31 16 12 C 0.56 26.25 7.50 86.80 0.65 26.90 16 13 O -0.54 -29.29 13.62 19.45 0.26 -29.02 16 14 C -0.13 -6.47 5.79 -20.14 -0.12 -6.59 16 15 C -0.22 -8.82 8.06 22.70 0.18 -8.64 16 16 C -0.10 -3.84 10.01 22.18 0.22 -3.62 16 17 C -0.22 -10.43 9.78 22.77 0.22 -10.21 16 18 C 0.07 3.78 5.57 -21.32 -0.12 3.66 16 19 C -0.50 -27.80 9.05 23.47 0.21 -27.58 16 20 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 21 C 0.03 1.62 5.15 85.25 0.44 2.05 16 22 N -0.83 -47.05 10.94 21.82 0.24 -46.81 16 23 Si 0.98 40.58 29.59 68.60 2.03 42.61 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 27 C -0.13 -7.60 8.23 23.01 0.19 -7.42 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.10 1.59 7.85 -2.39 -0.02 1.57 16 35 H 0.40 2.98 9.11 -74.06 -0.67 2.30 16 36 H 0.09 1.95 7.48 -2.39 -0.02 1.93 16 37 H 0.10 2.49 5.72 -2.39 -0.01 2.48 16 38 H 0.15 4.80 3.91 -2.91 -0.01 4.78 16 39 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 42 H 0.09 6.02 5.88 -2.91 -0.02 6.00 16 Total: -1.00 -76.40 340.86 1.98 -74.42 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.37 Total: 29.66 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.42 Total: -21.69 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -2.19 Total: -70.12 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.65 Total: -54.88 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -76.40 1.98 -74.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593816946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.081 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds