Wall clock time and date at job start Fri Apr 10 2020 17:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46966 * 26.70743 * 3 2 1 5 5 C 1.37095 * 119.99796 * 266.70976 * 4 3 2 6 6 H 1.08010 * 119.99686 * 199.50679 * 5 4 3 7 7 C 1.38945 * 120.00365 * 19.50613 * 5 4 3 8 8 N 1.31417 * 119.99705 * 27.22794 * 7 5 4 9 9 Si 1.86803 * 120.00281 * 207.22399 * 7 5 4 10 10 H 1.48498 * 109.47150 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47132 * 300.00196 * 9 7 5 12 12 H 1.48498 * 109.46874 * 59.99817 * 9 7 5 13 13 C 1.34779 * 119.99819 * 86.71125 * 4 3 2 14 14 O 1.21292 * 119.99974 * 176.68716 * 13 4 3 15 15 C 1.50699 * 120.00056 * 356.69446 * 13 4 3 16 16 H 1.08997 * 109.70975 * 24.52868 * 15 13 4 17 17 C 1.53063 * 109.70700 * 263.94238 * 15 13 4 18 18 C 1.50163 * 110.12641 * 191.67524 * 17 15 13 19 19 O 1.21282 * 118.25955 * 197.21951 * 18 17 15 20 20 N 1.33521 * 123.47601 * 17.23174 * 18 17 15 21 21 C 1.45466 * 123.69978 * 357.45308 * 20 18 17 22 22 H 1.09002 * 108.23658 * 262.42009 * 21 20 18 23 23 C 1.52481 * 111.02224 * 143.76663 * 21 20 18 24 24 C 1.52974 * 109.94754 * 294.66776 * 23 21 20 25 25 C 1.53078 * 109.13962 * 300.36574 * 24 23 21 26 26 C 1.52895 * 109.25216 * 60.93100 * 25 24 23 27 27 C 1.52686 * 110.80878 * 20.28901 * 21 20 18 28 28 H 1.09002 * 109.98379 * 188.00271 * 27 21 20 29 29 H 1.08998 * 109.46857 * 266.70773 * 3 2 1 30 30 H 1.08995 * 109.46994 * 146.70711 * 3 2 1 31 31 H 0.96998 * 119.99786 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.36150 * 311.87094 * 17 15 13 33 33 H 1.08996 * 109.36528 * 71.60425 * 17 15 13 34 34 H 0.97003 * 118.15223 * 177.46947 * 20 18 17 35 35 H 1.09001 * 109.39232 * 54.81452 * 23 21 20 36 36 H 1.08999 * 109.38618 * 174.52306 * 23 21 20 37 37 H 1.08997 * 109.52881 * 60.26121 * 24 23 21 38 38 H 1.09007 * 109.52843 * 180.46964 * 24 23 21 39 39 H 1.08996 * 109.51025 * 180.86650 * 25 24 23 40 40 H 1.09002 * 109.50620 * 300.95701 * 25 24 23 41 41 H 1.09009 * 109.41748 * 59.48635 * 26 25 24 42 42 H 1.09003 * 109.42132 * 179.35313 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2330 -0.6208 5 6 3.3901 -2.3226 0.1579 6 1 4.0304 -3.1035 -0.2253 7 6 2.8636 -2.4224 1.4398 8 7 1.7268 -1.8308 1.7311 9 14 3.7714 -3.3975 2.7492 10 1 3.0068 -3.3495 4.0213 11 1 3.9109 -4.8085 2.3079 12 1 5.1186 -2.8092 2.9594 13 6 3.2584 -1.2967 -1.9573 14 8 3.7197 -2.2968 -2.4655 15 6 2.8659 -0.1253 -2.8204 16 1 2.8932 0.7911 -2.2309 17 6 1.4552 -0.3415 -3.3736 18 6 1.1626 0.6640 -4.4498 19 8 0.0064 0.8434 -4.7690 20 7 2.1078 1.3708 -5.0741 21 6 3.5234 1.2893 -4.7493 22 1 3.7694 2.1185 -4.0858 23 6 4.3806 1.4121 -6.0043 24 6 4.1386 0.2116 -6.9211 25 6 4.5015 -1.0731 -6.1721 26 6 3.6116 -1.2043 -4.9357 27 6 3.8357 -0.0076 -4.0064 28 1 4.8643 0.0079 -3.6460 29 1 2.9713 0.0598 1.0260 30 1 2.9709 0.8598 -0.5641 31 1 1.3594 -1.9001 2.6262 32 1 1.3797 -1.3467 -3.7881 33 1 0.7298 -0.2273 -2.5682 34 1 1.8352 1.9728 -5.7842 35 1 4.1197 2.3292 -6.5325 36 1 5.4328 1.4455 -5.7220 37 1 3.0882 0.1802 -7.2106 38 1 4.7605 0.3021 -7.8117 39 1 4.3458 -1.9316 -6.8253 40 1 5.5470 -1.0332 -5.8663 41 1 2.5662 -1.2340 -5.2430 42 1 3.8599 -2.1242 -4.4064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597032456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:09 Heat of formation + Delta-G solvation = -42.931648 kcal Electronic energy + Delta-G solvation = -26654.736543 eV Core-core repulsion = 23020.640964 eV Total energy + Delta-G solvation = -3634.095579 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14840 -38.80737 -37.83830 -35.87572 -34.46899 -34.06200 -33.35978 -31.90790 -29.76673 -29.11041 -27.57366 -25.97020 -24.15121 -22.70566 -22.37140 -20.66582 -19.15986 -18.24211 -17.89059 -16.82190 -16.57564 -16.37167 -15.94607 -15.53772 -15.14240 -14.83459 -14.38148 -14.17467 -13.72889 -13.66744 -13.19721 -13.13144 -12.89514 -12.75547 -12.51481 -12.21422 -12.07301 -11.81152 -11.61395 -11.47645 -11.30202 -11.14018 -11.11688 -10.93876 -10.64961 -10.49105 -10.42567 -10.30409 -10.17875 -9.96957 -9.74623 -9.28848 -8.93445 -8.37601 -8.09289 -6.58217 -4.05136 2.81944 3.06294 3.19277 3.20942 3.35373 3.48347 3.70625 3.95089 4.06971 4.44252 4.53907 4.63118 4.78028 4.85844 4.97457 5.02790 5.07992 5.17690 5.23594 5.35474 5.41060 5.50918 5.56609 5.58280 5.64433 5.73057 5.85863 5.98009 5.99896 6.02940 6.06533 6.17207 6.27234 6.33511 6.34920 6.54992 6.82439 6.91546 7.42262 7.44323 7.83696 8.20674 8.36991 8.73686 8.93445 9.12571 9.66129 10.47186 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.005091 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.749069 B = 5498.986546 C = 6403.942643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.237 3.763 3 C 0.218 3.782 4 N -0.436 5.436 5 C -0.325 4.325 6 H 0.110 0.890 7 C 0.038 3.962 8 N -0.862 5.862 9 Si 0.921 3.079 10 H -0.285 1.285 11 H -0.272 1.272 12 H -0.271 1.271 13 C 0.463 3.537 14 O -0.562 6.562 15 C -0.108 4.108 16 H 0.087 0.913 17 C -0.123 4.123 18 C 0.529 3.471 19 O -0.560 6.560 20 N -0.711 5.711 21 C 0.143 3.857 22 H 0.068 0.932 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.131 4.131 27 C -0.072 4.072 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.275 0.725 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.394 0.606 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.842 8.350 -10.113 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.082 4.082 3 C 0.091 3.909 4 N -0.155 5.155 5 C -0.451 4.451 6 H 0.127 0.873 7 C -0.168 4.168 8 N -0.499 5.499 9 Si 0.748 3.252 10 H -0.211 1.211 11 H -0.197 1.197 12 H -0.197 1.197 13 C 0.251 3.749 14 O -0.445 6.445 15 C -0.130 4.130 16 H 0.105 0.895 17 C -0.163 4.163 18 C 0.317 3.683 19 O -0.439 6.439 20 N -0.363 5.363 21 C 0.037 3.963 22 H 0.086 0.914 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.168 4.168 27 C -0.091 4.091 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.737 7.785 -10.132 14.445 hybrid contribution 0.555 -0.182 0.716 0.924 sum 7.292 7.603 -9.417 14.130 Atomic orbital electron populations 1.80925 1.13420 1.09474 1.10064 1.29151 0.95284 0.91903 0.91822 1.18711 0.82056 0.88267 1.01901 1.43657 1.56336 1.11023 1.04492 1.19598 1.29174 1.01505 0.94855 0.87262 1.25278 0.94385 0.97933 0.99215 1.69903 1.14106 1.43946 1.21919 0.86067 0.79588 0.80180 0.79407 1.21082 1.19738 1.19655 1.19766 0.84385 0.88613 0.82102 1.90447 1.48799 1.33598 1.71652 1.21532 0.95034 0.99532 0.96878 0.89467 1.21587 0.97314 0.99715 0.97704 1.20154 0.84642 0.80931 0.82578 1.90740 1.20104 1.67029 1.66014 1.45489 1.06917 1.44741 1.39196 1.20765 0.80403 0.98583 0.96506 0.91444 1.21722 1.00202 0.98685 0.95637 1.21550 1.01531 0.94961 0.97733 1.21535 1.00026 0.96802 0.97118 1.21989 0.99269 1.00427 0.95123 1.21303 0.99864 0.93880 0.94089 0.88714 0.86446 0.89386 0.91474 0.87368 0.88147 0.77021 0.91646 0.90185 0.92071 0.92251 0.92277 0.91965 0.92730 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.79 18.43 42.15 0.78 -10.02 16 2 C 0.24 5.06 11.95 -20.76 -0.25 4.81 16 3 C 0.22 4.04 4.88 -6.83 -0.03 4.01 16 4 N -0.44 -9.39 2.59 -117.93 -0.30 -9.69 16 5 C -0.32 -7.89 9.25 -14.94 -0.14 -8.03 16 6 H 0.11 2.81 7.44 -52.48 -0.39 2.42 16 7 C 0.04 0.89 4.69 -17.47 -0.08 0.81 16 8 N -0.86 -21.28 9.80 55.50 0.54 -20.73 16 9 Si 0.92 18.84 29.63 -169.99 -5.04 13.80 16 10 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 13 C 0.46 9.36 6.57 -10.99 -0.07 9.29 16 14 O -0.56 -12.88 13.48 5.55 0.07 -12.80 16 15 C -0.11 -1.69 1.87 -91.40 -0.17 -1.86 16 16 H 0.09 1.20 5.69 -51.93 -0.30 0.91 16 17 C -0.12 -2.13 4.68 -28.11 -0.13 -2.26 16 18 C 0.53 8.68 6.84 -11.80 -0.08 8.60 16 19 O -0.56 -11.32 17.79 5.56 0.10 -11.22 16 20 N -0.71 -8.72 4.66 -55.38 -0.26 -8.98 16 21 C 0.14 1.47 2.89 -68.91 -0.20 1.27 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 C -0.12 -1.02 5.54 -27.01 -0.15 -1.17 16 24 C -0.12 -1.12 5.84 -26.70 -0.16 -1.28 16 25 C -0.12 -1.31 5.92 -26.74 -0.16 -1.46 16 26 C -0.13 -1.84 4.27 -26.70 -0.11 -1.95 16 27 C -0.07 -0.93 2.06 -90.36 -0.19 -1.12 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.12 2.18 6.93 -51.93 -0.36 1.82 16 30 H 0.09 1.22 5.99 -51.93 -0.31 0.91 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 32 H 0.11 1.98 6.76 -51.93 -0.35 1.63 16 33 H 0.10 1.98 6.76 -51.93 -0.35 1.63 16 34 H 0.39 4.27 8.68 -40.82 -0.35 3.91 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.82 5.43 -51.92 -0.28 0.54 16 42 H 0.11 1.89 5.46 -51.93 -0.28 1.61 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -30.72 327.26 -6.57 -37.29 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.48 Total: 7.77 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -1.92 Total: 9.65 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.76 Total: -49.42 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.17 Total: -24.03 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.04 Total: 13.80 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.72 -6.57 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.642 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds