Wall clock time and date at job start Fri Apr 10 2020 17:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46966 * 26.70743 * 3 2 1 5 5 C 1.37095 * 119.99796 * 266.70976 * 4 3 2 6 6 H 1.08010 * 119.99686 * 199.50679 * 5 4 3 7 7 C 1.38945 * 120.00365 * 19.50613 * 5 4 3 8 8 N 1.31417 * 119.99705 * 27.22794 * 7 5 4 9 9 Si 1.86803 * 120.00281 * 207.22399 * 7 5 4 10 10 H 1.48498 * 109.47150 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47132 * 300.00196 * 9 7 5 12 12 H 1.48498 * 109.46874 * 59.99817 * 9 7 5 13 13 C 1.34779 * 119.99819 * 86.71125 * 4 3 2 14 14 O 1.21292 * 119.99974 * 176.68716 * 13 4 3 15 15 C 1.50699 * 120.00056 * 356.69446 * 13 4 3 16 16 H 1.08997 * 109.70975 * 24.52868 * 15 13 4 17 17 C 1.53063 * 109.70700 * 263.94238 * 15 13 4 18 18 C 1.50163 * 110.12641 * 191.67524 * 17 15 13 19 19 O 1.21282 * 118.25955 * 197.21951 * 18 17 15 20 20 N 1.33521 * 123.47601 * 17.23174 * 18 17 15 21 21 C 1.45466 * 123.69978 * 357.45308 * 20 18 17 22 22 H 1.09002 * 108.23658 * 262.42009 * 21 20 18 23 23 C 1.52481 * 111.02224 * 143.76663 * 21 20 18 24 24 C 1.52974 * 109.94754 * 294.66776 * 23 21 20 25 25 C 1.53078 * 109.13962 * 300.36574 * 24 23 21 26 26 C 1.52895 * 109.25216 * 60.93100 * 25 24 23 27 27 C 1.52686 * 110.80878 * 20.28901 * 21 20 18 28 28 H 1.09002 * 109.98379 * 188.00271 * 27 21 20 29 29 H 1.08998 * 109.46857 * 266.70773 * 3 2 1 30 30 H 1.08995 * 109.46994 * 146.70711 * 3 2 1 31 31 H 0.96998 * 119.99786 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.36150 * 311.87094 * 17 15 13 33 33 H 1.08996 * 109.36528 * 71.60425 * 17 15 13 34 34 H 0.97003 * 118.15223 * 177.46947 * 20 18 17 35 35 H 1.09001 * 109.39232 * 54.81452 * 23 21 20 36 36 H 1.08999 * 109.38618 * 174.52306 * 23 21 20 37 37 H 1.08997 * 109.52881 * 60.26121 * 24 23 21 38 38 H 1.09007 * 109.52843 * 180.46964 * 24 23 21 39 39 H 1.08996 * 109.51025 * 180.86650 * 25 24 23 40 40 H 1.09002 * 109.50620 * 300.95701 * 25 24 23 41 41 H 1.09009 * 109.41748 * 59.48635 * 26 25 24 42 42 H 1.09003 * 109.42132 * 179.35313 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2330 -0.6208 5 6 3.3901 -2.3226 0.1579 6 1 4.0304 -3.1035 -0.2253 7 6 2.8636 -2.4224 1.4398 8 7 1.7268 -1.8308 1.7311 9 14 3.7714 -3.3975 2.7492 10 1 3.0068 -3.3495 4.0213 11 1 3.9109 -4.8085 2.3079 12 1 5.1186 -2.8092 2.9594 13 6 3.2584 -1.2967 -1.9573 14 8 3.7197 -2.2968 -2.4655 15 6 2.8659 -0.1253 -2.8204 16 1 2.8932 0.7911 -2.2309 17 6 1.4552 -0.3415 -3.3736 18 6 1.1626 0.6640 -4.4498 19 8 0.0064 0.8434 -4.7690 20 7 2.1078 1.3708 -5.0741 21 6 3.5234 1.2893 -4.7493 22 1 3.7694 2.1185 -4.0858 23 6 4.3806 1.4121 -6.0043 24 6 4.1386 0.2116 -6.9211 25 6 4.5015 -1.0731 -6.1721 26 6 3.6116 -1.2043 -4.9357 27 6 3.8357 -0.0076 -4.0064 28 1 4.8643 0.0079 -3.6460 29 1 2.9713 0.0598 1.0260 30 1 2.9709 0.8598 -0.5641 31 1 1.3594 -1.9001 2.6262 32 1 1.3797 -1.3467 -3.7881 33 1 0.7298 -0.2273 -2.5682 34 1 1.8352 1.9728 -5.7842 35 1 4.1197 2.3292 -6.5325 36 1 5.4328 1.4455 -5.7220 37 1 3.0882 0.1802 -7.2106 38 1 4.7605 0.3021 -7.8117 39 1 4.3458 -1.9316 -6.8253 40 1 5.5470 -1.0332 -5.8663 41 1 2.5662 -1.2340 -5.2430 42 1 3.8599 -2.1242 -4.4064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597032456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:09 Heat of formation + Delta-G solvation = -63.356771 kcal Electronic energy + Delta-G solvation = -26655.622243 eV Core-core repulsion = 23020.640964 eV Total energy + Delta-G solvation = -3634.981279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.36841 -40.36586 -39.03931 -37.55990 -36.16882 -35.22600 -34.61349 -33.65944 -30.73326 -30.23306 -29.20987 -27.52117 -25.60860 -23.63979 -23.53833 -21.70959 -20.61899 -19.79155 -19.24194 -18.23500 -18.07988 -17.81674 -17.09726 -16.61374 -16.51338 -16.36045 -15.94798 -15.33058 -15.09666 -14.81650 -14.75559 -14.56929 -14.26025 -14.03499 -13.74723 -13.52147 -13.40567 -13.20167 -13.15603 -12.84169 -12.72029 -12.55732 -12.40291 -12.26434 -12.11924 -12.07179 -11.82336 -11.36911 -11.22249 -11.14141 -11.08076 -11.02431 -10.03326 -9.91620 -9.83948 -8.40492 -5.92928 1.40258 1.50347 1.50930 1.59259 1.81017 2.05424 2.27843 2.30198 2.38347 2.97217 3.02023 3.44999 3.55303 3.62945 3.71200 3.77285 4.01287 4.04541 4.14013 4.24492 4.37729 4.42403 4.48900 4.57522 4.62472 4.68565 4.71837 4.77639 4.88664 5.04050 5.08765 5.22536 5.31512 5.32015 5.43570 5.51305 5.59274 5.65291 5.88864 6.07899 6.27376 6.41146 7.05924 7.15446 7.16760 7.38269 7.96063 8.62718 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.005091 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.749069 B = 5498.986546 C = 6403.942643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.251 3.749 3 C 0.217 3.783 4 N -0.451 5.451 5 C -0.345 4.345 6 H 0.086 0.914 7 C 0.009 3.991 8 N -0.885 5.885 9 Si 0.980 3.020 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.257 1.257 13 C 0.462 3.538 14 O -0.593 6.593 15 C -0.097 4.097 16 H 0.116 0.884 17 C -0.118 4.118 18 C 0.534 3.466 19 O -0.605 6.605 20 N -0.690 5.690 21 C 0.141 3.859 22 H 0.102 0.898 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.129 4.129 27 C -0.069 4.069 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.273 0.727 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.407 0.593 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.319 10.934 -11.052 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.066 4.066 3 C 0.090 3.910 4 N -0.170 5.170 5 C -0.472 4.472 6 H 0.104 0.896 7 C -0.194 4.194 8 N -0.522 5.522 9 Si 0.805 3.195 10 H -0.211 1.211 11 H -0.209 1.209 12 H -0.181 1.181 13 C 0.252 3.748 14 O -0.478 6.478 15 C -0.119 4.119 16 H 0.134 0.866 17 C -0.158 4.158 18 C 0.322 3.678 19 O -0.487 6.487 20 N -0.341 5.341 21 C 0.037 3.963 22 H 0.119 0.881 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.166 4.166 27 C -0.088 4.088 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.245 0.755 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.265 10.402 -11.093 17.808 hybrid contribution -0.182 -1.096 0.930 1.449 sum 9.083 9.306 -10.163 16.505 Atomic orbital electron populations 1.80923 1.14949 1.10927 1.11677 1.29749 0.95904 0.90559 0.90421 1.19112 0.80151 0.88766 1.02952 1.43826 1.56754 1.11455 1.05005 1.19508 1.29470 1.02387 0.95829 0.89609 1.25869 0.94568 0.98734 1.00266 1.69991 1.14933 1.45357 1.21951 0.85189 0.79091 0.78296 0.76939 1.21105 1.20884 1.18097 1.20571 0.82666 0.89472 0.82074 1.90453 1.49664 1.35325 1.72316 1.21523 0.94524 0.98330 0.97511 0.86642 1.21415 0.97723 0.99272 0.97428 1.19830 0.84627 0.80938 0.82443 1.90721 1.22068 1.68547 1.67401 1.45374 1.07293 1.43205 1.38213 1.21040 0.79137 0.97737 0.98372 0.88066 1.21754 1.00812 0.98962 0.94038 1.21538 1.01088 0.94332 0.98597 1.21507 0.99816 0.98077 0.95753 1.21851 0.98791 0.99483 0.96510 1.21365 0.99753 0.94911 0.92797 0.87177 0.86294 0.83942 0.91750 0.89543 0.90787 0.75525 0.89044 0.87971 0.93458 0.90189 0.92896 0.90861 0.94641 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.11 18.43 20.01 0.37 -23.74 16 2 C 0.25 10.72 11.95 89.44 1.07 11.79 16 3 C 0.22 7.74 4.88 84.57 0.41 8.15 16 4 N -0.45 -19.41 2.59 -645.41 -1.67 -21.08 16 5 C -0.34 -17.04 9.25 84.04 0.78 -16.26 16 6 H 0.09 4.57 7.44 -2.91 -0.02 4.55 16 7 C 0.01 0.43 4.69 84.92 0.40 0.83 16 8 N -0.88 -44.06 9.80 21.66 0.21 -43.85 16 9 Si 0.98 38.82 29.63 68.60 2.03 40.85 16 10 H -0.29 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 13 C 0.46 18.75 6.57 87.66 0.58 19.33 16 14 O -0.59 -28.02 13.48 -3.07 -0.04 -28.06 16 15 C -0.10 -2.92 1.87 -11.30 -0.02 -2.94 16 16 H 0.12 2.78 5.69 -2.39 -0.01 2.77 16 17 C -0.12 -4.15 4.68 29.70 0.14 -4.01 16 18 C 0.53 17.18 6.84 87.68 0.60 17.78 16 19 O -0.60 -24.65 17.79 -3.03 -0.05 -24.71 16 20 N -0.69 -14.90 4.66 -448.20 -2.09 -16.99 16 21 C 0.14 2.28 2.89 44.91 0.13 2.41 16 22 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 23 C -0.12 -1.29 5.54 30.41 0.17 -1.12 16 24 C -0.12 -1.78 5.84 30.61 0.18 -1.60 16 25 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 26 C -0.13 -3.57 4.27 30.61 0.13 -3.44 16 27 C -0.07 -1.61 2.06 -10.63 -0.02 -1.63 16 28 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.12 4.27 6.93 -2.39 -0.02 4.25 16 30 H 0.14 3.43 5.99 -2.39 -0.01 3.42 16 31 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 32 H 0.09 3.38 6.76 -2.39 -0.02 3.37 16 33 H 0.07 3.01 6.76 -2.39 -0.02 2.99 16 34 H 0.41 7.40 8.68 -92.71 -0.80 6.59 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.86 7.87 -2.39 -0.02 0.84 16 38 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.03 1.09 5.43 -2.38 -0.01 1.08 16 42 H 0.07 2.55 5.46 -2.39 -0.01 2.54 16 Total: -1.00 -71.32 327.26 3.75 -67.57 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.27 Total: 22.86 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 4.72 Total: 27.14 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -3.18 Total: -105.66 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.10 Total: -52.77 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -71.32 3.75 -67.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.217 kcal (2) G-P(sol) polarization free energy of solvation -71.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds