Wall clock time and date at job start Fri Apr 10 2020 17:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46901 * 91.96660 * 3 2 1 5 5 C 1.37098 * 120.00073 * 268.85300 * 4 3 2 6 6 H 1.08004 * 120.00062 * 201.67279 * 5 4 3 7 7 C 1.38940 * 119.99984 * 21.66241 * 5 4 3 8 8 N 1.31411 * 120.00288 * 23.74727 * 7 5 4 9 9 Si 1.86805 * 120.00100 * 203.74299 * 7 5 4 10 10 H 1.48504 * 109.46782 * 90.00258 * 9 7 5 11 11 H 1.48503 * 109.47126 * 210.00228 * 9 7 5 12 12 H 1.48497 * 109.47388 * 330.00456 * 9 7 5 13 13 C 1.34780 * 119.99958 * 88.84699 * 4 3 2 14 14 O 1.21293 * 119.99688 * 185.12958 * 13 4 3 15 15 C 1.50700 * 119.99996 * 4.85670 * 13 4 3 16 16 H 1.08999 * 109.70873 * 324.09840 * 15 13 4 17 17 C 1.53059 * 109.71109 * 203.50531 * 15 13 4 18 18 C 1.50159 * 110.13406 * 288.95065 * 17 15 13 19 19 O 1.21283 * 118.26420 * 162.81189 * 18 17 15 20 20 N 1.33526 * 123.47359 * 342.78894 * 18 17 15 21 21 C 1.45460 * 123.69930 * 2.49305 * 20 18 17 22 22 H 1.08996 * 108.23623 * 98.23537 * 21 20 18 23 23 C 1.52477 * 111.03227 * 216.26492 * 21 20 18 24 24 C 1.52835 * 110.00960 * 65.44870 * 23 21 20 25 25 C 1.53072 * 109.21601 * 59.51428 * 24 23 21 26 26 C 1.52906 * 109.25376 * 299.16157 * 25 24 23 27 27 C 1.52772 * 110.81514 * 339.75187 * 21 20 18 28 28 H 1.09007 * 110.02301 * 171.99329 * 27 21 20 29 29 H 1.08999 * 109.47289 * 331.96462 * 3 2 1 30 30 H 1.08999 * 109.46836 * 211.96297 * 3 2 1 31 31 H 0.97002 * 120.00532 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.36067 * 49.14969 * 17 15 13 33 33 H 1.08999 * 109.36320 * 168.87599 * 17 15 13 34 34 H 0.97000 * 118.15087 * 182.51824 * 20 18 17 35 35 H 1.08998 * 109.39231 * 185.47981 * 23 21 20 36 36 H 1.09001 * 109.38688 * 305.18149 * 23 21 20 37 37 H 1.08998 * 109.42162 * 299.63719 * 24 23 21 38 38 H 1.09004 * 109.61823 * 179.51039 * 24 23 21 39 39 H 1.09001 * 109.50469 * 179.22707 * 25 24 23 40 40 H 1.08997 * 109.50695 * 59.09548 * 25 24 23 41 41 H 1.09003 * 109.41767 * 300.52002 * 26 25 24 42 42 H 1.08994 * 109.41773 * 180.71730 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.0483 -1.3804 5 6 3.3477 -1.1161 -2.0592 6 1 4.0148 -1.1128 -2.9085 7 6 2.7445 -2.3004 -1.6543 8 7 1.6232 -2.2661 -0.9698 9 14 3.5272 -3.9415 -2.0828 10 1 4.4647 -4.3399 -1.0022 11 1 2.4683 -4.9729 -2.2249 12 1 4.2709 -3.8162 -3.3620 13 6 3.2982 1.2368 -1.9832 14 8 3.6127 1.2772 -3.1540 15 6 3.1273 2.5154 -1.2042 16 1 2.3070 2.4067 -0.4947 17 6 2.8296 3.6693 -2.1647 18 6 4.0585 4.0132 -2.9561 19 8 3.9257 4.6713 -3.9662 20 7 5.2899 3.6332 -2.6065 21 6 5.5795 2.7999 -1.4500 22 1 5.6982 1.7716 -1.7915 23 6 6.8852 3.2214 -0.7849 24 6 6.7449 4.6270 -0.2014 25 6 5.6140 4.6337 0.8302 26 6 4.3036 4.2459 0.1443 27 6 4.4257 2.8398 -0.4494 28 1 4.5906 2.1064 0.3399 29 1 2.9718 -0.9062 0.4830 30 1 2.9709 0.8727 0.5440 31 1 1.2018 -3.0929 -0.6874 32 1 2.0315 3.3752 -2.8464 33 1 2.5137 4.5424 -1.5938 34 1 6.0333 3.9299 -3.1544 35 1 7.1259 2.5220 0.0157 36 1 7.6867 3.2132 -1.5236 37 1 6.5124 5.3300 -1.0013 38 1 7.6786 4.9184 0.2798 39 1 5.5188 5.6311 1.2594 40 1 5.8375 3.9166 1.6200 41 1 4.0868 4.9579 -0.6521 42 1 3.4940 4.2622 0.8739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597032458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:13 Heat of formation + Delta-G solvation = -68.380062 kcal Electronic energy + Delta-G solvation = -26921.501269 eV Core-core repulsion = 23286.302164 eV Total energy + Delta-G solvation = -3635.199105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.42673 -40.13249 -38.90784 -37.54367 -36.07672 -35.05185 -34.72319 -33.63457 -30.70077 -30.15858 -29.15940 -27.51236 -25.50030 -23.65564 -23.23648 -21.92492 -20.67607 -19.72235 -19.27806 -18.16054 -17.87793 -17.67427 -16.99132 -16.69102 -16.58929 -16.14535 -15.83864 -15.33229 -15.00338 -14.79081 -14.65135 -14.53530 -14.13143 -13.96325 -13.79417 -13.39829 -13.23876 -13.15820 -13.08915 -12.86076 -12.83118 -12.49236 -12.35732 -12.24301 -12.19227 -12.07923 -11.80236 -11.33565 -11.28851 -11.09327 -11.06662 -10.63134 -10.26950 -9.88636 -9.83110 -8.39651 -5.97121 1.38620 1.47937 1.57282 1.73908 1.84531 2.12457 2.33452 2.40639 2.48658 2.99333 3.08952 3.53767 3.57523 3.67439 3.69072 3.80032 4.05423 4.12274 4.25628 4.31266 4.45825 4.50877 4.53868 4.59008 4.69766 4.77094 4.80017 4.81528 4.84875 5.00911 5.09869 5.25204 5.32542 5.36733 5.42993 5.49077 5.50393 5.65688 5.96035 6.06507 6.41397 6.48509 7.14007 7.16701 7.32441 7.37712 7.95969 8.62439 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.005320 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.508986 B = 5262.173546 C = 5396.075081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.255 3.745 3 C 0.221 3.779 4 N -0.451 5.451 5 C -0.336 4.336 6 H 0.077 0.923 7 C 0.008 3.992 8 N -0.888 5.888 9 Si 0.980 3.020 10 H -0.254 1.254 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.457 3.543 14 O -0.608 6.608 15 C -0.101 4.101 16 H 0.116 0.884 17 C -0.114 4.114 18 C 0.538 3.462 19 O -0.622 6.622 20 N -0.691 5.691 21 C 0.141 3.859 22 H 0.044 0.956 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.116 4.116 27 C -0.078 4.078 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.272 0.728 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.395 0.605 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.695 10.222 12.389 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.062 4.062 3 C 0.095 3.905 4 N -0.171 5.171 5 C -0.463 4.463 6 H 0.095 0.905 7 C -0.195 4.195 8 N -0.526 5.526 9 Si 0.806 3.194 10 H -0.178 1.178 11 H -0.218 1.218 12 H -0.206 1.206 13 C 0.247 3.753 14 O -0.492 6.492 15 C -0.123 4.123 16 H 0.134 0.866 17 C -0.154 4.154 18 C 0.327 3.673 19 O -0.506 6.506 20 N -0.339 5.339 21 C 0.036 3.964 22 H 0.062 0.938 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.097 4.097 28 H 0.143 0.857 29 H 0.135 0.865 30 H 0.162 0.838 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.230 0.770 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.813 10.307 11.539 18.321 hybrid contribution 0.378 -1.400 -1.384 2.005 sum 10.191 8.907 10.155 16.921 Atomic orbital electron populations 1.80876 1.15004 1.13694 1.09524 1.29659 0.95870 0.89186 0.91502 1.19070 0.80246 1.06192 0.84994 1.43746 1.57318 1.04838 1.11203 1.19484 1.26548 0.84836 1.15461 0.90494 1.25847 0.94189 1.02287 0.97158 1.69843 1.14311 1.29424 1.38990 0.85118 0.77927 0.77437 0.78965 1.17841 1.21825 1.20586 1.20870 0.81687 0.85444 0.87257 1.90587 1.52970 1.87199 1.18479 1.21589 1.01950 0.91065 0.97704 0.86608 1.21481 0.95279 1.00203 0.98435 1.20115 0.85911 0.76922 0.84329 1.90654 1.87106 1.44209 1.28638 1.45208 1.07496 1.51791 1.29450 1.20811 0.96789 0.93262 0.85504 0.93827 1.21718 0.94276 0.98844 1.00898 1.21504 0.99726 0.95687 0.98601 1.21518 0.93165 1.02541 0.97830 1.21716 0.99936 0.93474 1.00236 1.21616 0.90290 1.00914 0.96927 0.85652 0.86477 0.83785 0.91751 0.91199 0.84584 0.76976 0.88211 0.91314 0.93456 0.90247 0.90851 0.89810 0.93041 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.33 18.54 20.01 0.37 -22.96 16 2 C 0.26 10.41 12.55 89.44 1.12 11.53 16 3 C 0.22 7.42 4.82 84.57 0.41 7.83 16 4 N -0.45 -19.09 2.58 -645.41 -1.67 -20.76 16 5 C -0.34 -16.65 9.19 84.04 0.77 -15.88 16 6 H 0.08 4.21 7.52 -2.91 -0.02 4.18 16 7 C 0.01 0.38 4.79 84.92 0.41 0.78 16 8 N -0.89 -43.70 9.51 21.66 0.21 -43.50 16 9 Si 0.98 39.15 29.61 68.60 2.03 41.18 16 10 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 11 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 C 0.46 18.85 5.33 87.66 0.47 19.32 16 14 O -0.61 -31.19 14.26 -3.07 -0.04 -31.24 16 15 C -0.10 -2.91 1.82 -11.30 -0.02 -2.93 16 16 H 0.12 2.86 6.46 -2.39 -0.02 2.85 16 17 C -0.11 -3.62 4.54 29.70 0.13 -3.48 16 18 C 0.54 19.52 5.54 87.68 0.49 20.01 16 19 O -0.62 -27.87 17.79 -3.04 -0.05 -27.92 16 20 N -0.69 -20.47 4.48 -448.09 -2.01 -22.48 16 21 C 0.14 3.37 2.31 44.94 0.10 3.47 16 22 H 0.04 1.36 6.95 -2.39 -0.02 1.34 16 23 C -0.12 -1.87 5.53 30.37 0.17 -1.70 16 24 C -0.12 -1.55 5.84 30.56 0.18 -1.37 16 25 C -0.11 -1.26 5.92 30.59 0.18 -1.08 16 26 C -0.12 -1.73 4.55 30.60 0.14 -1.59 16 27 C -0.08 -1.58 2.21 -10.62 -0.02 -1.60 16 28 H 0.13 1.89 7.09 -2.38 -0.02 1.87 16 29 H 0.12 3.93 7.12 -2.39 -0.02 3.91 16 30 H 0.14 3.07 5.34 -2.39 -0.01 3.06 16 31 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 32 H 0.07 2.65 8.10 -2.39 -0.02 2.63 16 33 H 0.14 3.23 6.80 -2.39 -0.02 3.21 16 34 H 0.40 11.12 8.68 -92.71 -0.80 10.31 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 0.78 7.87 -2.39 -0.02 0.77 16 38 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 0.95 5.43 -2.39 -0.01 0.94 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -75.84 327.59 3.62 -72.21 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.26 Total: 22.15 kcal Atomic # 6 Polarization: 28.78 SS G_CDS: 4.52 Total: 33.30 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -3.10 Total: -109.69 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -0.10 Total: -59.16 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -75.84 3.62 -72.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.835 kcal (2) G-P(sol) polarization free energy of solvation -75.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds