Wall clock time and date at job start Fri Apr 10 2020 17:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47442 * 16.16992 * 3 2 1 5 5 C 1.37094 * 119.99801 * 264.75447 * 4 3 2 6 6 H 1.08011 * 120.00018 * 193.71839 * 5 4 3 7 7 C 1.38952 * 120.00294 * 13.71263 * 5 4 3 8 8 N 1.31409 * 119.99759 * 26.30410 * 7 5 4 9 9 Si 1.86802 * 120.00085 * 206.30003 * 7 5 4 10 10 H 1.48496 * 109.47255 * 94.99482 * 9 7 5 11 11 H 1.48504 * 109.47124 * 214.99432 * 9 7 5 12 12 H 1.48508 * 109.47229 * 334.99312 * 9 7 5 13 13 C 1.34777 * 120.00299 * 84.74689 * 4 3 2 14 14 O 1.21282 * 120.00259 * 183.96467 * 13 4 3 15 15 C 1.50699 * 119.99697 * 3.96540 * 13 4 3 16 16 H 1.09007 * 109.70980 * 333.69132 * 15 13 4 17 17 C 1.53178 * 109.74922 * 213.07457 * 15 13 4 18 18 C 1.50087 * 110.46482 * 287.17261 * 17 15 13 19 19 O 1.21278 * 118.04671 * 163.67582 * 18 17 15 20 20 N 1.33634 * 123.90429 * 343.65360 * 18 17 15 21 21 C 1.45128 * 123.24736 * 3.81308 * 20 18 17 22 22 H 1.08994 * 108.08426 * 96.22218 * 21 20 18 23 23 C 1.52710 * 111.83190 * 215.90951 * 21 20 18 24 24 C 1.53209 * 108.98415 * 183.17696 * 23 21 20 25 25 C 1.52884 * 109.95435 * 300.61447 * 24 23 21 26 26 C 1.53194 * 109.97026 * 58.91966 * 25 24 23 27 27 C 1.52759 * 108.87760 * 300.57713 * 26 25 24 28 28 H 1.09008 * 109.43541 * 301.38374 * 27 26 25 29 29 H 1.09006 * 109.46780 * 256.16740 * 3 2 1 30 30 H 1.09001 * 109.46917 * 136.17305 * 3 2 1 31 31 H 0.96998 * 119.99596 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.30507 * 47.47704 * 17 15 13 33 33 H 1.08997 * 109.30258 * 166.87004 * 17 15 13 34 34 H 0.96998 * 118.40633 * 183.80703 * 20 18 17 35 35 H 1.08992 * 109.57143 * 63.29804 * 23 21 20 36 36 H 1.09006 * 109.56441 * 303.05634 * 23 21 20 37 37 H 1.09006 * 109.38531 * 60.76507 * 24 23 21 38 38 H 1.08993 * 109.38716 * 180.46404 * 24 23 21 39 39 H 1.09011 * 109.38467 * 179.06779 * 25 24 23 40 40 H 1.08997 * 109.39016 * 298.86601 * 25 24 23 41 41 H 1.09002 * 109.57097 * 60.39893 * 26 25 24 42 42 H 1.09008 * 109.56789 * 180.75784 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3256 -0.3846 5 6 3.4283 -2.2406 0.5810 6 1 3.9905 -3.1244 0.3175 7 6 3.0409 -2.0311 1.8989 8 7 1.9783 -1.3047 2.1638 9 14 4.0305 -2.7820 3.2940 10 1 5.0116 -1.7871 3.7965 11 1 3.1147 -3.1740 4.3954 12 1 4.7517 -3.9822 2.7992 13 6 3.2211 -1.6464 -1.6878 14 8 3.5569 -2.7672 -2.0072 15 6 2.9425 -0.6123 -2.7480 16 1 2.2423 0.1293 -2.3634 17 6 2.3494 -1.2888 -3.9877 18 6 3.4062 -2.0645 -4.7185 19 8 3.0480 -2.8889 -5.5327 20 7 4.7184 -1.9006 -4.5258 21 6 5.2699 -1.0054 -3.5255 22 1 5.4970 -1.5917 -2.6351 23 6 6.5521 -0.3326 -4.0106 24 6 7.1195 0.5323 -2.8804 25 6 6.0965 1.5919 -2.4705 26 6 4.8009 0.9174 -2.0089 27 6 4.2475 0.0732 -3.1555 28 1 4.0673 0.7107 -4.0212 29 1 2.9712 0.2465 0.9979 30 1 2.9710 0.7422 -0.7117 31 1 1.7077 -1.1587 3.0838 32 1 1.5521 -1.9662 -3.6818 33 1 1.9373 -0.5282 -4.6508 34 1 5.3329 -2.4047 -5.0817 35 1 6.3312 0.2944 -4.8743 36 1 7.2810 -1.0939 -4.2889 37 1 7.3501 -0.0992 -2.0224 38 1 8.0309 1.0224 -3.2226 39 1 6.5029 2.1910 -1.6554 40 1 5.8830 2.2375 -3.3224 41 1 5.0079 0.2775 -1.1512 42 1 4.0718 1.6787 -1.7311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597032459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:16 Heat of formation + Delta-G solvation = -44.855563 kcal Electronic energy + Delta-G solvation = -27050.689164 eV Core-core repulsion = 23416.510158 eV Total energy + Delta-G solvation = -3634.179006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03151 -38.57050 -37.77917 -35.92485 -34.58485 -34.06289 -33.52783 -31.78457 -29.86652 -29.00447 -27.59443 -25.75481 -23.84206 -22.60532 -22.39889 -20.34122 -19.97836 -18.30897 -17.87630 -16.78988 -16.43691 -16.40328 -15.94950 -15.06138 -14.84681 -14.66082 -14.39522 -14.00635 -13.98330 -13.81635 -13.13620 -12.98508 -12.91976 -12.84486 -12.45930 -12.09798 -11.79694 -11.75895 -11.67605 -11.59910 -11.33328 -11.25537 -11.21657 -11.08563 -10.68391 -10.54691 -10.44908 -10.44594 -10.23730 -10.03780 -9.35810 -9.27784 -8.65361 -8.55274 -8.12764 -6.59798 -4.02703 3.02451 3.11931 3.18332 3.22464 3.43127 3.61490 3.71602 3.88925 4.04536 4.47394 4.52148 4.69651 4.73147 4.82404 4.96070 5.04357 5.09578 5.18003 5.28596 5.35064 5.40386 5.44877 5.51554 5.53352 5.73434 5.78847 5.87645 5.91365 5.99526 6.06356 6.10743 6.14771 6.19000 6.20885 6.23971 6.39831 6.50302 7.17879 7.41240 7.74802 7.80665 8.20823 8.64089 8.65257 8.93382 9.12796 9.66638 10.46357 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.006145 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.149867 B = 4555.788322 C = 4991.099770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.240 3.760 3 C 0.210 3.790 4 N -0.437 5.437 5 C -0.317 4.317 6 H 0.110 0.890 7 C 0.035 3.965 8 N -0.869 5.869 9 Si 0.921 3.079 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.456 3.544 14 O -0.561 6.561 15 C -0.111 4.111 16 H 0.092 0.908 17 C -0.114 4.114 18 C 0.544 3.456 19 O -0.573 6.573 20 N -0.703 5.703 21 C 0.140 3.860 22 H 0.084 0.916 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.083 4.083 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.274 0.726 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.393 0.607 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.290 10.409 -6.686 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.079 4.079 3 C 0.083 3.917 4 N -0.156 5.156 5 C -0.444 4.444 6 H 0.128 0.872 7 C -0.170 4.170 8 N -0.507 5.507 9 Si 0.748 3.252 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.245 3.755 14 O -0.443 6.443 15 C -0.133 4.133 16 H 0.110 0.890 17 C -0.154 4.154 18 C 0.332 3.668 19 O -0.453 6.453 20 N -0.353 5.353 21 C 0.035 3.965 22 H 0.102 0.898 23 C -0.163 4.163 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.163 4.163 27 C -0.102 4.102 28 H 0.100 0.900 29 H 0.145 0.855 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.333 9.575 -6.926 14.460 hybrid contribution 0.839 -0.521 0.930 1.356 sum 9.172 9.054 -5.997 14.215 Atomic orbital electron populations 1.80916 1.13591 1.08911 1.11296 1.29403 0.95455 0.92169 0.90863 1.19062 0.81599 0.86941 1.04138 1.43672 1.56165 1.11236 1.04565 1.19734 1.33241 1.05489 0.85895 0.87203 1.25227 0.95100 0.97703 0.98968 1.69964 1.19597 1.39962 1.21199 0.85978 0.79581 0.79530 0.80148 1.20132 1.21139 1.19263 1.19811 0.84288 0.88595 0.82846 1.90598 1.51232 1.21871 1.80628 1.21468 0.97984 0.98244 0.95563 0.88988 1.21403 0.97765 1.00362 0.95845 1.19806 0.83348 0.82316 0.81309 1.90687 1.80804 1.36135 1.37692 1.45136 1.06781 1.44866 1.38502 1.20853 0.92791 0.90662 0.92203 0.89837 1.21819 0.96381 0.99263 0.98878 1.21488 0.98067 0.97486 0.98409 1.21536 0.95256 0.97646 1.01010 1.21827 0.97038 0.99155 0.98264 1.21321 0.93517 0.95987 0.99378 0.89974 0.85473 0.89188 0.91598 0.88055 0.88348 0.77158 0.91542 0.91504 0.91307 0.91769 0.91515 0.92074 0.89805 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.71 18.54 42.15 0.78 -9.93 16 2 C 0.24 5.03 13.09 -20.76 -0.27 4.75 16 3 C 0.21 3.81 4.15 -6.83 -0.03 3.79 16 4 N -0.44 -9.30 2.26 -117.93 -0.27 -9.57 16 5 C -0.32 -7.69 9.33 -14.93 -0.14 -7.83 16 6 H 0.11 2.87 7.40 -52.48 -0.39 2.49 16 7 C 0.03 0.81 4.77 -17.47 -0.08 0.73 16 8 N -0.87 -21.01 9.65 55.50 0.54 -20.48 16 9 Si 0.92 18.81 29.63 -169.99 -5.04 13.77 16 10 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 11 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.46 9.41 4.95 -10.99 -0.05 9.35 16 14 O -0.56 -13.72 13.65 5.56 0.08 -13.65 16 15 C -0.11 -1.74 2.14 -91.71 -0.20 -1.94 16 16 H 0.09 1.33 5.84 -51.92 -0.30 1.03 16 17 C -0.11 -1.87 5.25 -28.09 -0.15 -2.02 16 18 C 0.54 9.95 6.51 -11.79 -0.08 9.88 16 19 O -0.57 -12.51 17.78 5.56 0.10 -12.41 16 20 N -0.70 -10.79 5.02 -55.24 -0.28 -11.06 16 21 C 0.14 1.87 2.08 -68.73 -0.14 1.73 16 22 H 0.08 1.38 6.60 -51.93 -0.34 1.04 16 23 C -0.13 -1.23 5.59 -26.77 -0.15 -1.38 16 24 C -0.12 -1.03 5.91 -26.68 -0.16 -1.19 16 25 C -0.12 -1.00 5.90 -26.69 -0.16 -1.16 16 26 C -0.13 -1.34 3.77 -26.75 -0.10 -1.44 16 27 C -0.08 -1.02 1.71 -90.70 -0.15 -1.17 16 28 H 0.08 0.87 8.11 -51.92 -0.42 0.45 16 29 H 0.13 2.38 6.36 -51.93 -0.33 2.05 16 30 H 0.09 1.24 3.47 -51.93 -0.18 1.06 16 31 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.10 1.89 8.08 -51.93 -0.42 1.47 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.39 5.52 8.71 -40.82 -0.36 5.17 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.08 6.72 -51.93 -0.35 0.73 16 42 H 0.07 0.68 6.79 -51.92 -0.35 0.33 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -31.97 326.40 -6.57 -38.54 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.54 Total: 7.76 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -1.86 Total: 12.11 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.77 Total: -51.04 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: 0.17 Total: -26.06 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.04 Total: 13.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.97 -6.57 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.316 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds