Wall clock time and date at job start Fri Apr 10 2020 17:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47442 * 16.16992 * 3 2 1 5 5 C 1.37094 * 119.99801 * 264.75447 * 4 3 2 6 6 H 1.08011 * 120.00018 * 193.71839 * 5 4 3 7 7 C 1.38952 * 120.00294 * 13.71263 * 5 4 3 8 8 N 1.31409 * 119.99759 * 26.30410 * 7 5 4 9 9 Si 1.86802 * 120.00085 * 206.30003 * 7 5 4 10 10 H 1.48496 * 109.47255 * 94.99482 * 9 7 5 11 11 H 1.48504 * 109.47124 * 214.99432 * 9 7 5 12 12 H 1.48508 * 109.47229 * 334.99312 * 9 7 5 13 13 C 1.34777 * 120.00299 * 84.74689 * 4 3 2 14 14 O 1.21282 * 120.00259 * 183.96467 * 13 4 3 15 15 C 1.50699 * 119.99697 * 3.96540 * 13 4 3 16 16 H 1.09007 * 109.70980 * 333.69132 * 15 13 4 17 17 C 1.53178 * 109.74922 * 213.07457 * 15 13 4 18 18 C 1.50087 * 110.46482 * 287.17261 * 17 15 13 19 19 O 1.21278 * 118.04671 * 163.67582 * 18 17 15 20 20 N 1.33634 * 123.90429 * 343.65360 * 18 17 15 21 21 C 1.45128 * 123.24736 * 3.81308 * 20 18 17 22 22 H 1.08994 * 108.08426 * 96.22218 * 21 20 18 23 23 C 1.52710 * 111.83190 * 215.90951 * 21 20 18 24 24 C 1.53209 * 108.98415 * 183.17696 * 23 21 20 25 25 C 1.52884 * 109.95435 * 300.61447 * 24 23 21 26 26 C 1.53194 * 109.97026 * 58.91966 * 25 24 23 27 27 C 1.52759 * 108.87760 * 300.57713 * 26 25 24 28 28 H 1.09008 * 109.43541 * 301.38374 * 27 26 25 29 29 H 1.09006 * 109.46780 * 256.16740 * 3 2 1 30 30 H 1.09001 * 109.46917 * 136.17305 * 3 2 1 31 31 H 0.96998 * 119.99596 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.30507 * 47.47704 * 17 15 13 33 33 H 1.08997 * 109.30258 * 166.87004 * 17 15 13 34 34 H 0.96998 * 118.40633 * 183.80703 * 20 18 17 35 35 H 1.08992 * 109.57143 * 63.29804 * 23 21 20 36 36 H 1.09006 * 109.56441 * 303.05634 * 23 21 20 37 37 H 1.09006 * 109.38531 * 60.76507 * 24 23 21 38 38 H 1.08993 * 109.38716 * 180.46404 * 24 23 21 39 39 H 1.09011 * 109.38467 * 179.06779 * 25 24 23 40 40 H 1.08997 * 109.39016 * 298.86601 * 25 24 23 41 41 H 1.09002 * 109.57097 * 60.39893 * 26 25 24 42 42 H 1.09008 * 109.56789 * 180.75784 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3256 -0.3846 5 6 3.4283 -2.2406 0.5810 6 1 3.9905 -3.1244 0.3175 7 6 3.0409 -2.0311 1.8989 8 7 1.9783 -1.3047 2.1638 9 14 4.0305 -2.7820 3.2940 10 1 5.0116 -1.7871 3.7965 11 1 3.1147 -3.1740 4.3954 12 1 4.7517 -3.9822 2.7992 13 6 3.2211 -1.6464 -1.6878 14 8 3.5569 -2.7672 -2.0072 15 6 2.9425 -0.6123 -2.7480 16 1 2.2423 0.1293 -2.3634 17 6 2.3494 -1.2888 -3.9877 18 6 3.4062 -2.0645 -4.7185 19 8 3.0480 -2.8889 -5.5327 20 7 4.7184 -1.9006 -4.5258 21 6 5.2699 -1.0054 -3.5255 22 1 5.4970 -1.5917 -2.6351 23 6 6.5521 -0.3326 -4.0106 24 6 7.1195 0.5323 -2.8804 25 6 6.0965 1.5919 -2.4705 26 6 4.8009 0.9174 -2.0089 27 6 4.2475 0.0732 -3.1555 28 1 4.0673 0.7107 -4.0212 29 1 2.9712 0.2465 0.9979 30 1 2.9710 0.7422 -0.7117 31 1 1.7077 -1.1587 3.0838 32 1 1.5521 -1.9662 -3.6818 33 1 1.9373 -0.5282 -4.6508 34 1 5.3329 -2.4047 -5.0817 35 1 6.3312 0.2944 -4.8743 36 1 7.2810 -1.0939 -4.2889 37 1 7.3501 -0.0992 -2.0224 38 1 8.0309 1.0224 -3.2226 39 1 6.5029 2.1910 -1.6554 40 1 5.8830 2.2375 -3.3224 41 1 5.0079 0.2775 -1.1512 42 1 4.0718 1.6787 -1.7311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597032459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:15 Heat of formation + Delta-G solvation = -66.612062 kcal Electronic energy + Delta-G solvation = -27051.632597 eV Core-core repulsion = 23416.510158 eV Total energy + Delta-G solvation = -3635.122439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32604 -40.13879 -38.95908 -37.62225 -36.24612 -35.31962 -34.82922 -33.52878 -30.83122 -30.04083 -29.22192 -27.35844 -25.25319 -23.61675 -23.42443 -21.73321 -20.88801 -19.87669 -19.50043 -18.09494 -17.93841 -17.86683 -17.28687 -16.61504 -16.20317 -16.04710 -15.80230 -15.27521 -15.06481 -14.85729 -14.70493 -14.38706 -14.35952 -13.97578 -13.72885 -13.65193 -13.31479 -13.24598 -12.94500 -12.81176 -12.77670 -12.59363 -12.40461 -12.29946 -12.14462 -12.07301 -11.95313 -11.32350 -11.22164 -11.08557 -11.05890 -10.63693 -10.28047 -9.94853 -9.86636 -8.42198 -5.90555 1.37810 1.48637 1.58003 1.68508 1.80373 2.04738 2.23289 2.35296 2.43830 2.95408 3.06355 3.44213 3.52811 3.65218 3.70739 3.74382 4.00375 4.21659 4.26871 4.32197 4.44465 4.48615 4.55036 4.60052 4.62203 4.70473 4.73762 4.82113 4.89155 5.05035 5.07237 5.30217 5.33347 5.36389 5.43170 5.48054 5.51163 5.70172 5.94311 6.03311 6.41299 6.44382 6.97667 7.14952 7.28723 7.38097 7.96243 8.61955 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.006145 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.149867 B = 4555.788322 C = 4991.099770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.250 3.750 3 C 0.214 3.786 4 N -0.446 5.446 5 C -0.340 4.340 6 H 0.078 0.922 7 C 0.011 3.989 8 N -0.886 5.886 9 Si 0.977 3.023 10 H -0.255 1.255 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.455 3.545 14 O -0.608 6.608 15 C -0.103 4.103 16 H 0.113 0.887 17 C -0.115 4.115 18 C 0.535 3.465 19 O -0.620 6.620 20 N -0.694 5.694 21 C 0.138 3.862 22 H 0.044 0.956 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.128 4.128 27 C -0.078 4.078 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.275 0.725 32 H 0.071 0.929 33 H 0.141 0.859 34 H 0.397 0.603 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.675 13.657 -7.123 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.067 4.067 3 C 0.088 3.912 4 N -0.165 5.165 5 C -0.467 4.467 6 H 0.096 0.904 7 C -0.192 4.192 8 N -0.524 5.524 9 Si 0.802 3.198 10 H -0.179 1.179 11 H -0.217 1.217 12 H -0.206 1.206 13 C 0.245 3.755 14 O -0.493 6.493 15 C -0.125 4.125 16 H 0.131 0.869 17 C -0.155 4.155 18 C 0.324 3.676 19 O -0.504 6.504 20 N -0.342 5.342 21 C 0.033 3.967 22 H 0.062 0.938 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.148 4.148 26 C -0.166 4.166 27 C -0.097 4.097 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.158 0.842 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.158 0.842 34 H 0.233 0.767 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.749 12.872 -7.337 17.736 hybrid contribution 0.435 -1.629 1.062 1.993 sum 10.184 11.243 -6.275 16.416 Atomic orbital electron populations 1.80920 1.14810 1.10067 1.12637 1.29943 0.95989 0.91068 0.89731 1.19376 0.79875 0.86408 1.05578 1.43764 1.56308 1.11991 1.04486 1.19522 1.34072 1.05796 0.87305 0.90382 1.25747 0.95405 0.98004 1.00083 1.70027 1.20078 1.40770 1.21530 0.85166 0.78444 0.78775 0.77425 1.17938 1.21652 1.20635 1.20711 0.82269 0.89017 0.83476 1.90570 1.52859 1.24380 1.81494 1.21488 1.00530 0.97070 0.93367 0.86942 1.21461 0.96511 1.00754 0.96753 1.20206 0.84491 0.82027 0.80896 1.90656 1.81701 1.38172 1.39842 1.45181 1.06101 1.44741 1.38207 1.20993 0.94993 0.90365 0.90353 0.93774 1.21789 0.94249 0.99515 0.99883 1.21518 0.99242 0.97357 0.97327 1.21522 0.93567 0.97430 1.02309 1.21884 0.99074 0.99071 0.96568 1.21443 0.91004 0.95838 1.01391 0.86412 0.85702 0.84200 0.91515 0.91019 0.84160 0.76729 0.89451 0.91276 0.93152 0.89515 0.90257 0.89821 0.92461 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.79 18.54 20.01 0.37 -22.42 16 2 C 0.25 10.25 13.09 89.44 1.17 11.42 16 3 C 0.21 7.47 4.15 84.58 0.35 7.82 16 4 N -0.45 -19.15 2.26 -645.41 -1.46 -20.61 16 5 C -0.34 -16.96 9.33 84.04 0.78 -16.18 16 6 H 0.08 4.33 7.40 -2.90 -0.02 4.31 16 7 C 0.01 0.50 4.77 84.93 0.41 0.91 16 8 N -0.89 -42.68 9.65 21.66 0.21 -42.47 16 9 Si 0.98 38.84 29.63 68.60 2.03 40.87 16 10 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 11 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.46 19.00 4.95 87.66 0.43 19.44 16 14 O -0.61 -31.13 13.65 -3.04 -0.04 -31.17 16 15 C -0.10 -3.06 2.14 -11.50 -0.02 -3.08 16 16 H 0.11 2.89 5.84 -2.38 -0.01 2.88 16 17 C -0.11 -3.68 5.25 29.72 0.16 -3.52 16 18 C 0.53 19.61 6.51 87.64 0.57 20.18 16 19 O -0.62 -27.75 17.78 -3.02 -0.05 -27.80 16 20 N -0.69 -21.05 5.02 -447.70 -2.25 -23.30 16 21 C 0.14 3.49 2.08 45.20 0.09 3.59 16 22 H 0.04 1.50 6.60 -2.39 -0.02 1.48 16 23 C -0.12 -1.95 5.59 30.57 0.17 -1.78 16 24 C -0.12 -1.68 5.91 30.63 0.18 -1.50 16 25 C -0.11 -1.38 5.90 30.62 0.18 -1.20 16 26 C -0.13 -2.27 3.77 30.58 0.12 -2.15 16 27 C -0.08 -1.67 1.71 -10.84 -0.02 -1.69 16 28 H 0.12 1.84 8.11 -2.38 -0.02 1.82 16 29 H 0.13 4.51 6.36 -2.38 -0.02 4.50 16 30 H 0.14 3.39 3.47 -2.39 -0.01 3.38 16 31 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 32 H 0.07 2.73 8.08 -2.39 -0.02 2.72 16 33 H 0.14 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.40 11.17 8.71 -92.71 -0.81 10.36 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 1.36 6.72 -2.39 -0.02 1.34 16 42 H 0.10 1.28 6.79 -2.38 -0.02 1.26 16 Total: -1.00 -73.96 326.40 3.64 -70.32 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.26 Total: 24.33 kcal Atomic # 6 Polarization: 27.68 SS G_CDS: 4.57 Total: 32.25 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -3.13 Total: -108.81 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -0.10 Total: -58.97 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -73.96 3.64 -70.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.707 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds