Wall clock time and date at job start Fri Apr 10 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48491 * 109.47536 * 274.99059 * 3 2 1 5 5 H 1.48502 * 109.47012 * 34.99091 * 3 2 1 6 6 H 1.48506 * 109.47498 * 154.98789 * 3 2 1 7 7 C 1.37881 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00486 * 186.08875 * 7 2 1 9 9 C 1.50702 * 119.99757 * 6.08914 * 7 2 1 10 10 O 1.42900 * 110.64237 * 294.98264 * 9 7 2 11 11 C 1.55164 * 110.71776 * 58.12554 * 9 7 2 12 12 C 1.54913 * 101.58031 * 154.04369 * 11 9 7 13 13 N 1.47423 * 104.83041 * 322.98668 * 12 11 9 14 14 C 1.34774 * 125.64745 * 204.09354 * 13 12 11 15 15 O 1.21291 * 120.00154 * 180.02562 * 14 13 12 16 16 C 1.50695 * 120.00354 * 0.02562 * 14 13 12 17 17 N 1.46493 * 109.47711 * 179.97438 * 16 14 13 18 18 C 1.34953 * 126.03884 * 124.99668 * 17 16 14 19 19 C 1.35313 * 107.74727 * 179.97438 * 18 17 16 20 20 C 1.50707 * 126.03888 * 180.02562 * 19 18 17 21 21 C 1.52993 * 117.49706 * 188.74935 * 20 19 18 22 22 C 1.52997 * 117.50210 * 120.08633 * 20 19 18 23 23 C 1.39873 * 107.92286 * 359.97438 * 19 18 17 24 24 N 1.30843 * 108.19657 * 359.74667 * 23 19 18 25 25 C 1.47017 * 108.70535 * 24.35995 * 13 12 11 26 26 H 0.96997 * 120.00084 * 359.97438 * 1 2 3 27 27 H 0.96694 * 113.99628 * 61.69095 * 10 9 7 28 28 H 1.09000 * 111.00415 * 35.96672 * 11 9 7 29 29 H 1.09003 * 110.99728 * 272.11436 * 11 9 7 30 30 H 1.08999 * 110.36445 * 204.14929 * 12 11 9 31 31 H 1.08993 * 110.46062 * 81.87342 * 12 11 9 32 32 H 1.09000 * 109.47072 * 59.99871 * 16 14 13 33 33 H 1.09005 * 109.47295 * 300.00232 * 16 14 13 34 34 H 1.08005 * 126.12532 * 0.02562 * 18 17 16 35 35 H 1.09002 * 115.54312 * 334.40923 * 20 19 18 36 36 H 1.09001 * 117.50046 * 359.97438 * 21 20 19 37 37 H 1.09000 * 117.50292 * 145.02248 * 21 20 19 38 38 H 1.08997 * 117.49722 * 214.97746 * 22 20 19 39 39 H 1.08997 * 117.49564 * 359.97393 * 22 20 19 40 40 H 1.08000 * 125.90013 * 179.97438 * 23 19 18 41 41 H 1.08997 * 109.88801 * 118.12688 * 25 13 12 42 42 H 1.09005 * 109.88578 * 239.29755 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1073 -1.3946 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5920 7 6 2.0046 -1.1941 0.0005 8 1 3.0800 -1.1967 0.0997 9 6 1.2575 -2.4955 -0.1373 10 8 0.4086 -2.7112 0.9918 11 6 0.4367 -2.5205 -1.4539 12 6 0.3413 -4.0415 -1.7320 13 7 1.6452 -4.5848 -1.3100 14 6 2.2026 -5.7268 -1.7587 15 8 3.2849 -6.0790 -1.3394 16 6 1.4814 -6.5663 -2.7814 17 7 2.2892 -7.7453 -3.1032 18 6 1.8854 -9.0305 -3.0229 19 6 2.9212 -9.8129 -3.4047 20 6 2.9184 -11.3186 -3.4693 21 6 4.2544 -12.0170 -3.7302 22 6 3.1887 -11.9680 -4.8279 23 6 3.9948 -8.9773 -3.7300 24 7 3.6151 -7.7375 -3.5551 25 6 2.2337 -3.6778 -0.3138 26 1 -0.4850 0.8400 0.0004 27 1 -0.2754 -2.0370 1.1040 28 1 0.9691 -2.0093 -2.2559 29 1 -0.5526 -2.0876 -1.3057 30 1 0.1805 -4.2234 -2.7947 31 1 -0.4627 -4.4863 -1.1459 32 1 1.3204 -5.9790 -3.6854 33 1 0.5196 -6.8835 -2.3782 34 1 0.9098 -9.3731 -2.7107 35 1 2.2116 -11.8161 -2.8052 36 1 5.1353 -11.3875 -3.8556 37 1 4.4264 -12.9743 -3.2383 38 1 2.6600 -12.8931 -5.0576 39 1 3.3681 -11.3062 -5.6752 40 1 4.9677 -9.2997 -4.0705 41 1 2.3610 -4.2006 0.6341 42 1 3.1966 -3.3110 -0.6695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597800952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:27 Heat of formation + Delta-G solvation = 28.954833 kcal Electronic energy + Delta-G solvation = -24571.037539 eV Core-core repulsion = 20940.059192 eV Total energy + Delta-G solvation = -3630.978347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31321 -39.49922 -37.46824 -37.01232 -34.40604 -33.08568 -32.29447 -30.22767 -29.85932 -28.62989 -27.28984 -24.96562 -22.98766 -22.65453 -22.44786 -21.20594 -20.12586 -19.65558 -18.73468 -17.39969 -17.02747 -16.75269 -15.78450 -15.65539 -15.16801 -14.99832 -14.48174 -14.36402 -14.13541 -14.00126 -13.67403 -13.06013 -12.84414 -12.68778 -12.24022 -12.14750 -11.97099 -11.69350 -11.60485 -11.52160 -11.40355 -10.98288 -10.94785 -10.71974 -10.60004 -10.51956 -10.35330 -10.18343 -9.81938 -9.47834 -9.20148 -8.70625 -8.31229 -8.22438 -8.14002 -6.35409 -4.41815 1.86666 2.38953 2.73418 2.85336 3.16483 3.24686 3.28640 3.39213 3.87345 4.22705 4.35985 4.63238 4.73802 4.76419 4.80061 4.92206 4.93214 4.99406 5.13210 5.26064 5.40138 5.47450 5.61324 5.63408 5.71989 5.78478 5.88752 5.94931 5.97507 6.09108 6.13707 6.35953 6.58733 6.64031 6.79294 6.83658 6.96221 7.20627 7.27240 7.67307 7.75564 7.93450 7.96221 8.45608 8.61421 9.22958 9.34422 10.72545 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.040198 B = 0.002620 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.376632 B =10686.235212 C =10929.326758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.090 3.910 13 N -0.607 5.607 14 C 0.508 3.492 15 O -0.524 6.524 16 C 0.121 3.879 17 N -0.357 5.357 18 C 0.059 3.941 19 C -0.209 4.209 20 C -0.070 4.070 21 C -0.177 4.177 22 C -0.178 4.178 23 C 0.043 3.957 24 N -0.260 5.260 25 C 0.125 3.875 26 H 0.268 0.732 27 H 0.383 0.617 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.172 0.828 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.178 0.822 41 H 0.061 0.939 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -17.267 -8.865 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.032 4.032 13 N -0.341 5.341 14 C 0.294 3.706 15 O -0.400 6.400 16 C -0.005 4.005 17 N -0.139 5.139 18 C -0.086 4.086 19 C -0.221 4.221 20 C -0.089 4.089 21 C -0.214 4.214 22 C -0.215 4.215 23 C -0.145 4.145 24 N -0.079 5.079 25 C 0.004 3.996 26 H 0.078 0.922 27 H 0.233 0.767 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.190 0.810 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.194 0.806 41 H 0.080 0.920 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.640 -16.546 -8.613 18.665 hybrid contribution -0.349 0.660 -0.033 0.747 sum -0.989 -15.886 -8.646 18.114 Atomic orbital electron populations 1.69693 1.05980 1.27712 1.50019 1.24979 0.95017 0.99555 0.93421 0.86397 0.80032 0.82417 0.78149 1.20473 1.21005 1.19629 1.21497 0.94212 0.90193 1.51454 0.91709 1.19495 0.86502 0.90371 0.82935 1.86140 1.49195 1.54457 1.49757 1.23294 1.03080 0.90297 1.00652 1.22590 0.84667 0.97762 0.98208 1.48620 1.21232 1.21786 1.42511 1.19969 0.86386 0.81108 0.83176 1.90760 1.20593 1.70351 1.58325 1.21491 0.93153 0.85770 1.00060 1.47979 1.10260 1.04547 1.51075 1.22170 1.00245 0.83752 1.02465 1.19213 0.94378 0.94104 1.14409 1.20139 0.99977 0.89460 0.99330 1.22965 0.93185 1.02076 1.03190 1.23022 1.03359 1.02362 0.92769 1.23707 0.99634 0.89993 1.01117 1.77539 0.91598 1.20893 1.17917 1.22086 0.97311 0.89983 0.90261 0.92184 0.76712 0.91308 0.89201 0.92095 0.91622 0.86973 0.85983 0.81047 0.87488 0.88689 0.88778 0.88935 0.88833 0.80550 0.92047 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.33 10.71 55.43 0.59 -21.74 16 2 C 0.07 1.84 5.24 -17.82 -0.09 1.75 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.76 8.22 -34.44 -0.28 -14.04 16 8 H 0.06 1.69 7.63 -52.49 -0.40 1.29 16 9 C 0.25 5.77 0.85 -89.92 -0.08 5.69 16 10 O -0.59 -14.22 13.06 -35.23 -0.46 -14.68 16 11 C -0.13 -2.74 5.43 -24.58 -0.13 -2.87 16 12 C 0.09 1.48 6.68 -2.53 -0.02 1.46 16 13 N -0.61 -11.43 3.33 -170.52 -0.57 -12.00 16 14 C 0.51 9.30 7.88 -10.99 -0.09 9.21 16 15 O -0.52 -11.83 16.05 5.55 0.09 -11.74 16 16 C 0.12 1.58 6.00 -5.20 -0.03 1.55 16 17 N -0.36 -5.20 3.39 -62.55 -0.21 -5.41 16 18 C 0.06 0.70 11.36 -17.22 -0.20 0.50 16 19 C -0.21 -2.50 5.76 -105.05 -0.61 -3.10 16 20 C -0.07 -0.64 6.25 -91.77 -0.57 -1.21 16 21 C -0.18 -1.42 10.03 -26.70 -0.27 -1.69 16 22 C -0.18 -1.39 10.24 -26.69 -0.27 -1.66 16 23 C 0.04 0.58 11.35 -17.36 -0.20 0.38 16 24 N -0.26 -4.36 11.66 30.63 0.36 -4.00 16 25 C 0.13 2.77 6.23 -3.06 -0.02 2.75 16 26 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 27 H 0.38 9.24 7.52 45.56 0.34 9.58 16 28 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 29 H 0.09 1.89 7.53 -51.93 -0.39 1.50 16 30 H 0.06 0.79 7.48 -51.93 -0.39 0.40 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.11 1.26 7.85 -51.93 -0.41 0.85 16 33 H 0.12 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.76 6.98 -51.93 -0.36 0.40 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.18 1.92 7.20 -52.49 -0.38 1.55 16 41 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 42 H 0.07 1.69 7.69 -51.93 -0.40 1.29 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -31.35 351.70 -8.08 -39.44 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.31 Total: 11.14 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.85 Total: -1.27 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.17 Total: -43.15 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.37 Total: -26.42 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.35 -8.08 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597800952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.390 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds