Wall clock time and date at job start Fri Apr 10 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48491 * 109.47536 * 274.99059 * 3 2 1 5 5 H 1.48502 * 109.47012 * 34.99091 * 3 2 1 6 6 H 1.48506 * 109.47498 * 154.98789 * 3 2 1 7 7 C 1.37881 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00486 * 186.08875 * 7 2 1 9 9 C 1.50702 * 119.99757 * 6.08914 * 7 2 1 10 10 O 1.42900 * 110.64237 * 294.98264 * 9 7 2 11 11 C 1.55164 * 110.71776 * 58.12554 * 9 7 2 12 12 C 1.54913 * 101.58031 * 154.04369 * 11 9 7 13 13 N 1.47423 * 104.83041 * 322.98668 * 12 11 9 14 14 C 1.34774 * 125.64745 * 204.09354 * 13 12 11 15 15 O 1.21291 * 120.00154 * 180.02562 * 14 13 12 16 16 C 1.50695 * 120.00354 * 0.02562 * 14 13 12 17 17 N 1.46493 * 109.47711 * 179.97438 * 16 14 13 18 18 C 1.34953 * 126.03884 * 124.99668 * 17 16 14 19 19 C 1.35313 * 107.74727 * 179.97438 * 18 17 16 20 20 C 1.50707 * 126.03888 * 180.02562 * 19 18 17 21 21 C 1.52993 * 117.49706 * 188.74935 * 20 19 18 22 22 C 1.52997 * 117.50210 * 120.08633 * 20 19 18 23 23 C 1.39873 * 107.92286 * 359.97438 * 19 18 17 24 24 N 1.30843 * 108.19657 * 359.74667 * 23 19 18 25 25 C 1.47017 * 108.70535 * 24.35995 * 13 12 11 26 26 H 0.96997 * 120.00084 * 359.97438 * 1 2 3 27 27 H 0.96694 * 113.99628 * 61.69095 * 10 9 7 28 28 H 1.09000 * 111.00415 * 35.96672 * 11 9 7 29 29 H 1.09003 * 110.99728 * 272.11436 * 11 9 7 30 30 H 1.08999 * 110.36445 * 204.14929 * 12 11 9 31 31 H 1.08993 * 110.46062 * 81.87342 * 12 11 9 32 32 H 1.09000 * 109.47072 * 59.99871 * 16 14 13 33 33 H 1.09005 * 109.47295 * 300.00232 * 16 14 13 34 34 H 1.08005 * 126.12532 * 0.02562 * 18 17 16 35 35 H 1.09002 * 115.54312 * 334.40923 * 20 19 18 36 36 H 1.09001 * 117.50046 * 359.97438 * 21 20 19 37 37 H 1.09000 * 117.50292 * 145.02248 * 21 20 19 38 38 H 1.08997 * 117.49722 * 214.97746 * 22 20 19 39 39 H 1.08997 * 117.49564 * 359.97393 * 22 20 19 40 40 H 1.08000 * 125.90013 * 179.97438 * 23 19 18 41 41 H 1.08997 * 109.88801 * 118.12688 * 25 13 12 42 42 H 1.09005 * 109.88578 * 239.29755 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1073 -1.3946 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5920 7 6 2.0046 -1.1941 0.0005 8 1 3.0800 -1.1967 0.0997 9 6 1.2575 -2.4955 -0.1373 10 8 0.4086 -2.7112 0.9918 11 6 0.4367 -2.5205 -1.4539 12 6 0.3413 -4.0415 -1.7320 13 7 1.6452 -4.5848 -1.3100 14 6 2.2026 -5.7268 -1.7587 15 8 3.2849 -6.0790 -1.3394 16 6 1.4814 -6.5663 -2.7814 17 7 2.2892 -7.7453 -3.1032 18 6 1.8854 -9.0305 -3.0229 19 6 2.9212 -9.8129 -3.4047 20 6 2.9184 -11.3186 -3.4693 21 6 4.2544 -12.0170 -3.7302 22 6 3.1887 -11.9680 -4.8279 23 6 3.9948 -8.9773 -3.7300 24 7 3.6151 -7.7375 -3.5551 25 6 2.2337 -3.6778 -0.3138 26 1 -0.4850 0.8400 0.0004 27 1 -0.2754 -2.0370 1.1040 28 1 0.9691 -2.0093 -2.2559 29 1 -0.5526 -2.0876 -1.3057 30 1 0.1805 -4.2234 -2.7947 31 1 -0.4627 -4.4863 -1.1459 32 1 1.3204 -5.9790 -3.6854 33 1 0.5196 -6.8835 -2.3782 34 1 0.9098 -9.3731 -2.7107 35 1 2.2116 -11.8161 -2.8052 36 1 5.1353 -11.3875 -3.8556 37 1 4.4264 -12.9743 -3.2383 38 1 2.6600 -12.8931 -5.0576 39 1 3.3681 -11.3062 -5.6752 40 1 4.9677 -9.2997 -4.0705 41 1 2.3610 -4.2006 0.6341 42 1 3.1966 -3.3110 -0.6695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597800952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:26 Heat of formation + Delta-G solvation = 7.540093 kcal Electronic energy + Delta-G solvation = -24571.966152 eV Core-core repulsion = 20940.059192 eV Total energy + Delta-G solvation = -3631.906960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28599 -40.98346 -39.02526 -37.79195 -36.13026 -34.24764 -34.15189 -31.61013 -31.02917 -30.18556 -28.58058 -26.68475 -24.08089 -23.78130 -23.14370 -22.31326 -21.51369 -20.92172 -20.01701 -19.18803 -18.31100 -17.88876 -17.13236 -16.92366 -16.64810 -16.28887 -16.03217 -15.61626 -15.37606 -14.99104 -14.83121 -14.75156 -14.08462 -13.87094 -13.70126 -13.40478 -13.27082 -13.25396 -13.18402 -12.84068 -12.67259 -12.45259 -12.29944 -12.26307 -11.99485 -11.75029 -11.38319 -11.32287 -11.16398 -11.08459 -10.63176 -10.34272 -10.17038 -9.69271 -9.11491 -8.28227 -6.41134 0.90556 1.38576 1.42264 1.44462 1.47705 1.51434 1.81709 2.02660 2.37725 2.97809 3.22048 3.31454 3.61400 3.82591 3.94437 3.95948 4.02006 4.10025 4.14500 4.23817 4.28401 4.30905 4.41710 4.54620 4.55774 4.64801 4.76414 4.88025 4.90369 5.08946 5.15031 5.17548 5.18205 5.38328 5.43037 5.46092 5.52264 5.69406 5.74127 6.05433 6.08316 6.50508 6.62159 6.77568 7.03405 7.28198 7.40811 8.77996 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.040198 B = 0.002620 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.376632 B =10686.235212 C =10929.326758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.042 3.958 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.566 4.566 8 H 0.045 0.955 9 C 0.236 3.764 10 O -0.593 6.593 11 C -0.127 4.127 12 C 0.099 3.901 13 N -0.608 5.608 14 C 0.503 3.497 15 O -0.576 6.576 16 C 0.128 3.872 17 N -0.371 5.371 18 C 0.062 3.938 19 C -0.217 4.217 20 C -0.080 4.080 21 C -0.180 4.180 22 C -0.168 4.168 23 C 0.036 3.964 24 N -0.321 5.321 25 C 0.132 3.868 26 H 0.273 0.727 27 H 0.381 0.619 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.170 0.830 34 H 0.213 0.787 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.190 0.810 41 H 0.040 0.960 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 -18.825 -10.182 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.161 4.161 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.604 4.604 8 H 0.063 0.937 9 C 0.196 3.804 10 O -0.402 6.402 11 C -0.166 4.166 12 C -0.022 4.022 13 N -0.342 5.342 14 C 0.291 3.709 15 O -0.456 6.456 16 C 0.004 3.996 17 N -0.153 5.153 18 C -0.083 4.083 19 C -0.228 4.228 20 C -0.099 4.099 21 C -0.217 4.217 22 C -0.205 4.205 23 C -0.151 4.151 24 N -0.141 5.141 25 C 0.008 3.992 26 H 0.082 0.918 27 H 0.231 0.769 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.187 0.813 34 H 0.230 0.770 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.687 -18.117 -9.954 20.846 hybrid contribution 0.326 1.121 0.415 1.239 sum -2.361 -16.997 -9.538 19.633 Atomic orbital electron populations 1.69730 1.06349 1.28457 1.49351 1.25517 0.95869 1.01679 0.93003 0.85594 0.78559 0.79455 0.78293 1.19818 1.20212 1.20580 1.21688 0.93685 0.92100 1.52945 0.93662 1.19597 0.86976 0.89745 0.84089 1.86122 1.49205 1.54277 1.50589 1.23072 1.01687 0.93515 0.98290 1.22686 0.83665 0.94385 1.01469 1.48664 1.21965 1.21795 1.41780 1.21015 0.85918 0.80719 0.83202 1.90736 1.23090 1.71511 1.60219 1.21697 0.93602 0.85197 0.99129 1.48119 1.09853 1.05721 1.51593 1.22888 1.01741 0.82610 1.01061 1.19588 0.93784 0.95533 1.13913 1.20238 1.01091 0.87907 1.00691 1.23053 0.92748 1.02447 1.03457 1.23048 1.02912 1.02623 0.91931 1.24089 1.00735 0.89822 1.00434 1.77455 0.93602 1.22678 1.20368 1.21734 0.96619 0.90347 0.90473 0.91775 0.76949 0.92584 0.89789 0.87307 0.89735 0.84605 0.81260 0.77002 0.85967 0.89306 0.87418 0.87173 0.89588 0.79355 0.94118 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.62 10.71 21.45 0.23 -44.39 16 2 C 0.04 2.10 5.24 84.66 0.44 2.54 16 3 Si 0.96 41.16 29.54 68.60 2.03 43.19 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.57 -29.93 8.22 25.60 0.21 -29.72 16 8 H 0.05 2.49 7.63 -2.91 -0.02 2.47 16 9 C 0.24 11.19 0.85 -10.34 -0.01 11.18 16 10 O -0.59 -29.07 13.06 -148.98 -1.95 -31.02 16 11 C -0.13 -5.06 5.43 31.99 0.17 -4.88 16 12 C 0.10 2.95 6.68 86.86 0.58 3.54 16 13 N -0.61 -22.35 3.33 -811.78 -2.70 -25.05 16 14 C 0.50 17.92 7.88 87.66 0.69 18.61 16 15 O -0.58 -26.57 16.05 -3.06 -0.05 -26.61 16 16 C 0.13 2.93 6.00 85.63 0.51 3.45 16 17 N -0.37 -10.06 3.39 -351.81 -1.19 -11.25 16 18 C 0.06 1.28 11.36 83.54 0.95 2.23 16 19 C -0.22 -4.78 5.76 -20.14 -0.12 -4.90 16 20 C -0.08 -1.27 6.25 -11.54 -0.07 -1.34 16 21 C -0.18 -2.56 10.03 30.62 0.31 -2.25 16 22 C -0.17 -2.22 10.24 30.62 0.31 -1.91 16 23 C 0.04 0.96 11.35 85.24 0.97 1.93 16 24 N -0.32 -10.74 11.66 -57.02 -0.66 -11.40 16 25 C 0.13 6.02 6.23 86.73 0.54 6.57 16 26 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 27 H 0.38 18.54 7.52 -74.06 -0.56 17.98 16 28 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 29 H 0.08 3.44 7.53 -2.39 -0.02 3.42 16 30 H 0.11 2.27 7.48 -2.39 -0.02 2.25 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.14 2.49 7.85 -2.39 -0.02 2.47 16 33 H 0.17 2.23 8.07 -2.38 -0.02 2.22 16 34 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.35 6.98 -2.39 -0.02 1.34 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.19 4.18 7.20 -2.91 -0.02 4.16 16 41 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 42 H 0.05 2.54 7.69 -2.38 -0.02 2.52 16 Total: -1.00 -71.63 351.70 1.68 -69.95 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.48 Total: 31.55 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.49 Total: 5.03 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -4.33 Total: -92.09 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -2.00 Total: -57.63 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -71.63 1.68 -69.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597800952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.491 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds