Wall clock time and date at job start Fri Apr 10 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00129 * 2 1 4 4 H 1.48503 * 109.46965 * 269.99776 * 3 2 1 5 5 H 1.48506 * 109.47214 * 29.99715 * 3 2 1 6 6 H 1.48501 * 109.47050 * 149.99898 * 3 2 1 7 7 C 1.37880 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99530 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.27526 * 7 2 1 10 10 O 1.42902 * 110.64377 * 300.43068 * 9 7 2 11 11 C 1.55157 * 110.72151 * 177.28325 * 9 7 2 12 12 C 1.54914 * 101.58104 * 206.13787 * 11 9 7 13 13 N 1.47425 * 104.83048 * 37.01104 * 12 11 9 14 14 C 1.34779 * 125.64348 * 155.91156 * 13 12 11 15 15 O 1.21605 * 119.99350 * 178.47174 * 14 13 12 16 16 C 1.47419 * 120.00159 * 358.47741 * 14 13 12 17 17 C 1.41287 * 126.41864 * 8.61465 * 16 14 13 18 18 N 1.30444 * 108.02597 * 179.97438 * 17 16 14 19 19 N 1.39932 * 108.89908 * 0.02562 * 18 17 16 20 20 C 1.46499 * 125.75667 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47241 * 304.98105 * 20 19 18 22 22 C 1.53005 * 117.49367 * 243.74517 * 21 20 19 23 23 C 1.52995 * 117.49746 * 175.08741 * 21 20 19 24 24 C 1.34265 * 108.49169 * 359.75111 * 19 18 17 25 25 C 1.47317 * 108.73988 * 335.71145 * 13 12 11 26 26 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00262 * 59.29252 * 10 9 7 28 28 H 1.08999 * 111.00333 * 324.21461 * 11 9 7 29 29 H 1.09002 * 110.99967 * 88.02267 * 11 9 7 30 30 H 1.09000 * 110.36323 * 155.85229 * 12 11 9 31 31 H 1.08998 * 110.36051 * 278.17168 * 12 11 9 32 32 H 1.08009 * 125.98808 * 359.94908 * 17 16 14 33 33 H 1.09001 * 109.46564 * 64.97872 * 20 19 18 34 34 H 1.08998 * 109.47197 * 184.97506 * 20 19 18 35 35 H 1.08995 * 115.55260 * 29.41003 * 21 20 19 36 36 H 1.08996 * 117.50043 * 359.97438 * 22 21 20 37 37 H 1.08997 * 117.49415 * 145.01914 * 22 21 20 38 38 H 1.09003 * 117.50229 * 214.97540 * 23 21 20 39 39 H 1.09005 * 117.50154 * 359.97438 * 23 21 20 40 40 H 1.07995 * 126.29482 * 180.24489 * 24 19 18 41 41 H 1.08997 * 110.06756 * 241.87965 * 25 13 12 42 42 H 1.08999 * 109.84727 * 120.61075 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0052 10 8 0.4077 -2.5991 1.1442 11 6 2.2321 -3.6993 -0.0722 12 6 1.3499 -4.7855 -0.7367 13 7 0.5316 -4.0560 -1.7225 14 6 -0.0315 -4.5897 -2.8246 15 8 -0.7122 -3.8964 -3.5559 16 6 0.1778 -6.0136 -3.1435 17 6 0.7929 -6.9775 -2.3135 18 7 0.7885 -8.1177 -2.9472 19 7 0.1801 -7.9405 -4.1948 20 6 -0.0188 -8.9819 -5.2058 21 6 1.3245 -9.6360 -5.5353 22 6 1.8551 -9.4799 -6.9619 23 6 1.3127 -10.8314 -6.4902 24 6 -0.1951 -6.6562 -4.3071 25 6 0.4269 -2.6482 -1.3015 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2492 -1.8928 1.2127 28 1 3.0960 -3.4634 -0.6937 29 1 2.5438 -4.0053 0.9265 30 1 1.9733 -5.5275 -1.2358 31 1 0.7119 -5.2631 0.0068 32 1 1.1963 -6.8011 -1.3272 33 1 -0.7053 -9.7358 -4.8205 34 1 -0.4374 -8.5367 -6.1084 35 1 2.0538 -9.6460 -4.7254 36 1 1.2470 -8.9116 -7.6657 37 1 2.9335 -9.3876 -7.0904 38 1 2.0345 -11.6277 -6.3087 39 1 0.3479 -11.1521 -6.8833 40 1 -0.6947 -6.2078 -5.1530 41 1 -0.6150 -2.3916 -1.1099 42 1 0.8343 -1.9989 -2.0764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601653568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:28 Heat of formation + Delta-G solvation = 31.902975 kcal Electronic energy + Delta-G solvation = -24805.487575 eV Core-core repulsion = 21174.637068 eV Total energy + Delta-G solvation = -3630.850506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34932 -39.03847 -37.86682 -36.98354 -34.33178 -33.00520 -32.16808 -30.42585 -29.80809 -28.30945 -27.07676 -25.06484 -23.37549 -22.83354 -21.89477 -21.42767 -20.39573 -19.54748 -19.02986 -17.35519 -17.12050 -16.16419 -15.82001 -15.40234 -15.27009 -14.86489 -14.70986 -14.47106 -13.99593 -13.88615 -13.30517 -13.13523 -12.96367 -12.77629 -12.56438 -12.11844 -12.01759 -11.95967 -11.52629 -11.36973 -11.03700 -10.96635 -10.89397 -10.66588 -10.59544 -10.51052 -10.47941 -10.12667 -9.54829 -9.32420 -9.26488 -8.64607 -8.60239 -8.27543 -7.77723 -6.26044 -4.34344 1.64279 2.24630 2.35041 3.23051 3.30545 3.32646 3.33293 3.71377 3.91935 4.04088 4.29439 4.37728 4.48193 4.61116 4.77346 4.85245 5.01051 5.02750 5.08213 5.19625 5.24993 5.41664 5.44396 5.52754 5.65529 5.66099 5.77625 5.81218 5.86607 6.03897 6.25120 6.48550 6.53946 6.80224 6.81252 6.90583 7.05220 7.31171 7.43111 7.57594 7.76208 8.04306 8.31995 8.68436 8.87707 9.33492 9.43335 10.81770 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.029856 B = 0.002909 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.623976 B = 9623.608917 C = 9753.861185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.118 4.118 12 C 0.091 3.909 13 N -0.606 5.606 14 C 0.597 3.403 15 O -0.562 6.562 16 C -0.276 4.276 17 C 0.067 3.933 18 N -0.300 5.300 19 N -0.363 5.363 20 C 0.164 3.836 21 C -0.170 4.170 22 C -0.178 4.178 23 C -0.170 4.170 24 C 0.119 3.881 25 C 0.106 3.894 26 H 0.270 0.730 27 H 0.384 0.616 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.203 0.797 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.185 0.815 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -18.216 -9.989 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.156 4.156 12 C -0.032 4.032 13 N -0.337 5.337 14 C 0.386 3.614 15 O -0.443 6.443 16 C -0.291 4.291 17 C -0.120 4.120 18 N -0.120 5.120 19 N -0.142 5.142 20 C 0.043 3.957 21 C -0.189 4.189 22 C -0.215 4.215 23 C -0.207 4.207 24 C -0.032 4.032 25 C -0.016 4.016 26 H 0.080 0.920 27 H 0.235 0.765 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.219 0.781 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.202 0.798 41 H 0.084 0.916 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.559 -19.622 -10.373 22.249 hybrid contribution -0.180 2.297 -0.226 2.315 sum 1.379 -17.325 -10.599 20.356 Atomic orbital electron populations 1.69649 1.05987 1.27907 1.49833 1.25076 0.95050 0.99753 0.93440 0.86405 0.79796 0.82459 0.78259 1.20452 1.21009 1.19706 1.21518 0.93682 0.90141 1.52165 0.91545 1.19496 0.86219 0.92078 0.81506 1.86087 1.51700 1.54857 1.46832 1.22773 0.97586 0.95064 1.00222 1.22699 0.93603 0.95760 0.91156 1.48592 1.50158 1.12504 1.22496 1.16870 0.79320 0.85064 0.80187 1.90732 1.40898 1.62483 1.50163 1.20392 1.15280 0.95935 0.97468 1.24892 0.97139 0.89343 1.00612 1.77112 1.19380 1.23310 0.92223 1.48428 1.44704 1.07425 1.13660 1.21330 0.96542 0.88913 0.88925 1.22566 0.98782 1.02604 0.94903 1.23130 1.01818 1.00079 0.96453 1.22985 1.03233 0.91714 1.02807 1.22901 0.96870 0.84016 0.99379 1.23055 1.01686 0.77883 0.98940 0.91986 0.76508 0.90470 0.90458 0.91075 0.91443 0.78092 0.89034 0.88330 0.86261 0.88455 0.88474 0.88293 0.88416 0.79794 0.91611 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 10.96 55.43 0.61 -23.26 16 2 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.99 8.11 -34.44 -0.28 -14.27 16 8 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 9 C 0.25 5.96 0.85 -89.93 -0.08 5.88 16 10 O -0.59 -14.68 13.08 -35.23 -0.46 -15.15 16 11 C -0.12 -2.33 6.23 -24.58 -0.15 -2.48 16 12 C 0.09 1.58 5.26 -2.53 -0.01 1.57 16 13 N -0.61 -12.68 3.33 -171.54 -0.57 -13.25 16 14 C 0.60 12.33 7.84 -12.52 -0.10 12.24 16 15 O -0.56 -13.42 17.24 5.27 0.09 -13.33 16 16 C -0.28 -4.55 6.06 -105.07 -0.64 -5.19 16 17 C 0.07 0.98 10.29 -16.98 -0.17 0.80 16 18 N -0.30 -4.20 12.14 30.86 0.37 -3.83 16 19 N -0.36 -4.37 3.65 -60.81 -0.22 -4.59 16 20 C 0.16 1.30 6.77 -4.04 -0.03 1.27 16 21 C -0.17 -1.33 5.92 -90.62 -0.54 -1.86 16 22 C -0.18 -1.16 10.18 -26.69 -0.27 -1.44 16 23 C -0.17 -0.98 10.25 -26.70 -0.27 -1.25 16 24 C 0.12 1.61 11.26 -16.56 -0.19 1.43 16 25 C 0.11 2.58 5.39 -2.90 -0.02 2.56 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.38 9.92 7.24 45.56 0.33 10.25 16 28 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.07 1.03 5.27 -51.93 -0.27 0.76 16 31 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 32 H 0.20 2.58 4.81 -52.48 -0.25 2.33 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.55 7.80 -51.93 -0.40 0.15 16 35 H 0.12 1.18 7.90 -51.93 -0.41 0.77 16 36 H 0.10 0.55 8.03 -51.93 -0.42 0.14 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.07 1.75 8.00 -51.93 -0.42 1.34 16 42 H 0.07 1.76 7.81 -51.93 -0.41 1.35 16 LS Contribution 348.71 15.07 5.26 5.26 Total: -1.00 -31.49 348.71 -7.95 -39.43 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.16 Total: 12.26 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.84 Total: 0.99 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.19 Total: -44.93 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.37 Total: -28.47 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.49 -7.95 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601653568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.337 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds