Wall clock time and date at job start Fri Apr 10 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00129 * 2 1 4 4 H 1.48503 * 109.46965 * 269.99776 * 3 2 1 5 5 H 1.48506 * 109.47214 * 29.99715 * 3 2 1 6 6 H 1.48501 * 109.47050 * 149.99898 * 3 2 1 7 7 C 1.37880 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99530 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.27526 * 7 2 1 10 10 O 1.42902 * 110.64377 * 300.43068 * 9 7 2 11 11 C 1.55157 * 110.72151 * 177.28325 * 9 7 2 12 12 C 1.54914 * 101.58104 * 206.13787 * 11 9 7 13 13 N 1.47425 * 104.83048 * 37.01104 * 12 11 9 14 14 C 1.34779 * 125.64348 * 155.91156 * 13 12 11 15 15 O 1.21605 * 119.99350 * 178.47174 * 14 13 12 16 16 C 1.47419 * 120.00159 * 358.47741 * 14 13 12 17 17 C 1.41287 * 126.41864 * 8.61465 * 16 14 13 18 18 N 1.30444 * 108.02597 * 179.97438 * 17 16 14 19 19 N 1.39932 * 108.89908 * 0.02562 * 18 17 16 20 20 C 1.46499 * 125.75667 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47241 * 304.98105 * 20 19 18 22 22 C 1.53005 * 117.49367 * 243.74517 * 21 20 19 23 23 C 1.52995 * 117.49746 * 175.08741 * 21 20 19 24 24 C 1.34265 * 108.49169 * 359.75111 * 19 18 17 25 25 C 1.47317 * 108.73988 * 335.71145 * 13 12 11 26 26 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00262 * 59.29252 * 10 9 7 28 28 H 1.08999 * 111.00333 * 324.21461 * 11 9 7 29 29 H 1.09002 * 110.99967 * 88.02267 * 11 9 7 30 30 H 1.09000 * 110.36323 * 155.85229 * 12 11 9 31 31 H 1.08998 * 110.36051 * 278.17168 * 12 11 9 32 32 H 1.08009 * 125.98808 * 359.94908 * 17 16 14 33 33 H 1.09001 * 109.46564 * 64.97872 * 20 19 18 34 34 H 1.08998 * 109.47197 * 184.97506 * 20 19 18 35 35 H 1.08995 * 115.55260 * 29.41003 * 21 20 19 36 36 H 1.08996 * 117.50043 * 359.97438 * 22 21 20 37 37 H 1.08997 * 117.49415 * 145.01914 * 22 21 20 38 38 H 1.09003 * 117.50229 * 214.97540 * 23 21 20 39 39 H 1.09005 * 117.50154 * 359.97438 * 23 21 20 40 40 H 1.07995 * 126.29482 * 180.24489 * 24 19 18 41 41 H 1.08997 * 110.06756 * 241.87965 * 25 13 12 42 42 H 1.08999 * 109.84727 * 120.61075 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0052 10 8 0.4077 -2.5991 1.1442 11 6 2.2321 -3.6993 -0.0722 12 6 1.3499 -4.7855 -0.7367 13 7 0.5316 -4.0560 -1.7225 14 6 -0.0315 -4.5897 -2.8246 15 8 -0.7122 -3.8964 -3.5559 16 6 0.1778 -6.0136 -3.1435 17 6 0.7929 -6.9775 -2.3135 18 7 0.7885 -8.1177 -2.9472 19 7 0.1801 -7.9405 -4.1948 20 6 -0.0188 -8.9819 -5.2058 21 6 1.3245 -9.6360 -5.5353 22 6 1.8551 -9.4799 -6.9619 23 6 1.3127 -10.8314 -6.4902 24 6 -0.1951 -6.6562 -4.3071 25 6 0.4269 -2.6482 -1.3015 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2492 -1.8928 1.2127 28 1 3.0960 -3.4634 -0.6937 29 1 2.5438 -4.0053 0.9265 30 1 1.9733 -5.5275 -1.2358 31 1 0.7119 -5.2631 0.0068 32 1 1.1963 -6.8011 -1.3272 33 1 -0.7053 -9.7358 -4.8205 34 1 -0.4374 -8.5367 -6.1084 35 1 2.0538 -9.6460 -4.7254 36 1 1.2470 -8.9116 -7.6657 37 1 2.9335 -9.3876 -7.0904 38 1 2.0345 -11.6277 -6.3087 39 1 0.3479 -11.1521 -6.8833 40 1 -0.6947 -6.2078 -5.1530 41 1 -0.6150 -2.3916 -1.1099 42 1 0.8343 -1.9989 -2.0764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601653568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:28 Heat of formation + Delta-G solvation = 10.148577 kcal Electronic energy + Delta-G solvation = -24806.430916 eV Core-core repulsion = 21174.637068 eV Total energy + Delta-G solvation = -3631.793848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45842 -40.64518 -38.80510 -38.39140 -36.11778 -34.18372 -33.97804 -31.90590 -31.18444 -29.84360 -28.30617 -26.80500 -24.91424 -23.29495 -22.80169 -22.71916 -21.42453 -21.18781 -20.39290 -19.09229 -18.49423 -17.38576 -17.23845 -16.82783 -16.46961 -16.36458 -16.02465 -15.89089 -15.12514 -14.84123 -14.77470 -14.74491 -14.55956 -14.03320 -13.85611 -13.62513 -13.41169 -13.21332 -12.82429 -12.73252 -12.41717 -12.39464 -12.29499 -12.27291 -12.09034 -11.93177 -11.43058 -11.14223 -11.05651 -10.92900 -10.62688 -10.54085 -10.25207 -9.83756 -9.42887 -8.24964 -6.40563 0.51178 1.13730 1.34528 1.42217 1.44071 1.53906 2.16492 2.38965 2.44549 2.82698 3.01631 3.30490 3.69288 3.79822 3.81677 3.88281 3.95577 4.01564 4.12934 4.16335 4.24503 4.32899 4.37164 4.51246 4.54755 4.63625 4.72732 4.77670 4.77986 4.99734 5.04983 5.14701 5.18577 5.22884 5.27294 5.35722 5.42564 5.55756 5.77099 5.86282 6.07351 6.49274 6.64796 6.74219 7.25229 7.30450 7.38275 8.81254 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.029856 B = 0.002909 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.623976 B = 9623.608917 C = 9753.861185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.113 4.113 12 C 0.096 3.904 13 N -0.612 5.612 14 C 0.593 3.407 15 O -0.606 6.606 16 C -0.309 4.309 17 C 0.070 3.930 18 N -0.309 5.309 19 N -0.350 5.350 20 C 0.155 3.845 21 C -0.185 4.185 22 C -0.180 4.180 23 C -0.154 4.154 24 C 0.135 3.865 25 C 0.123 3.877 26 H 0.270 0.730 27 H 0.376 0.624 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.216 0.784 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.207 0.793 41 H 0.031 0.969 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -20.428 -10.975 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.396 6.396 11 C -0.151 4.151 12 C -0.025 4.025 13 N -0.343 5.343 14 C 0.385 3.615 15 O -0.490 6.490 16 C -0.324 4.324 17 C -0.116 4.116 18 N -0.129 5.129 19 N -0.128 5.128 20 C 0.036 3.964 21 C -0.204 4.204 22 C -0.217 4.217 23 C -0.191 4.191 24 C -0.018 4.018 25 C 0.000 4.000 26 H 0.079 0.921 27 H 0.226 0.774 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.232 0.768 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.224 0.776 41 H 0.049 0.951 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.405 -21.905 -11.349 24.787 hybrid contribution -0.456 2.881 -0.010 2.917 sum 1.950 -19.024 -11.358 22.242 Atomic orbital electron populations 1.69759 1.07112 1.28461 1.50293 1.25828 0.95813 1.02835 0.93169 0.85468 0.78841 0.78752 0.78048 1.20533 1.20710 1.18898 1.21857 0.93968 0.91385 1.52238 0.91425 1.19710 0.86718 0.93582 0.80735 1.86076 1.51657 1.54470 1.47377 1.22780 0.97037 0.93658 1.01621 1.22868 0.93425 0.95412 0.90814 1.48627 1.50910 1.11314 1.23461 1.17493 0.78195 0.86596 0.79248 1.90690 1.42831 1.64015 1.51489 1.20101 1.18674 0.93868 0.99734 1.25000 0.96806 0.88838 1.01000 1.77099 1.19686 1.23007 0.93102 1.48774 1.42846 1.07659 1.13514 1.21786 0.97107 0.88489 0.89028 1.22432 0.98314 1.04783 0.94880 1.23219 1.01858 1.00949 0.95671 1.23085 1.04088 0.91144 1.00783 1.23208 0.95321 0.84335 0.98914 1.22565 0.99273 0.79821 0.98383 0.92063 0.77391 0.89820 0.88836 0.87359 0.90293 0.76827 0.87584 0.85423 0.88662 0.87270 0.88983 0.88011 0.86581 0.77640 0.95078 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.48 10.96 21.45 0.24 -50.24 16 2 C 0.02 1.28 5.27 84.65 0.45 1.73 16 3 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.56 -29.41 8.11 25.60 0.21 -29.20 16 8 H 0.07 3.47 7.77 -2.91 -0.02 3.45 16 9 C 0.23 11.40 0.85 -10.35 -0.01 11.39 16 10 O -0.59 -30.02 13.08 -148.98 -1.95 -31.97 16 11 C -0.11 -4.33 6.23 31.99 0.20 -4.13 16 12 C 0.10 3.23 5.26 86.86 0.46 3.68 16 13 N -0.61 -25.94 3.33 -814.89 -2.72 -28.65 16 14 C 0.59 24.80 7.84 86.66 0.68 25.48 16 15 O -0.61 -29.88 17.24 -4.05 -0.07 -29.95 16 16 C -0.31 -9.84 6.06 -20.15 -0.12 -9.96 16 17 C 0.07 1.91 10.29 85.65 0.88 2.79 16 18 N -0.31 -7.96 12.14 -56.27 -0.68 -8.64 16 19 N -0.35 -7.52 3.65 -346.29 -1.26 -8.78 16 20 C 0.15 1.95 6.77 86.38 0.58 2.54 16 21 C -0.19 -2.44 5.92 -10.79 -0.06 -2.50 16 22 C -0.18 -1.90 10.18 30.62 0.31 -1.59 16 23 C -0.15 -1.30 10.25 30.62 0.31 -0.99 16 24 C 0.14 3.39 11.26 84.28 0.95 4.34 16 25 C 0.12 6.25 5.39 86.68 0.47 6.71 16 26 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.38 20.20 7.24 -74.06 -0.54 19.66 16 28 H 0.08 3.07 8.03 -2.39 -0.02 3.05 16 29 H 0.09 3.26 8.14 -2.39 -0.02 3.25 16 30 H 0.11 2.85 5.27 -2.39 -0.01 2.84 16 31 H 0.08 2.49 8.02 -2.39 -0.02 2.47 16 32 H 0.22 4.95 4.81 -2.91 -0.01 4.94 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.13 0.89 7.80 -2.39 -0.02 0.88 16 35 H 0.10 1.75 7.90 -2.39 -0.02 1.73 16 36 H 0.11 0.89 8.03 -2.39 -0.02 0.87 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.21 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.03 1.75 8.00 -2.39 -0.02 1.74 16 42 H 0.03 1.88 7.81 -2.39 -0.02 1.86 16 Total: -1.00 -70.68 348.71 1.40 -69.28 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.51 Total: 34.21 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 5.30 Total: 10.29 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -4.43 Total: -96.32 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -2.02 Total: -61.92 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -70.68 1.40 -69.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601653568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.430 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds