Wall clock time and date at job start Fri Apr 10 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38029 * 119.51550 * 2 1 4 4 C 1.39925 * 119.13174 * 180.25337 * 3 2 1 5 5 C 1.48159 * 120.89121 * 179.77878 * 4 3 2 6 6 O 1.21518 * 120.00222 * 140.37745 * 5 4 3 7 7 N 1.34778 * 120.00071 * 320.38104 * 5 4 3 8 8 C 1.47073 * 120.88224 * 183.99054 * 7 5 4 9 9 C 1.53243 * 108.52361 * 128.83772 * 8 7 5 10 10 N 1.46900 * 109.33922 * 53.82670 * 9 8 7 11 11 C 1.46902 * 111.00206 * 172.74801 * 10 9 8 12 12 C 1.50706 * 109.46507 * 64.77543 * 11 10 9 13 13 H 1.07994 * 120.00491 * 354.70592 * 12 11 10 14 14 C 1.37881 * 119.99340 * 174.70561 * 12 11 10 15 15 N 1.31512 * 120.00302 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99515 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47246 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46981 * 120.00344 * 16 14 12 19 19 H 1.48501 * 109.47179 * 240.00046 * 16 14 12 20 20 C 1.46903 * 111.26954 * 296.89963 * 10 9 8 21 21 C 1.47079 * 120.87963 * 4.01593 * 7 5 4 22 22 C 1.39613 * 118.21717 * 359.50093 * 4 3 2 23 23 C 1.38853 * 118.94903 * 0.25002 * 22 4 3 24 24 O 1.35684 * 119.62232 * 179.97438 * 23 22 4 25 25 N 1.31874 * 119.51387 * 179.74614 * 2 1 3 26 26 H 1.09002 * 109.47295 * 270.25839 * 1 2 3 27 27 H 1.09007 * 109.46827 * 30.25639 * 1 2 3 28 28 H 1.08995 * 109.47256 * 150.25160 * 1 2 3 29 29 H 1.08000 * 120.43016 * 0.02562 * 3 2 1 30 30 H 1.08993 * 109.63442 * 9.12706 * 8 7 5 31 31 H 1.09001 * 109.62839 * 248.54328 * 8 7 5 32 32 H 1.08991 * 109.49588 * 173.78472 * 9 8 7 33 33 H 1.09001 * 109.49186 * 293.87373 * 9 8 7 34 34 H 1.09001 * 109.46912 * 184.77246 * 11 10 9 35 35 H 1.09000 * 109.47029 * 304.77805 * 11 10 9 36 36 H 0.96998 * 119.99954 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.49301 * 183.06488 * 20 10 9 38 38 H 1.08998 * 109.49031 * 303.14444 * 20 10 9 39 39 H 1.08996 * 109.63352 * 111.45468 * 21 7 5 40 40 H 1.08999 * 109.62922 * 350.86878 * 21 7 5 41 41 H 1.08001 * 120.52761 * 180.23201 * 22 4 3 42 42 H 0.96696 * 114.00226 * 90.00220 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2012 0.0000 4 6 3.5862 1.1918 -0.0054 5 6 4.3553 2.4581 -0.0105 6 8 5.3662 2.5577 0.6565 7 7 3.9338 3.4996 -0.7549 8 6 4.7275 4.7346 -0.8432 9 6 4.9147 5.0884 -2.3224 10 7 3.6017 5.1456 -2.9788 11 6 3.7219 5.6487 -4.3537 12 6 4.5224 4.6729 -5.1774 13 1 4.9758 3.8133 -4.7065 14 6 4.6758 4.8778 -6.5322 15 7 4.1232 5.9243 -7.1058 16 14 5.6685 3.6687 -7.5530 17 1 6.1807 2.5847 -6.6768 18 1 4.8026 3.0840 -8.6084 19 1 6.8109 4.3760 -8.1856 20 6 2.9359 3.8363 -2.9536 21 6 2.6677 3.4313 -1.5002 22 6 4.2381 -0.0428 0.0001 23 6 3.4774 -1.2044 0.0054 24 8 4.0968 -2.4116 0.0102 25 7 2.1566 -1.1476 0.0051 26 1 -0.3634 0.0046 1.0277 27 1 -0.3633 0.8877 -0.5179 28 1 -0.3633 -0.8922 -0.5099 29 1 1.6461 2.1360 0.0004 30 1 5.7008 4.5785 -0.3781 31 1 4.2023 5.5444 -0.3367 32 1 5.4051 6.0582 -2.4052 33 1 5.5290 4.3273 -2.8035 34 1 2.7284 5.7611 -4.7877 35 1 4.2258 6.6152 -4.3442 36 1 4.2315 6.0686 -8.0589 37 1 1.9914 3.8981 -3.4942 38 1 3.5778 3.0927 -3.4259 39 1 1.9445 4.1158 -1.0569 40 1 2.2792 2.4134 -1.4696 41 1 5.3169 -0.0935 0.0000 42 1 4.2767 -2.7578 0.8950 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:40 Heat of formation + Delta-G solvation = -16.336049 kcal Electronic energy + Delta-G solvation = -25276.617297 eV Core-core repulsion = 21643.674990 eV Total energy + Delta-G solvation = -3632.942307 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17542 -39.69919 -37.65341 -37.42693 -34.67194 -33.34260 -32.41737 -31.99545 -30.62967 -28.38754 -27.74031 -25.78483 -24.34049 -23.66290 -22.73641 -22.16005 -20.58614 -19.30044 -18.51110 -17.53941 -16.75906 -16.50958 -16.33182 -15.72958 -15.44360 -15.14884 -14.85022 -14.51935 -14.26516 -13.93935 -13.79998 -13.61799 -13.43316 -12.84385 -12.76669 -12.50209 -12.44061 -12.05619 -11.93429 -11.83732 -11.24303 -11.12990 -11.09490 -10.75024 -10.71342 -10.38485 -10.34438 -10.01757 -9.95368 -9.74902 -9.49888 -9.01751 -8.60303 -8.52001 -7.35737 -6.12079 -4.21578 0.53777 0.68742 2.54492 2.90818 3.21193 3.22553 3.30069 3.33825 3.47560 4.13930 4.27267 4.33880 4.62040 4.71706 4.80497 4.93969 5.16889 5.18626 5.20360 5.25365 5.31661 5.36924 5.45785 5.58666 5.62840 5.70546 5.76531 5.77944 5.88953 5.97440 6.15068 6.31630 6.52071 6.57497 6.61791 7.11524 7.18672 7.35795 7.41518 7.61104 7.79000 7.87509 8.03380 8.09555 8.17245 8.88127 9.46377 10.93166 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.003983 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.631365 B = 7028.463906 C = 7505.557136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.150 3.850 3 C -0.159 4.159 4 C -0.056 4.056 5 C 0.557 3.443 6 O -0.537 6.537 7 N -0.592 5.592 8 C 0.116 3.884 9 C 0.048 3.952 10 N -0.540 5.540 11 C 0.187 3.813 12 C -0.553 4.553 13 H 0.056 0.944 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.049 3.951 21 C 0.087 3.913 22 C -0.141 4.141 23 C 0.315 3.685 24 O -0.478 6.478 25 N -0.493 5.493 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.149 0.851 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 -9.597 16.122 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.013 3.987 3 C -0.179 4.179 4 C -0.067 4.067 5 C 0.344 3.656 6 O -0.415 6.415 7 N -0.324 5.324 8 C -0.006 4.006 9 C -0.081 4.081 10 N -0.264 5.264 11 C 0.062 3.938 12 C -0.592 4.592 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.080 4.080 21 C -0.035 4.035 22 C -0.163 4.163 23 C 0.136 3.864 24 O -0.285 6.285 25 N -0.213 5.213 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.172 0.828 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.167 0.833 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.369 -9.830 15.948 19.787 hybrid contribution 1.677 -0.582 -0.912 1.996 sum -4.692 -10.412 15.036 18.881 Atomic orbital electron populations 1.20791 0.87817 1.04220 1.03486 1.20995 0.97043 0.86603 0.94082 1.22398 0.93440 1.00390 1.01693 1.20230 0.93864 0.94037 0.98536 1.18138 0.84444 0.82887 0.80128 1.90773 1.25459 1.82732 1.42521 1.48085 1.23232 1.14817 1.46280 1.21926 0.96150 0.84448 0.98082 1.22275 0.92539 1.01620 0.91705 1.62519 1.18894 1.23380 1.21623 1.19780 0.97522 0.95136 0.81355 1.21751 1.33610 1.10141 0.93669 0.92615 1.24940 0.95439 0.95282 0.97909 1.69940 1.43939 1.27536 1.11291 0.86611 0.80135 0.81349 0.80386 1.19906 1.20835 1.20822 1.22240 1.00278 0.92485 0.93004 1.22666 0.85098 1.02326 0.93417 1.22131 1.02351 0.90694 1.01162 1.18916 0.86651 0.85144 0.95708 1.84813 1.77012 1.32740 1.33927 1.66833 1.10008 1.30875 1.13624 0.89981 0.89919 0.90039 0.82814 0.89300 0.90810 0.90073 0.93929 0.94474 0.95223 0.92753 0.90041 0.93714 0.90342 0.88867 0.83320 0.74120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.16 36.00 0.37 -0.39 16 2 C 0.15 1.59 6.78 -82.65 -0.56 1.03 16 3 C -0.16 -1.71 7.09 -39.03 -0.28 -1.98 16 4 C -0.06 -0.74 5.38 -104.68 -0.56 -1.30 16 5 C 0.56 8.63 7.42 -12.19 -0.09 8.54 16 6 O -0.54 -9.74 16.42 5.35 0.09 -9.66 16 7 N -0.59 -8.87 3.01 -173.46 -0.52 -9.40 16 8 C 0.12 1.78 6.59 -3.60 -0.02 1.76 16 9 C 0.05 0.88 5.24 -3.70 -0.02 0.86 16 10 N -0.54 -10.64 4.83 -235.75 -1.14 -11.77 16 11 C 0.19 4.55 5.11 -4.97 -0.03 4.53 16 12 C -0.55 -14.67 7.75 -34.44 -0.27 -14.93 16 13 H 0.06 1.50 5.88 -52.49 -0.31 1.19 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 C 0.05 0.87 5.16 -3.70 -0.02 0.85 16 21 C 0.09 1.17 5.20 -3.60 -0.02 1.15 16 22 C -0.14 -1.81 9.69 -38.84 -0.38 -2.19 16 23 C 0.31 3.87 7.74 -17.16 -0.13 3.74 16 24 O -0.48 -5.03 13.56 -18.75 -0.25 -5.28 16 25 N -0.49 -6.14 10.27 -9.60 -0.10 -6.24 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.15 1.32 6.05 -52.49 -0.32 1.01 16 30 H 0.09 1.38 7.09 -51.93 -0.37 1.01 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 33 H 0.04 0.88 6.91 -51.93 -0.36 0.53 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 38 H 0.04 0.90 6.80 -51.93 -0.35 0.55 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.09 4.04 -51.93 -0.21 0.88 16 41 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.40 2.03 9.06 45.56 0.41 2.45 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -32.95 342.22 -8.01 -40.96 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.85 Total: 1.32 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.10 Total: 3.40 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -1.02 Total: -52.09 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.17 Total: -14.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.95 -8.01 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.626 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds