Wall clock time and date at job start Fri Apr 10 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99959 * 2 1 4 4 H 1.48491 * 109.47402 * 239.99969 * 3 2 1 5 5 H 1.48498 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46780 * 120.00068 * 3 2 1 7 7 C 1.37878 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00416 * 359.97438 * 7 2 1 10 10 N 1.46889 * 109.47505 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00400 * 169.99956 * 10 9 7 12 12 C 1.53240 * 109.33897 * 187.25088 * 11 10 9 13 13 N 1.47074 * 108.52550 * 306.16833 * 12 11 10 14 14 C 1.34778 * 120.88308 * 231.19185 * 13 12 11 15 15 O 1.21276 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.46501 * 109.47181 * 179.97438 * 16 14 13 18 18 C 1.35761 * 119.62485 * 89.99671 * 17 16 14 19 19 C 1.35346 * 120.70252 * 179.97438 * 18 17 16 20 20 C 1.40196 * 119.94872 * 359.97438 * 19 18 17 21 21 C 1.36400 * 119.26458 * 359.97438 * 20 19 18 22 22 C 1.34659 * 119.62348 * 270.21987 * 17 16 14 23 23 O 1.22061 * 119.98796 * 0.03541 * 22 17 16 24 24 C 1.47082 * 118.23771 * 51.45892 * 13 12 11 25 25 C 1.46909 * 110.99880 * 294.30228 * 10 9 7 26 26 H 0.97002 * 120.00069 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46907 * 59.99798 * 9 7 2 28 28 H 1.08999 * 109.46940 * 300.00463 * 9 7 2 29 29 H 1.09000 * 109.48759 * 67.29118 * 11 10 9 30 30 H 1.08997 * 109.49039 * 307.21393 * 11 10 9 31 31 H 1.09005 * 109.62328 * 186.45771 * 12 11 10 32 32 H 1.08996 * 109.62959 * 65.88316 * 12 11 10 33 33 H 1.09002 * 109.47271 * 59.99403 * 16 14 13 34 34 H 1.08999 * 109.47509 * 299.99655 * 16 14 13 35 35 H 1.08001 * 119.64874 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.02652 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.36756 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.34439 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.62712 * 68.24632 * 24 13 12 40 40 H 1.09000 * 109.63372 * 188.83716 * 24 13 12 41 41 H 1.08997 * 109.48847 * 292.70342 * 25 10 9 42 42 H 1.08994 * 109.48962 * 52.78664 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5211 -4.8936 0.2376 12 6 2.5637 -6.0032 0.4103 13 7 3.4615 -5.9863 -0.7545 14 6 3.7117 -7.1124 -1.4515 15 8 3.1943 -8.1581 -1.1204 16 6 4.6345 -7.0722 -2.6422 17 7 4.7418 -8.4131 -3.2224 18 6 3.8724 -8.7964 -4.1921 19 6 3.9521 -10.0298 -4.7436 20 6 4.9408 -10.9260 -4.3139 21 6 5.8141 -10.5389 -3.3402 22 6 5.6989 -9.2532 -2.7846 23 8 6.4702 -8.8958 -1.9087 24 6 4.0837 -4.7091 -1.1351 25 6 2.9766 -3.6491 -1.2505 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 0.8795 -5.1264 -0.6122 30 1 0.9160 -4.8192 1.1411 31 1 2.0631 -6.9695 0.4728 32 1 3.1394 -5.8266 1.3189 33 1 5.6211 -6.7334 -2.3261 34 1 4.2358 -6.3843 -3.3878 35 1 3.1091 -8.1097 -4.5271 36 1 3.2545 -10.3234 -5.5140 37 1 5.0108 -11.9118 -4.7495 38 1 6.5823 -11.2154 -2.9958 39 1 4.8026 -4.4104 -0.3722 40 1 4.5884 -4.8192 -2.0949 41 1 2.3147 -3.8993 -2.0796 42 1 3.4271 -2.6722 -1.4261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:48 Heat of formation + Delta-G solvation = -13.658276 kcal Electronic energy + Delta-G solvation = -24923.452092 eV Core-core repulsion = 21290.625901 eV Total energy + Delta-G solvation = -3632.826190 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.67103 -39.85479 -37.62217 -37.03113 -34.75473 -34.53931 -32.52320 -31.10877 -30.12305 -29.06351 -27.87190 -25.51573 -24.16469 -23.47963 -23.01077 -22.04007 -20.76718 -19.00173 -17.85009 -17.57834 -17.37199 -16.58051 -16.43470 -15.88443 -15.42787 -15.22097 -14.81481 -14.65965 -14.52002 -14.33849 -14.00039 -13.72631 -13.50953 -13.26617 -12.66421 -12.41592 -12.35392 -12.13665 -12.07761 -11.95003 -11.37895 -11.16476 -11.06493 -10.86610 -10.72566 -10.65893 -10.61116 -10.12563 -9.96810 -9.73828 -9.36536 -8.62731 -8.51469 -8.18108 -7.42407 -6.12084 -4.14680 0.61204 1.69919 2.24163 2.46846 2.98662 3.26771 3.32058 3.34119 3.51574 4.27607 4.30253 4.33024 4.37073 4.61809 4.67577 4.81529 4.95528 5.03353 5.09785 5.15443 5.23058 5.27990 5.39978 5.54282 5.64838 5.69889 5.76142 5.82340 5.93689 6.04019 6.18831 6.26139 6.33314 6.35726 6.53888 6.84782 7.13491 7.18841 7.35020 7.66842 7.85455 7.93481 8.03061 8.04494 8.39445 8.92174 9.50220 10.98621 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.029999 B = 0.002805 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.126725 B = 9980.626452 C =10127.831959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.042 3.958 12 C 0.119 3.881 13 N -0.602 5.602 14 C 0.503 3.497 15 O -0.538 6.538 16 C 0.070 3.930 17 N -0.479 5.479 18 C 0.145 3.855 19 C -0.236 4.236 20 C -0.015 4.015 21 C -0.244 4.244 22 C 0.519 3.481 23 O -0.551 6.551 24 C 0.105 3.895 25 C 0.051 3.949 26 H 0.263 0.737 27 H -0.009 1.009 28 H 0.032 0.968 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.026 0.974 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 -16.939 -11.129 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.261 5.261 11 C -0.087 4.087 12 C -0.003 4.003 13 N -0.336 5.336 14 C 0.289 3.711 15 O -0.416 6.416 16 C -0.055 4.055 17 N -0.189 5.189 18 C 0.018 3.982 19 C -0.259 4.259 20 C -0.037 4.037 21 C -0.265 4.265 22 C 0.321 3.679 23 O -0.433 6.433 24 C -0.017 4.017 25 C -0.079 4.079 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.178 0.822 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.845 -17.016 -9.970 21.225 hybrid contribution -0.388 0.926 -0.675 1.210 sum 7.458 -16.090 -10.645 20.684 Atomic orbital electron populations 1.69945 1.06115 1.27059 1.50536 1.24995 0.94867 0.99388 0.95272 0.86545 0.79434 0.82653 0.78690 1.20234 1.21343 1.20101 1.21092 0.93432 0.89846 1.50702 0.91817 1.19722 0.89946 0.87087 0.96271 1.62074 1.28181 1.02759 1.33097 1.22407 0.94852 0.90430 1.01043 1.21798 0.91645 0.99578 0.87325 1.48188 1.46703 1.08340 1.30325 1.20547 0.82223 0.83915 0.84446 1.90716 1.51855 1.29914 1.69076 1.21886 1.03555 0.83670 0.96407 1.45099 1.27618 1.14548 1.31660 1.21950 0.91517 0.97306 0.87453 1.20618 1.04414 0.93783 1.07048 1.21429 0.91081 0.98876 0.92298 1.22082 1.05166 0.96676 1.02606 1.17156 0.80720 0.86192 0.83827 1.90963 1.43255 1.77022 1.32082 1.22203 0.96434 0.82578 1.00529 1.22419 0.94951 0.99017 0.91482 0.92751 0.99084 0.94985 0.95527 0.89893 0.89384 0.90654 0.85157 0.85976 0.82237 0.83712 0.84835 0.83499 0.89969 0.90378 0.95616 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.54 8.41 -34.44 -0.29 -13.83 16 8 H 0.06 1.64 7.13 -52.49 -0.37 1.27 16 9 C 0.19 4.77 4.72 -4.98 -0.02 4.75 16 10 N -0.54 -10.62 4.62 -235.46 -1.09 -11.70 16 11 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 12 C 0.12 1.82 6.60 -3.60 -0.02 1.79 16 13 N -0.60 -8.67 3.00 -172.18 -0.52 -9.19 16 14 C 0.50 7.30 7.77 -10.99 -0.09 7.22 16 15 O -0.54 -9.70 15.88 5.56 0.09 -9.61 16 16 C 0.07 0.76 4.17 -5.19 -0.02 0.74 16 17 N -0.48 -5.53 2.07 -121.06 -0.25 -5.78 16 18 C 0.14 1.22 10.28 -16.84 -0.17 1.05 16 19 C -0.24 -1.71 10.01 -39.88 -0.40 -2.11 16 20 C -0.02 -0.12 10.10 -39.51 -0.40 -0.52 16 21 C -0.24 -2.66 9.99 -39.38 -0.39 -3.05 16 22 C 0.52 7.29 7.40 -15.45 -0.11 7.18 16 23 O -0.55 -9.80 16.64 4.86 0.08 -9.72 16 24 C 0.11 1.37 6.53 -3.36 -0.02 1.35 16 25 C 0.05 0.84 5.47 -3.45 -0.02 0.83 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H -0.01 -0.23 8.13 -51.93 -0.42 -0.65 16 28 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.39 7.99 -51.93 -0.41 0.98 16 31 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.13 1.40 7.24 -51.93 -0.38 1.03 16 34 H 0.12 0.85 7.55 -51.93 -0.39 0.46 16 35 H 0.16 0.87 8.04 -52.49 -0.42 0.45 16 36 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 0.73 6.02 -51.93 -0.31 0.42 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 1.77 6.67 -51.93 -0.35 1.43 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -35.26 347.73 -8.75 -44.01 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.93 Total: -1.45 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.08 Total: 7.52 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -1.12 Total: -51.70 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.17 Total: -19.33 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.26 -8.75 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.347 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds