Wall clock time and date at job start Fri Apr 10 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99959 * 2 1 4 4 H 1.48491 * 109.47402 * 239.99969 * 3 2 1 5 5 H 1.48498 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46780 * 120.00068 * 3 2 1 7 7 C 1.37878 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00416 * 359.97438 * 7 2 1 10 10 N 1.46889 * 109.47505 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00400 * 169.99956 * 10 9 7 12 12 C 1.53240 * 109.33897 * 187.25088 * 11 10 9 13 13 N 1.47074 * 108.52550 * 306.16833 * 12 11 10 14 14 C 1.34778 * 120.88308 * 231.19185 * 13 12 11 15 15 O 1.21276 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.46501 * 109.47181 * 179.97438 * 16 14 13 18 18 C 1.35761 * 119.62485 * 89.99671 * 17 16 14 19 19 C 1.35346 * 120.70252 * 179.97438 * 18 17 16 20 20 C 1.40196 * 119.94872 * 359.97438 * 19 18 17 21 21 C 1.36400 * 119.26458 * 359.97438 * 20 19 18 22 22 C 1.34659 * 119.62348 * 270.21987 * 17 16 14 23 23 O 1.22061 * 119.98796 * 0.03541 * 22 17 16 24 24 C 1.47082 * 118.23771 * 51.45892 * 13 12 11 25 25 C 1.46909 * 110.99880 * 294.30228 * 10 9 7 26 26 H 0.97002 * 120.00069 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46907 * 59.99798 * 9 7 2 28 28 H 1.08999 * 109.46940 * 300.00463 * 9 7 2 29 29 H 1.09000 * 109.48759 * 67.29118 * 11 10 9 30 30 H 1.08997 * 109.49039 * 307.21393 * 11 10 9 31 31 H 1.09005 * 109.62328 * 186.45771 * 12 11 10 32 32 H 1.08996 * 109.62959 * 65.88316 * 12 11 10 33 33 H 1.09002 * 109.47271 * 59.99403 * 16 14 13 34 34 H 1.08999 * 109.47509 * 299.99655 * 16 14 13 35 35 H 1.08001 * 119.64874 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.02652 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.36756 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.34439 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.62712 * 68.24632 * 24 13 12 40 40 H 1.09000 * 109.63372 * 188.83716 * 24 13 12 41 41 H 1.08997 * 109.48847 * 292.70342 * 25 10 9 42 42 H 1.08994 * 109.48962 * 52.78664 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5211 -4.8936 0.2376 12 6 2.5637 -6.0032 0.4103 13 7 3.4615 -5.9863 -0.7545 14 6 3.7117 -7.1124 -1.4515 15 8 3.1943 -8.1581 -1.1204 16 6 4.6345 -7.0722 -2.6422 17 7 4.7418 -8.4131 -3.2224 18 6 3.8724 -8.7964 -4.1921 19 6 3.9521 -10.0298 -4.7436 20 6 4.9408 -10.9260 -4.3139 21 6 5.8141 -10.5389 -3.3402 22 6 5.6989 -9.2532 -2.7846 23 8 6.4702 -8.8958 -1.9087 24 6 4.0837 -4.7091 -1.1351 25 6 2.9766 -3.6491 -1.2505 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 0.8795 -5.1264 -0.6122 30 1 0.9160 -4.8192 1.1411 31 1 2.0631 -6.9695 0.4728 32 1 3.1394 -5.8266 1.3189 33 1 5.6211 -6.7334 -2.3261 34 1 4.2358 -6.3843 -3.3878 35 1 3.1091 -8.1097 -4.5271 36 1 3.2545 -10.3234 -5.5140 37 1 5.0108 -11.9118 -4.7495 38 1 6.5823 -11.2154 -2.9958 39 1 4.8026 -4.4104 -0.3722 40 1 4.5884 -4.8192 -2.0949 41 1 2.3147 -3.8993 -2.0796 42 1 3.4271 -2.6722 -1.4261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:48 Heat of formation + Delta-G solvation = -38.549382 kcal Electronic energy + Delta-G solvation = -24924.531451 eV Core-core repulsion = 21290.625901 eV Total energy + Delta-G solvation = -3633.905550 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.53817 -41.01990 -39.00588 -37.95618 -36.05238 -35.54808 -34.42651 -32.38646 -30.88300 -30.33675 -29.25892 -27.11442 -24.97215 -24.67454 -24.15748 -23.51460 -22.12083 -20.18975 -18.77847 -18.52964 -18.43543 -18.28663 -17.38181 -17.00471 -16.64131 -16.53175 -16.16303 -16.02611 -15.59865 -15.33604 -15.31772 -15.08740 -14.68070 -14.53493 -14.07238 -13.60547 -13.46636 -13.20275 -13.05250 -12.99936 -12.79544 -12.73232 -12.58494 -12.42335 -12.34625 -12.15255 -11.79737 -11.52733 -11.30776 -11.09151 -10.78163 -10.60367 -9.87937 -9.06206 -8.97577 -8.19680 -6.29965 -0.08927 0.94030 1.35863 1.40886 1.44434 1.47168 1.54695 1.94822 2.41549 2.69900 3.12832 3.21129 3.28830 3.63473 3.74677 3.90689 3.98709 3.99520 4.11665 4.20410 4.20548 4.22284 4.36746 4.42765 4.48212 4.52754 4.68132 4.80814 4.93240 4.99597 5.03501 5.17350 5.19472 5.21594 5.36498 5.39472 5.64227 5.65024 6.02618 6.05515 6.16863 6.32957 6.55543 6.86062 6.88031 6.97359 7.40271 8.91321 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.029999 B = 0.002805 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.126725 B = 9980.626452 C =10127.831959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.522 4.522 8 H 0.070 0.930 9 C 0.210 3.790 10 N -0.544 5.544 11 C 0.048 3.952 12 C 0.127 3.873 13 N -0.605 5.605 14 C 0.501 3.499 15 O -0.578 6.578 16 C 0.072 3.928 17 N -0.482 5.482 18 C 0.130 3.870 19 C -0.229 4.229 20 C 0.008 3.992 21 C -0.282 4.282 22 C 0.498 3.502 23 O -0.611 6.611 24 C 0.115 3.885 25 C 0.050 3.950 26 H 0.264 0.736 27 H -0.037 1.037 28 H 0.002 0.998 29 H 0.022 0.978 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.169 0.831 35 H 0.194 0.806 36 H 0.183 0.817 37 H 0.170 0.830 38 H 0.146 0.854 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.026 0.974 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.258 -17.317 -13.569 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.084 3.916 10 N -0.269 5.269 11 C -0.082 4.082 12 C 0.004 3.996 13 N -0.337 5.337 14 C 0.289 3.711 15 O -0.458 6.458 16 C -0.053 4.053 17 N -0.190 5.190 18 C 0.005 3.995 19 C -0.251 4.251 20 C -0.014 4.014 21 C -0.304 4.304 22 C 0.303 3.697 23 O -0.499 6.499 24 C -0.007 4.007 25 C -0.079 4.079 26 H 0.073 0.927 27 H -0.019 1.019 28 H 0.020 0.980 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.187 0.813 35 H 0.211 0.789 36 H 0.200 0.800 37 H 0.188 0.812 38 H 0.164 0.836 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.044 0.956 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.647 -17.409 -12.454 23.086 hybrid contribution -0.746 0.941 0.008 1.200 sum 7.901 -16.468 -12.446 22.103 Atomic orbital electron populations 1.70084 1.07854 1.27970 1.51762 1.25911 0.95655 1.03233 0.94826 0.85442 0.78100 0.77879 0.79245 1.18687 1.21384 1.19552 1.21435 0.93846 0.90684 1.50039 0.91189 1.19350 0.90025 0.88757 0.93489 1.61982 1.27170 1.02488 1.35210 1.22381 0.95329 0.89794 1.00649 1.21604 0.91407 0.98439 0.88136 1.48262 1.46474 1.09064 1.29941 1.21196 0.81930 0.83015 0.84912 1.90695 1.53550 1.31256 1.70257 1.22046 1.02731 0.84548 0.95995 1.45134 1.27514 1.14468 1.31928 1.22686 0.91490 0.98773 0.86597 1.21187 1.04069 0.92943 1.06854 1.21892 0.89202 1.00311 0.89974 1.22124 1.07306 0.96023 1.04929 1.17673 0.80924 0.87403 0.83684 1.90907 1.45759 1.78278 1.34947 1.22243 0.94816 0.80556 1.03103 1.22471 0.95482 1.00005 0.89937 0.92748 1.01890 0.97993 0.96026 0.90275 0.89490 0.90484 0.85095 0.81347 0.78909 0.79984 0.81236 0.83630 0.89801 0.85817 0.95566 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 13.29 21.45 0.28 -54.48 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.52 -27.80 8.41 25.60 0.22 -27.59 16 8 H 0.07 3.57 7.13 -2.91 -0.02 3.55 16 9 C 0.21 10.62 4.72 85.56 0.40 11.02 16 10 N -0.54 -21.68 4.62 -898.87 -4.15 -25.83 16 11 C 0.05 1.65 5.62 86.38 0.49 2.13 16 12 C 0.13 3.85 6.60 86.35 0.57 4.42 16 13 N -0.60 -16.55 3.00 -817.05 -2.45 -19.00 16 14 C 0.50 13.83 7.77 87.66 0.68 14.51 16 15 O -0.58 -20.51 15.88 -3.02 -0.05 -20.56 16 16 C 0.07 1.37 4.17 85.63 0.36 1.73 16 17 N -0.48 -10.23 2.07 -655.07 -1.36 -11.58 16 18 C 0.13 1.75 10.28 83.42 0.86 2.60 16 19 C -0.23 -2.36 10.01 22.08 0.22 -2.14 16 20 C 0.01 0.10 10.10 22.32 0.23 0.33 16 21 C -0.28 -6.02 9.99 22.40 0.22 -5.79 16 22 C 0.50 14.01 7.40 84.82 0.63 14.64 16 23 O -0.61 -22.64 16.64 -5.51 -0.09 -22.73 16 24 C 0.11 2.71 6.53 86.50 0.57 3.28 16 25 C 0.05 1.61 5.47 86.54 0.47 2.08 16 26 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 27 H -0.04 -2.02 8.13 -2.39 -0.02 -2.04 16 28 H 0.00 0.11 7.97 -2.39 -0.02 0.09 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 2.76 7.99 -2.39 -0.02 2.74 16 31 H 0.09 2.68 7.06 -2.38 -0.02 2.67 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.13 2.57 7.24 -2.39 -0.02 2.56 16 34 H 0.17 1.57 7.55 -2.39 -0.02 1.55 16 35 H 0.19 1.18 8.04 -2.91 -0.02 1.15 16 36 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 37 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.12 1.81 6.02 -2.39 -0.01 1.80 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 3.08 6.67 -2.39 -0.02 3.07 16 Total: -1.00 -81.25 347.73 1.59 -79.65 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.02 Total: 8.47 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 6.37 Total: 21.78 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -7.68 Total: -110.89 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.14 Total: -43.29 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -81.25 1.59 -79.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.101 kcal (2) G-P(sol) polarization free energy of solvation -81.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds