Wall clock time and date at job start Fri Apr 10 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31893 * 119.61786 * 2 1 4 4 C 1.31846 * 121.72573 * 180.31211 * 3 2 1 5 5 C 1.38232 * 120.76598 * 359.70556 * 4 3 2 6 6 C 1.38633 * 119.15746 * 359.97438 * 5 4 3 7 7 C 1.38175 * 119.61937 * 179.73182 * 2 1 3 8 8 C 1.50703 * 120.41766 * 359.97438 * 7 2 1 9 9 N 1.46505 * 109.47064 * 79.72339 * 8 7 2 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00541 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99489 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.65022 * 0.02562 * 12 10 9 14 14 C 1.54907 * 104.83213 * 204.09122 * 13 12 10 15 15 C 1.55164 * 101.58446 * 322.99142 * 14 13 12 16 16 O 1.42890 * 110.71986 * 277.13737 * 15 14 13 17 17 C 1.50696 * 110.71840 * 154.03848 * 15 14 13 18 18 H 1.08001 * 120.00613 * 0.02562 * 17 15 14 19 19 C 1.37879 * 120.00005 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99965 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00228 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47122 * 59.99913 * 21 19 17 23 23 H 1.48502 * 109.47030 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46933 * 300.00076 * 21 19 17 25 25 C 1.47027 * 125.64746 * 179.72174 * 12 10 9 26 26 H 1.09002 * 109.47224 * 270.26805 * 1 2 3 27 27 H 1.09003 * 109.47275 * 30.26995 * 1 2 3 28 28 H 1.08999 * 109.46835 * 150.26888 * 1 2 3 29 29 H 1.08007 * 119.61908 * 179.68202 * 4 3 2 30 30 H 1.08004 * 120.42062 * 180.02562 * 5 4 3 31 31 H 1.07997 * 120.78430 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47152 * 319.72423 * 8 7 2 33 33 H 1.09001 * 109.46980 * 199.72523 * 8 7 2 34 34 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 35 35 H 1.08998 * 110.36667 * 322.93436 * 13 12 10 36 36 H 1.09004 * 110.36139 * 85.25503 * 13 12 10 37 37 H 1.08998 * 111.00440 * 81.06555 * 14 13 12 38 38 H 1.09005 * 111.00731 * 204.88087 * 14 13 12 39 39 H 0.96706 * 113.99769 * 179.97438 * 16 15 14 40 40 H 0.96999 * 120.00410 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.87847 * 298.39299 * 25 12 10 42 42 H 1.09000 * 109.88170 * 59.55293 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 -0.0061 5 6 4.2267 0.0342 -0.0067 6 6 3.5766 -1.1903 -0.0002 7 6 2.1899 -1.2012 0.0056 8 6 1.4372 -2.5068 0.0123 9 7 0.9793 -2.8134 -1.3451 10 6 0.2799 -3.9409 -1.5817 11 8 0.0284 -4.7033 -0.6685 12 7 -0.1409 -4.2232 -2.8306 13 6 0.0933 -3.3912 -4.0249 14 6 -1.0458 -3.7722 -5.0032 15 6 -1.1848 -5.2953 -4.7415 16 8 -0.2131 -6.0277 -5.4907 17 6 -2.5770 -5.7681 -5.0717 18 1 -3.3132 -5.0670 -5.4365 19 6 -2.9112 -7.0957 -4.9080 20 7 -2.0150 -7.9494 -4.4633 21 14 -4.6368 -7.6819 -5.3179 22 1 -4.9236 -7.4137 -6.7500 23 1 -4.7393 -9.1402 -5.0566 24 1 -5.6195 -6.9577 -4.4722 25 6 -0.9042 -5.4151 -3.2287 26 1 -0.3634 0.0048 1.0277 27 1 -0.3634 0.8876 -0.5180 28 1 -0.3633 -0.8924 -0.5097 29 1 3.9753 2.1530 -0.0111 30 1 5.3058 0.0804 -0.0113 31 1 4.1368 -2.1136 -0.0001 32 1 0.5768 -2.4267 0.6766 33 1 2.0940 -3.3030 0.3628 34 1 1.1803 -2.2054 -2.0736 35 1 0.0347 -2.3336 -3.7678 36 1 1.0637 -3.6226 -4.4640 37 1 -1.9676 -3.2471 -4.7530 38 1 -0.7556 -3.5775 -6.0357 39 1 -0.2573 -6.9851 -5.3622 40 1 -2.2499 -8.8834 -4.3484 41 1 -0.3201 -6.3134 -3.0280 42 1 -1.8456 -5.4526 -2.6806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602363310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:53 Heat of formation + Delta-G solvation = -41.537452 kcal Electronic energy + Delta-G solvation = -25007.073340 eV Core-core repulsion = 21373.038218 eV Total energy + Delta-G solvation = -3634.035122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.72873 -39.57392 -37.47104 -35.17581 -34.29069 -33.25487 -32.21641 -32.15983 -29.99480 -28.25553 -27.78242 -26.42711 -24.74070 -22.89783 -22.56662 -21.77173 -19.73257 -19.49460 -17.75315 -17.15374 -17.00330 -16.59665 -15.98037 -15.32760 -15.05123 -15.00429 -14.57769 -14.35234 -13.94023 -13.70588 -13.33831 -13.18832 -12.97602 -12.87374 -12.69606 -12.64578 -12.32153 -12.08197 -11.74726 -11.58564 -11.40477 -11.04593 -10.82374 -10.66395 -10.52464 -10.17543 -10.12354 -9.73066 -9.67627 -9.34784 -9.11696 -8.91690 -8.66718 -8.32475 -7.79065 -6.29338 -4.37992 0.73721 0.98641 3.06971 3.23016 3.28308 3.30311 3.56741 3.68845 4.04190 4.26124 4.39565 4.46008 4.55105 4.61655 4.75027 4.98112 5.16180 5.29306 5.36805 5.40910 5.44564 5.50592 5.63514 5.69062 5.79737 5.88391 5.89383 6.01383 6.04241 6.08934 6.42159 6.49632 6.64573 6.71320 6.86647 6.96595 7.23696 7.31425 7.58744 7.71756 7.73566 8.01248 8.48354 8.65188 9.07344 9.30849 9.43422 10.78460 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.003025 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.763336 B = 9254.681581 C = 9274.275700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.148 3.852 3 N -0.488 5.488 4 C 0.106 3.894 5 C -0.183 4.183 6 C -0.053 4.053 7 C -0.157 4.157 8 C 0.186 3.814 9 N -0.749 5.749 10 C 0.716 3.284 11 O -0.596 6.596 12 N -0.628 5.628 13 C 0.103 3.897 14 C -0.116 4.116 15 C 0.249 3.751 16 O -0.587 6.587 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.120 3.880 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.386 0.614 40 H 0.272 0.728 41 H 0.061 0.939 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.119 14.902 6.890 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.010 3.990 3 N -0.197 5.197 4 C -0.051 4.051 5 C -0.203 4.203 6 C -0.079 4.079 7 C -0.159 4.159 8 C 0.062 3.938 9 N -0.406 5.406 10 C 0.418 3.582 11 O -0.475 6.475 12 N -0.365 5.365 13 C -0.020 4.020 14 C -0.154 4.154 15 C 0.209 3.791 16 O -0.397 6.397 17 C -0.576 4.576 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.002 4.002 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.173 0.827 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.228 0.772 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.238 0.762 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.651 15.487 7.500 19.729 hybrid contribution -0.233 -1.401 -0.256 1.443 sum 9.418 14.086 7.244 18.428 Atomic orbital electron populations 1.20861 0.88527 1.04180 1.03513 1.21270 0.97176 0.87595 0.92933 1.67589 1.10039 1.29111 1.12952 1.22798 0.89504 0.98541 0.94265 1.22139 1.01572 0.93338 1.03263 1.21602 0.93605 0.98797 0.93896 1.20804 0.94596 0.96086 1.04410 1.19834 0.97882 0.91835 0.84281 1.45167 1.60860 1.24623 1.09996 1.15492 0.78877 0.81335 0.82521 1.90893 1.63237 1.50315 1.43008 1.47943 1.57592 1.25987 1.04975 1.22237 0.99790 0.93288 0.86682 1.22733 0.96781 0.97716 0.98195 1.19477 0.87653 0.87068 0.84945 1.86068 1.58256 1.24654 1.70728 1.21480 0.96376 0.94346 1.45402 0.91539 1.25078 0.98072 0.96651 0.93462 1.69568 1.34456 1.04271 1.45189 0.86439 0.83703 0.77636 0.79008 1.19995 1.21061 1.20003 1.22914 0.94030 0.84537 0.98686 0.90079 0.90272 0.89842 0.82699 0.84647 0.84480 0.90447 0.90842 0.77241 0.92693 0.92034 0.90543 0.90574 0.76182 0.91827 0.92015 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.44 36.01 0.34 -0.80 16 2 C 0.15 1.63 6.78 -82.59 -0.56 1.07 16 3 N -0.49 -5.47 10.27 -9.47 -0.10 -5.57 16 4 C 0.11 0.94 11.18 -17.55 -0.20 0.74 16 5 C -0.18 -1.44 10.11 -39.44 -0.40 -1.84 16 6 C -0.05 -0.48 9.82 -39.28 -0.39 -0.86 16 7 C -0.16 -1.66 5.26 -104.48 -0.55 -2.21 16 8 C 0.19 2.30 4.94 -5.19 -0.03 2.28 16 9 N -0.75 -10.80 4.83 -66.41 -0.32 -11.12 16 10 C 0.72 14.05 8.49 -86.92 -0.74 13.31 16 11 O -0.60 -13.98 16.67 5.29 0.09 -13.90 16 12 N -0.63 -12.76 3.33 -176.23 -0.59 -13.34 16 13 C 0.10 1.78 6.56 -2.53 -0.02 1.76 16 14 C -0.12 -2.27 6.23 -24.58 -0.15 -2.42 16 15 C 0.25 5.97 0.86 -89.93 -0.08 5.89 16 16 O -0.59 -14.73 13.07 -35.23 -0.46 -15.19 16 17 C -0.54 -13.92 8.12 -34.44 -0.28 -14.20 16 18 H 0.07 1.68 7.76 -52.49 -0.41 1.28 16 19 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 20 N -0.90 -23.74 10.97 55.43 0.61 -23.13 16 21 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.12 2.90 5.54 -3.06 -0.02 2.89 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.90 6.33 -51.93 -0.33 0.57 16 29 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 30 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.08 0.99 7.31 -51.93 -0.38 0.61 16 33 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 34 H 0.39 5.01 6.94 -40.82 -0.28 4.73 16 35 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.39 10.02 6.98 45.56 0.32 10.34 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.06 1.63 8.07 -51.93 -0.42 1.22 16 42 H 0.06 1.68 7.82 -51.93 -0.41 1.27 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -30.75 348.24 -8.91 -39.66 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.21 Total: 14.69 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -3.15 Total: 7.34 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.40 Total: -53.16 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.37 Total: -29.09 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.75 -8.91 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602363310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.880 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds