Wall clock time and date at job start Fri Apr 10 2020 17:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31893 * 119.61786 * 2 1 4 4 C 1.31846 * 121.72573 * 180.31211 * 3 2 1 5 5 C 1.38232 * 120.76598 * 359.70556 * 4 3 2 6 6 C 1.38633 * 119.15746 * 359.97438 * 5 4 3 7 7 C 1.38175 * 119.61937 * 179.73182 * 2 1 3 8 8 C 1.50703 * 120.41766 * 359.97438 * 7 2 1 9 9 N 1.46505 * 109.47064 * 79.72339 * 8 7 2 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00541 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99489 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.65022 * 0.02562 * 12 10 9 14 14 C 1.54907 * 104.83213 * 204.09122 * 13 12 10 15 15 C 1.55164 * 101.58446 * 322.99142 * 14 13 12 16 16 O 1.42890 * 110.71986 * 277.13737 * 15 14 13 17 17 C 1.50696 * 110.71840 * 154.03848 * 15 14 13 18 18 H 1.08001 * 120.00613 * 0.02562 * 17 15 14 19 19 C 1.37879 * 120.00005 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99965 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00228 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47122 * 59.99913 * 21 19 17 23 23 H 1.48502 * 109.47030 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46933 * 300.00076 * 21 19 17 25 25 C 1.47027 * 125.64746 * 179.72174 * 12 10 9 26 26 H 1.09002 * 109.47224 * 270.26805 * 1 2 3 27 27 H 1.09003 * 109.47275 * 30.26995 * 1 2 3 28 28 H 1.08999 * 109.46835 * 150.26888 * 1 2 3 29 29 H 1.08007 * 119.61908 * 179.68202 * 4 3 2 30 30 H 1.08004 * 120.42062 * 180.02562 * 5 4 3 31 31 H 1.07997 * 120.78430 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47152 * 319.72423 * 8 7 2 33 33 H 1.09001 * 109.46980 * 199.72523 * 8 7 2 34 34 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 35 35 H 1.08998 * 110.36667 * 322.93436 * 13 12 10 36 36 H 1.09004 * 110.36139 * 85.25503 * 13 12 10 37 37 H 1.08998 * 111.00440 * 81.06555 * 14 13 12 38 38 H 1.09005 * 111.00731 * 204.88087 * 14 13 12 39 39 H 0.96706 * 113.99769 * 179.97438 * 16 15 14 40 40 H 0.96999 * 120.00410 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.87847 * 298.39299 * 25 12 10 42 42 H 1.09000 * 109.88170 * 59.55293 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 -0.0061 5 6 4.2267 0.0342 -0.0067 6 6 3.5766 -1.1903 -0.0002 7 6 2.1899 -1.2012 0.0056 8 6 1.4372 -2.5068 0.0123 9 7 0.9793 -2.8134 -1.3451 10 6 0.2799 -3.9409 -1.5817 11 8 0.0284 -4.7033 -0.6685 12 7 -0.1409 -4.2232 -2.8306 13 6 0.0933 -3.3912 -4.0249 14 6 -1.0458 -3.7722 -5.0032 15 6 -1.1848 -5.2953 -4.7415 16 8 -0.2131 -6.0277 -5.4907 17 6 -2.5770 -5.7681 -5.0717 18 1 -3.3132 -5.0670 -5.4365 19 6 -2.9112 -7.0957 -4.9080 20 7 -2.0150 -7.9494 -4.4633 21 14 -4.6368 -7.6819 -5.3179 22 1 -4.9236 -7.4137 -6.7500 23 1 -4.7393 -9.1402 -5.0566 24 1 -5.6195 -6.9577 -4.4722 25 6 -0.9042 -5.4151 -3.2287 26 1 -0.3634 0.0048 1.0277 27 1 -0.3634 0.8876 -0.5180 28 1 -0.3633 -0.8924 -0.5097 29 1 3.9753 2.1530 -0.0111 30 1 5.3058 0.0804 -0.0113 31 1 4.1368 -2.1136 -0.0001 32 1 0.5768 -2.4267 0.6766 33 1 2.0940 -3.3030 0.3628 34 1 1.1803 -2.2054 -2.0736 35 1 0.0347 -2.3336 -3.7678 36 1 1.0637 -3.6226 -4.4640 37 1 -1.9676 -3.2471 -4.7530 38 1 -0.7556 -3.5775 -6.0357 39 1 -0.2573 -6.9851 -5.3622 40 1 -2.2499 -8.8834 -4.3484 41 1 -0.3201 -6.3134 -3.0280 42 1 -1.8456 -5.4526 -2.6806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602363310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:52 Heat of formation + Delta-G solvation = -63.633423 kcal Electronic energy + Delta-G solvation = -25008.031493 eV Core-core repulsion = 21373.038218 eV Total energy + Delta-G solvation = -3634.993275 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63009 -40.99920 -39.15682 -36.37200 -36.09480 -34.16103 -33.95786 -33.29653 -31.59530 -29.66529 -28.95177 -27.63417 -26.38156 -24.23954 -23.54721 -22.58914 -21.43811 -21.07108 -19.33240 -18.94843 -17.82696 -17.55752 -17.23665 -16.91328 -16.72858 -16.25441 -15.92317 -15.49083 -15.14021 -15.02944 -14.76391 -14.62820 -14.20676 -14.05726 -13.99122 -13.59991 -13.48015 -13.38145 -13.30119 -13.08671 -12.83025 -12.53912 -12.41806 -12.32176 -12.28590 -12.09291 -11.41416 -11.19184 -10.79170 -10.63026 -10.47420 -10.30773 -10.25364 -9.85478 -9.41999 -8.26342 -6.42192 0.00044 0.28845 1.43403 1.44387 1.52292 1.70078 2.11887 2.38438 2.75994 3.00103 3.12596 3.34869 3.57123 3.80781 3.82770 3.92044 4.08065 4.08548 4.17166 4.36910 4.48452 4.56440 4.60076 4.64531 4.66523 4.69016 4.71673 4.76547 5.03837 5.13114 5.14949 5.20354 5.23593 5.28654 5.36024 5.40259 5.48741 5.74712 5.76294 6.00769 6.13583 6.64278 6.99516 7.02915 7.29792 7.39202 7.52707 8.79738 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.003025 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.763336 B = 9254.681581 C = 9274.275700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.136 3.864 3 N -0.512 5.512 4 C 0.102 3.898 5 C -0.174 4.174 6 C -0.056 4.056 7 C -0.165 4.165 8 C 0.189 3.811 9 N -0.724 5.724 10 C 0.713 3.287 11 O -0.640 6.640 12 N -0.633 5.633 13 C 0.109 3.891 14 C -0.111 4.111 15 C 0.234 3.766 16 O -0.590 6.590 17 C -0.558 4.558 18 H 0.068 0.932 19 C 0.025 3.975 20 N -0.917 5.917 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.139 3.861 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.183 0.817 30 H 0.168 0.832 31 H 0.152 0.848 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.406 0.594 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.026 0.974 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.301 17.189 6.547 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.002 4.002 3 N -0.221 5.221 4 C -0.055 4.055 5 C -0.194 4.194 6 C -0.082 4.082 7 C -0.167 4.167 8 C 0.065 3.935 9 N -0.381 5.381 10 C 0.415 3.585 11 O -0.523 6.523 12 N -0.370 5.370 13 C -0.013 4.013 14 C -0.149 4.149 15 C 0.193 3.807 16 O -0.399 6.399 17 C -0.596 4.596 18 H 0.087 0.913 19 C -0.176 4.176 20 N -0.557 5.557 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.198 1.198 25 C 0.015 3.985 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.200 0.800 30 H 0.185 0.815 31 H 0.169 0.831 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.242 0.758 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.229 0.771 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.864 17.845 7.141 22.079 hybrid contribution -0.509 -2.046 -0.101 2.111 sum 10.354 15.799 7.041 20.159 Atomic orbital electron populations 1.20818 0.88508 1.03685 1.03753 1.21336 0.97458 0.87841 0.93518 1.67611 1.11426 1.29147 1.13956 1.23363 0.88908 1.00263 0.92997 1.22473 1.03135 0.92292 1.01462 1.21866 0.93017 1.00152 0.93201 1.20585 0.95219 0.94700 1.06215 1.19870 0.97832 0.92991 0.82757 1.44977 1.58998 1.22753 1.11415 1.15668 0.79026 0.82133 0.81668 1.90858 1.64934 1.52154 1.44321 1.47862 1.57460 1.25386 1.06278 1.22374 0.99137 0.95017 0.84807 1.22727 0.98218 0.94192 0.99730 1.19698 0.86789 0.89692 0.84476 1.86057 1.58691 1.24161 1.70985 1.21833 0.97515 0.94761 1.45488 0.91339 1.25829 1.01429 0.96926 0.93383 1.69675 1.35922 1.04344 1.45769 0.85509 0.79590 0.77000 0.78956 1.19228 1.20974 1.19819 1.22397 0.92328 0.84956 0.98833 0.89599 0.89986 0.90933 0.79975 0.81483 0.83065 0.91088 0.91081 0.75799 0.88375 0.91236 0.89767 0.89206 0.77101 0.91939 0.95553 0.95012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.44 71.24 0.67 -1.44 16 2 C 0.14 2.79 6.78 42.53 0.29 3.08 16 3 N -0.51 -10.41 10.27 -183.88 -1.89 -12.30 16 4 C 0.10 1.48 11.18 84.69 0.95 2.42 16 5 C -0.17 -2.11 10.11 22.36 0.23 -1.89 16 6 C -0.06 -0.86 9.82 22.47 0.22 -0.64 16 7 C -0.16 -3.21 5.26 -19.77 -0.10 -3.31 16 8 C 0.19 4.54 4.94 85.63 0.42 4.96 16 9 N -0.72 -20.07 4.83 -482.29 -2.33 -22.40 16 10 C 0.71 28.03 8.49 179.05 1.52 29.55 16 11 O -0.64 -30.92 16.67 -3.98 -0.07 -30.99 16 12 N -0.63 -25.66 3.33 -829.73 -2.76 -28.42 16 13 C 0.11 3.50 6.56 86.85 0.57 4.07 16 14 C -0.11 -4.16 6.23 31.99 0.20 -3.96 16 15 C 0.23 11.30 0.86 -10.35 -0.01 11.29 16 16 O -0.59 -29.99 13.07 -148.98 -1.95 -31.94 16 17 C -0.56 -29.16 8.12 25.60 0.21 -28.95 16 18 H 0.07 3.46 7.76 -2.91 -0.02 3.44 16 19 C 0.02 1.31 5.28 84.65 0.45 1.76 16 20 N -0.92 -50.01 10.97 21.45 0.24 -49.77 16 21 Si 0.96 41.98 29.54 68.60 2.03 44.01 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.14 6.93 5.54 86.73 0.48 7.41 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.52 6.33 -2.39 -0.02 1.50 16 29 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.07 1.81 7.31 -2.39 -0.02 1.79 16 33 H 0.07 1.76 8.03 -2.39 -0.02 1.74 16 34 H 0.41 9.38 6.94 -92.71 -0.64 8.74 16 35 H 0.10 2.34 7.30 -2.39 -0.02 2.33 16 36 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.08 3.01 8.03 -2.39 -0.02 2.99 16 38 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 39 H 0.38 20.28 6.98 -74.05 -0.52 19.76 16 40 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 42 H 0.03 1.74 7.82 -2.39 -0.02 1.73 16 Total: -1.00 -68.54 348.24 -0.75 -69.29 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.11 Total: 38.19 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 6.09 Total: 24.35 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -6.74 Total: -112.90 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -2.01 Total: -62.93 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -68.54 -0.75 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602363310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.654 kcal (2) G-P(sol) polarization free energy of solvation -68.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds