Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48508 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47196 * 299.99173 * 3 2 1 6 6 H 1.48497 * 109.47565 * 59.99552 * 3 2 1 7 7 C 1.38815 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00142 * 196.89924 * 7 2 1 9 9 N 1.36935 * 119.99552 * 17.18837 * 7 2 1 10 10 C 1.47072 * 120.88769 * 26.56194 * 9 7 2 11 11 C 1.53689 * 108.28061 * 128.75549 * 10 9 7 12 12 N 1.46908 * 109.25591 * 54.08328 * 11 10 9 13 13 C 1.46899 * 110.99894 * 172.60742 * 12 11 10 14 14 C 1.50702 * 109.47342 * 314.30181 * 13 12 11 15 15 C 1.38200 * 119.53773 * 94.72794 * 14 13 12 16 16 C 1.38947 * 118.91200 * 179.78038 * 15 14 13 17 17 C 1.39314 * 118.56951 * 0.38248 * 16 15 14 18 18 C 1.38401 * 119.04467 * 359.89832 * 17 16 15 19 19 N 1.31892 * 119.53920 * 275.00060 * 14 13 12 20 20 O 1.35942 * 120.72843 * 180.09865 * 17 16 15 21 21 C 1.43236 * 116.56842 * 342.72952 * 20 17 16 22 22 C 1.53455 * 108.37919 * 46.14130 * 21 20 17 23 23 O 1.35639 * 120.39808 * 179.97438 * 16 15 14 24 24 C 1.46895 * 111.26905 * 296.75534 * 12 11 10 25 25 C 1.47082 * 120.87800 * 206.84012 * 9 7 2 26 26 H 0.97002 * 120.00194 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.62781 * 248.52649 * 10 9 7 28 28 H 1.09007 * 109.62956 * 9.10346 * 10 9 7 29 29 H 1.09005 * 109.64961 * 294.08168 * 11 10 9 30 30 H 1.09003 * 109.44801 * 173.96448 * 11 10 9 31 31 H 1.09004 * 109.47377 * 74.30187 * 13 12 11 32 32 H 1.08999 * 109.47061 * 194.30357 * 13 12 11 33 33 H 1.07998 * 120.53877 * 0.02562 * 15 14 13 34 34 H 1.08002 * 119.72175 * 179.87981 * 18 17 16 35 35 H 1.09000 * 109.68203 * 286.41934 * 21 20 17 36 36 H 1.08994 * 109.71984 * 165.88231 * 21 20 17 37 37 H 1.08994 * 109.69591 * 180.61621 * 22 21 20 38 38 H 1.09003 * 109.72933 * 60.04539 * 22 21 20 39 39 H 1.08994 * 109.49506 * 303.14713 * 24 12 11 40 40 H 1.08997 * 109.49438 * 183.06292 * 24 12 11 41 41 H 1.09003 * 109.62976 * 350.89624 * 25 9 7 42 42 H 1.09001 * 109.62615 * 111.27813 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2223 0.2724 9 7 1.3713 -2.3617 -0.3494 10 6 0.2077 -2.3408 -1.2486 11 6 0.4533 -3.3532 -2.3785 12 7 0.7628 -4.6653 -1.7945 13 6 0.8322 -5.7009 -2.8340 14 6 -0.3436 -5.5572 -3.7657 15 6 -0.2030 -4.8309 -4.9330 16 6 -1.2941 -4.7106 -5.7848 17 6 -2.4924 -5.3221 -5.4230 18 6 -2.5546 -6.0274 -4.2338 19 7 -1.4938 -6.1217 -3.4530 20 8 -3.5869 -5.2342 -6.2245 21 6 -3.5711 -4.2041 -7.2196 22 6 -2.2069 -4.2304 -7.9218 23 8 -1.1899 -4.0043 -6.9381 24 6 2.0052 -4.6206 -1.0121 25 6 1.8269 -3.6606 0.1689 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6889 -2.6171 -0.6937 28 1 0.0880 -1.3424 -1.6695 29 1 1.2909 -3.0216 -2.9922 30 1 -0.4414 -3.4319 -2.9961 31 1 1.7583 -5.5885 -3.3977 32 1 0.8079 -6.6859 -2.3677 33 1 0.7406 -4.3678 -5.1810 34 1 -3.4786 -6.5042 -3.9417 35 1 -3.7216 -3.2339 -6.7461 36 1 -4.3621 -4.3838 -7.9476 37 1 -2.1675 -3.4461 -8.6776 38 1 -2.0538 -5.2018 -8.3921 39 1 2.8211 -4.2713 -1.6448 40 1 2.2358 -5.6182 -0.6384 41 1 2.7784 -3.5353 0.6858 42 1 1.0846 -4.0597 0.8601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602456482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = -15.254819 kcal Electronic energy + Delta-G solvation = -25463.356517 eV Core-core repulsion = 21830.461096 eV Total energy + Delta-G solvation = -3632.895422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61296 -40.48826 -39.19923 -38.43730 -36.26790 -33.67007 -33.10606 -32.15179 -31.58393 -30.25307 -28.84624 -26.87946 -25.53466 -24.67212 -24.23883 -23.81030 -21.69740 -20.81077 -19.80079 -18.91484 -18.69038 -18.29470 -17.15347 -16.75694 -16.46302 -16.28912 -15.93587 -15.87154 -15.58297 -15.43197 -15.34165 -15.21711 -15.00693 -14.69332 -14.57444 -14.18475 -13.42649 -13.21744 -13.03988 -12.94310 -12.79663 -12.64115 -12.30779 -12.11078 -12.05011 -11.92710 -11.74905 -11.61264 -11.43756 -10.67080 -10.60286 -10.10836 -9.49067 -9.19510 -8.68856 -7.87902 -5.33266 -0.07919 0.11217 1.45735 1.46763 1.58172 1.84436 2.10638 2.49949 2.53600 3.05588 3.16841 3.26629 3.28519 3.50698 3.67734 3.80019 3.88101 3.94859 4.07697 4.25223 4.31357 4.35195 4.41875 4.51198 4.52223 4.56102 4.64918 4.65606 4.69448 4.80575 4.88452 4.89704 5.05543 5.18207 5.23448 5.35960 5.61102 5.63680 5.68464 6.14239 6.15884 6.23039 6.36791 6.94305 7.11882 7.82885 8.38241 9.19379 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.003880 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.473338 B = 7214.165402 C = 8178.754603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.263 4.263 8 H 0.072 0.928 9 N -0.614 5.614 10 C 0.190 3.810 11 C 0.058 3.942 12 N -0.536 5.536 13 C 0.110 3.890 14 C 0.131 3.869 15 C -0.168 4.168 16 C 0.086 3.914 17 C -0.009 4.009 18 C 0.104 3.896 19 N -0.472 5.472 20 O -0.309 6.309 21 C 0.012 3.988 22 C 0.012 3.988 23 O -0.317 6.317 24 C 0.056 3.944 25 C 0.143 3.857 26 H 0.249 0.751 27 H -0.010 1.010 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.148 0.852 34 H 0.186 0.814 35 H 0.075 0.925 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.090 0.910 39 H 0.033 0.967 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 -12.608 -18.110 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.393 4.393 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.064 3.936 11 C -0.071 4.071 12 N -0.262 5.262 13 C -0.017 4.017 14 C -0.006 4.006 15 C -0.189 4.189 16 C 0.033 3.967 17 C -0.057 4.057 18 C -0.054 4.054 19 N -0.185 5.185 20 O -0.222 6.222 21 C -0.063 4.063 22 C -0.062 4.062 23 O -0.230 6.230 24 C -0.073 4.073 25 C 0.017 3.983 26 H 0.058 0.942 27 H 0.008 0.992 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.166 0.834 34 H 0.203 0.797 35 H 0.093 0.907 36 H 0.181 0.819 37 H 0.175 0.825 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -4.557 -13.027 -17.103 21.977 hybrid contribution 0.588 1.993 -1.217 2.409 sum -3.970 -11.033 -18.320 21.751 Atomic orbital electron populations 1.70219 1.06870 1.25766 1.55703 1.25836 0.96021 1.01657 1.01314 0.85177 0.78698 0.79646 0.76760 1.18785 1.21719 1.21869 1.19621 0.93024 0.85909 1.40710 0.91044 1.44439 1.34284 1.02445 1.52617 1.20626 0.87804 0.96049 0.89145 1.22594 0.98543 0.89584 0.96377 1.61992 1.35442 1.04854 1.23867 1.21035 0.92525 0.97287 0.90883 1.20972 0.93869 0.93256 0.92526 1.21455 0.99106 1.02802 0.95586 1.19143 0.93195 0.95640 0.88771 1.20030 0.86659 1.03865 0.95150 1.22568 0.98377 0.97296 0.87124 1.67607 0.99140 1.20818 1.30918 1.86279 1.36240 1.53803 1.45897 1.24030 1.00160 0.90920 0.91201 1.24116 0.85834 1.06380 0.89846 1.86258 1.51243 1.61248 1.24230 1.22515 0.89009 1.00422 0.95327 1.21159 0.97622 0.85378 0.94102 0.94153 0.99162 0.92776 0.95723 0.92237 0.91693 0.87736 0.83386 0.79674 0.90682 0.81901 0.82545 0.89134 0.94911 0.88036 0.91576 0.96844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.78 11.16 21.65 0.24 -57.54 16 2 C -0.05 -3.07 4.93 84.86 0.42 -2.65 16 3 Si 0.97 45.77 29.59 68.60 2.03 47.80 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.26 -14.90 9.63 84.03 0.81 -14.09 16 8 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 9 N -0.61 -32.57 3.03 -697.26 -2.11 -34.68 16 10 C 0.19 10.00 5.45 86.50 0.47 10.47 16 11 C 0.06 2.44 4.88 86.53 0.42 2.87 16 12 N -0.54 -19.53 4.77 -898.88 -4.29 -23.82 16 13 C 0.11 3.16 5.59 85.56 0.48 3.64 16 14 C 0.13 3.95 4.83 42.54 0.21 4.16 16 15 C -0.17 -4.79 8.14 22.43 0.18 -4.60 16 16 C 0.09 2.33 6.52 22.70 0.15 2.47 16 17 C -0.01 -0.23 6.51 22.57 0.15 -0.09 16 18 C 0.10 2.81 11.14 84.70 0.94 3.75 16 19 N -0.47 -14.67 10.26 -183.60 -1.88 -16.55 16 20 O -0.31 -6.59 10.45 -80.93 -0.85 -7.44 16 21 C 0.01 0.15 7.25 72.13 0.52 0.68 16 22 C 0.01 0.16 7.26 72.13 0.52 0.68 16 23 O -0.32 -7.44 10.44 -77.56 -0.81 -8.25 16 24 C 0.06 1.93 5.58 86.38 0.48 2.42 16 25 C 0.14 6.19 6.69 86.35 0.58 6.76 16 26 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.05 3.17 6.12 -2.38 -0.01 3.15 16 29 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.06 2.45 5.73 -2.39 -0.01 2.44 16 31 H 0.07 1.62 7.98 -2.38 -0.02 1.60 16 32 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 34 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.10 2.79 8.11 -2.39 -0.02 2.78 16 41 H 0.07 2.68 7.95 -2.39 -0.02 2.66 16 42 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -73.66 336.89 -0.32 -73.98 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.02 Total: 10.03 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 6.33 Total: 16.47 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -8.04 Total: -132.60 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -1.66 Total: -15.69 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -73.66 -0.32 -73.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602456482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.725 kcal (2) G-P(sol) polarization free energy of solvation -73.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds