Wall clock time and date at job start Fri Apr 10 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34870 * 120.32834 * 2 1 4 4 N 1.35585 * 121.80113 * 179.72277 * 3 2 1 5 5 H 0.96999 * 118.80580 * 180.25311 * 4 3 2 6 6 C 1.34350 * 122.38540 * 0.53305 * 4 3 2 7 7 C 1.37995 * 120.37183 * 359.46813 * 6 4 3 8 8 C 1.47281 * 120.87735 * 180.28105 * 7 6 4 9 9 O 1.21624 * 120.00010 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00351 * 0.02562 * 8 7 6 11 11 C 1.46502 * 120.00147 * 180.02562 * 10 8 7 12 12 C 1.53039 * 109.45794 * 275.06890 * 11 10 8 13 13 C 1.53193 * 109.31282 * 178.61249 * 12 11 10 14 14 N 1.46930 * 108.77337 * 54.63153 * 13 12 11 15 15 C 1.36945 * 120.62612 * 126.41224 * 14 13 12 16 16 H 1.07993 * 120.00383 * 331.82797 * 15 14 13 17 17 C 1.38813 * 119.99628 * 151.82576 * 15 14 13 18 18 N 1.31615 * 120.00279 * 343.07474 * 17 15 14 19 19 Si 1.86801 * 120.00010 * 163.06656 * 17 15 14 20 20 H 1.48501 * 109.46859 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46703 * 120.00027 * 19 17 15 22 22 H 1.48493 * 109.47637 * 240.00414 * 19 17 15 23 23 C 1.46917 * 118.74399 * 306.39216 * 14 13 12 24 24 C 1.53043 * 109.46380 * 154.99689 * 11 10 8 25 25 C 1.41670 * 120.33576 * 179.97438 * 2 1 3 26 26 O 1.22088 * 121.06485 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47022 * 270.02171 * 1 2 3 28 28 H 1.08998 * 109.47218 * 30.02456 * 1 2 3 29 29 H 1.08999 * 109.46906 * 150.03173 * 1 2 3 30 30 H 1.08005 * 119.09939 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.81061 * 179.75399 * 6 4 3 32 32 H 0.97001 * 120.00200 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.45806 * 35.02350 * 11 10 8 34 34 H 1.08995 * 109.49924 * 298.56242 * 12 11 10 35 35 H 1.08998 * 109.50095 * 58.65988 * 12 11 10 36 36 H 1.08999 * 109.58739 * 294.84522 * 13 12 11 37 37 H 1.09003 * 109.70519 * 174.48805 * 13 12 11 38 38 H 0.97005 * 120.00258 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.58513 * 293.82299 * 23 14 13 40 40 H 1.08994 * 109.70900 * 173.46305 * 23 14 13 41 41 H 1.08991 * 109.49472 * 301.34002 * 24 11 10 42 42 H 1.09001 * 109.49361 * 61.43415 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1881 1.1641 0.0000 4 7 3.5434 1.1990 0.0056 5 1 3.9888 2.0607 0.0091 6 6 4.2920 0.0833 0.0009 7 6 3.6921 -1.1594 0.0010 8 6 4.5019 -2.3896 0.0021 9 8 3.9564 -3.4767 0.0018 10 7 5.8473 -2.3108 0.0035 11 6 6.6528 -3.5346 0.0040 12 6 6.8251 -4.0308 1.4414 13 6 7.6383 -5.3291 1.4350 14 7 8.9014 -5.0925 0.7227 15 6 10.1011 -5.3903 1.3121 16 1 10.1967 -5.3604 2.3874 17 6 11.1943 -5.7306 0.5273 18 7 11.0178 -6.0921 -0.7259 19 14 12.9161 -5.6754 1.2497 20 1 12.8441 -5.2410 2.6679 21 1 13.5270 -7.0269 1.1768 22 1 13.7458 -4.7148 0.4789 23 6 8.8529 -4.5307 -0.6340 24 6 8.0261 -3.2414 -0.6045 25 6 2.2225 -1.2227 0.0005 26 8 1.6381 -2.2946 0.0006 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5133 30 1 1.6387 2.0940 -0.0004 31 1 5.3693 0.1596 0.0016 32 1 6.2824 -1.4439 0.0034 33 1 6.1499 -4.3005 -0.5866 34 1 7.3500 -3.2757 2.0265 35 1 5.8457 -4.2172 1.8819 36 1 7.0737 -6.1114 0.9278 37 1 7.8486 -5.6361 2.4596 38 1 11.7818 -6.3296 -1.2745 39 1 8.3874 -5.2479 -1.3100 40 1 9.8636 -4.3088 -0.9762 41 1 7.9013 -2.8658 -1.6200 42 1 8.5396 -2.4936 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611591436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:01 Heat of formation + Delta-G solvation = -19.575233 kcal Electronic energy + Delta-G solvation = -24803.385832 eV Core-core repulsion = 21170.303063 eV Total energy + Delta-G solvation = -3633.082769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16830 -39.24846 -37.87652 -37.06517 -34.31268 -33.68256 -32.41717 -31.36928 -30.00797 -29.19154 -27.68078 -25.31741 -23.98183 -23.19085 -22.21621 -21.81225 -20.20197 -19.56519 -18.89017 -17.73239 -17.12787 -16.56848 -16.12996 -15.53351 -15.41542 -14.77230 -14.38909 -14.25147 -13.95446 -13.66611 -13.49830 -13.47341 -13.23834 -12.97098 -12.85397 -12.76459 -12.49187 -12.29264 -12.18379 -11.41816 -11.10666 -10.81392 -10.71834 -10.44508 -10.22777 -10.00045 -9.90545 -9.80690 -9.72157 -9.55092 -9.14817 -8.63960 -8.44013 -8.17734 -6.65555 -5.77641 -3.19697 0.61632 1.06819 2.38532 3.04530 3.35128 3.38752 3.45230 3.47548 3.81998 3.92982 4.28215 4.50793 4.56990 4.57765 4.94958 5.21258 5.24673 5.37158 5.43476 5.48838 5.55642 5.60021 5.65720 5.91417 5.94082 6.04469 6.12475 6.33086 6.35267 6.39201 6.48409 6.56502 6.64717 6.65667 6.85639 7.00584 7.05709 7.34374 7.63166 7.80231 7.84996 8.02098 8.46642 8.60666 9.22929 9.86254 10.43762 11.31274 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.035498 B = 0.002806 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.578308 B = 9977.769633 C =10338.216228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.234 4.234 3 C 0.115 3.885 4 N -0.580 5.580 5 H 0.423 0.577 6 C 0.166 3.834 7 C -0.293 4.293 8 C 0.566 3.434 9 O -0.511 6.511 10 N -0.729 5.729 11 C 0.153 3.847 12 C -0.139 4.139 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.174 3.826 24 C -0.145 4.145 25 C 0.408 3.592 26 O -0.471 6.471 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.386 0.614 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.021 0.979 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 22.674 0.145 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.240 4.240 3 C -0.010 4.010 4 N -0.185 5.185 5 H 0.258 0.742 6 C 0.034 3.966 7 C -0.305 4.305 8 C 0.353 3.647 9 O -0.386 6.386 10 N -0.381 5.381 11 C 0.050 3.950 12 C -0.179 4.179 13 C 0.020 3.980 14 N -0.316 5.316 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.048 3.952 24 C -0.185 4.185 25 C 0.293 3.707 26 O -0.350 6.350 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.182 0.818 31 H 0.185 0.815 32 H 0.220 0.780 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.399 21.177 0.040 26.184 hybrid contribution 1.521 1.057 0.295 1.875 sum -13.878 22.234 0.335 26.212 Atomic orbital electron populations 1.20390 0.88869 1.02999 1.02427 1.21166 0.98381 0.93447 1.11018 1.21499 0.82448 1.00098 0.96965 1.40655 1.05897 1.09392 1.62534 0.74153 1.22254 0.97077 0.85799 0.91429 1.22596 0.97374 0.92360 1.18133 1.17500 0.81752 0.88166 0.77321 1.90861 1.71397 1.28328 1.47994 1.46258 1.05592 1.09932 1.76300 1.21018 0.90938 0.85598 0.97458 1.22368 0.99707 1.00073 0.95757 1.20884 0.87596 0.92911 0.96606 1.44110 1.00839 1.72118 1.14535 1.19241 0.86903 1.40258 0.91556 0.91611 1.25059 0.98888 0.99204 0.96630 1.70039 1.29283 1.47875 1.07586 0.86231 0.84812 0.77287 0.78497 1.20293 1.21737 1.21628 1.20731 0.99244 0.88924 0.86332 1.22529 0.94713 1.02370 0.98921 1.18094 0.86824 0.89159 0.76634 1.90824 1.71171 1.31759 1.41253 0.91317 0.91800 0.90539 0.81822 0.81460 0.78036 0.89939 0.92464 0.92606 0.96099 0.92583 0.93681 0.96088 0.89073 0.92799 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.83 36.01 0.35 -0.36 16 2 C -0.23 -2.22 5.89 -104.51 -0.62 -2.83 16 3 C 0.11 0.53 10.73 -17.09 -0.18 0.35 16 4 N -0.58 -1.90 5.16 -12.73 -0.07 -1.97 16 5 H 0.42 -0.46 8.88 -40.82 -0.36 -0.82 16 6 C 0.17 1.09 10.74 -16.54 -0.18 0.91 16 7 C -0.29 -3.80 6.05 -102.72 -0.62 -4.43 16 8 C 0.57 9.59 7.74 -12.59 -0.10 9.49 16 9 O -0.51 -11.47 15.24 -14.76 -0.22 -11.70 16 10 N -0.73 -10.54 5.03 -54.88 -0.28 -10.82 16 11 C 0.15 2.77 2.41 -67.89 -0.16 2.61 16 12 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 13 C 0.15 3.27 6.52 -3.71 -0.02 3.25 16 14 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 15 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 17 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 18 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 19 Si 0.90 21.56 29.59 -169.99 -5.03 16.54 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.17 4.12 5.30 -3.72 -0.02 4.10 16 24 C -0.15 -2.65 5.55 -26.61 -0.15 -2.80 16 25 C 0.41 6.09 6.95 -34.68 -0.24 5.85 16 26 O -0.47 -9.44 15.63 -15.18 -0.24 -9.67 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.08 0.78 7.68 -51.93 -0.40 0.38 16 30 H 0.16 0.07 8.06 -52.48 -0.42 -0.35 16 31 H 0.17 0.53 6.42 -52.48 -0.34 0.19 16 32 H 0.39 3.97 6.68 -40.82 -0.27 3.69 16 33 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -39.96 344.57 -8.69 -48.65 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.84 Total: -1.33 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.32 Total: 6.24 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.24 Total: -53.92 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.46 Total: -21.37 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.96 -8.69 -48.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611591436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.079 kcal (2) G-P(sol) polarization free energy of solvation -39.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds