Wall clock time and date at job start Fri Apr 10 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34870 * 120.32834 * 2 1 4 4 N 1.35585 * 121.80113 * 179.72277 * 3 2 1 5 5 H 0.96999 * 118.80580 * 180.25311 * 4 3 2 6 6 C 1.34350 * 122.38540 * 0.53305 * 4 3 2 7 7 C 1.37995 * 120.37183 * 359.46813 * 6 4 3 8 8 C 1.47281 * 120.87735 * 180.28105 * 7 6 4 9 9 O 1.21624 * 120.00010 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00351 * 0.02562 * 8 7 6 11 11 C 1.46502 * 120.00147 * 180.02562 * 10 8 7 12 12 C 1.53039 * 109.45794 * 275.06890 * 11 10 8 13 13 C 1.53193 * 109.31282 * 178.61249 * 12 11 10 14 14 N 1.46930 * 108.77337 * 54.63153 * 13 12 11 15 15 C 1.36945 * 120.62612 * 126.41224 * 14 13 12 16 16 H 1.07993 * 120.00383 * 331.82797 * 15 14 13 17 17 C 1.38813 * 119.99628 * 151.82576 * 15 14 13 18 18 N 1.31615 * 120.00279 * 343.07474 * 17 15 14 19 19 Si 1.86801 * 120.00010 * 163.06656 * 17 15 14 20 20 H 1.48501 * 109.46859 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46703 * 120.00027 * 19 17 15 22 22 H 1.48493 * 109.47637 * 240.00414 * 19 17 15 23 23 C 1.46917 * 118.74399 * 306.39216 * 14 13 12 24 24 C 1.53043 * 109.46380 * 154.99689 * 11 10 8 25 25 C 1.41670 * 120.33576 * 179.97438 * 2 1 3 26 26 O 1.22088 * 121.06485 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47022 * 270.02171 * 1 2 3 28 28 H 1.08998 * 109.47218 * 30.02456 * 1 2 3 29 29 H 1.08999 * 109.46906 * 150.03173 * 1 2 3 30 30 H 1.08005 * 119.09939 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.81061 * 179.75399 * 6 4 3 32 32 H 0.97001 * 120.00200 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.45806 * 35.02350 * 11 10 8 34 34 H 1.08995 * 109.49924 * 298.56242 * 12 11 10 35 35 H 1.08998 * 109.50095 * 58.65988 * 12 11 10 36 36 H 1.08999 * 109.58739 * 294.84522 * 13 12 11 37 37 H 1.09003 * 109.70519 * 174.48805 * 13 12 11 38 38 H 0.97005 * 120.00258 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.58513 * 293.82299 * 23 14 13 40 40 H 1.08994 * 109.70900 * 173.46305 * 23 14 13 41 41 H 1.08991 * 109.49472 * 301.34002 * 24 11 10 42 42 H 1.09001 * 109.49361 * 61.43415 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1881 1.1641 0.0000 4 7 3.5434 1.1990 0.0056 5 1 3.9888 2.0607 0.0091 6 6 4.2920 0.0833 0.0009 7 6 3.6921 -1.1594 0.0010 8 6 4.5019 -2.3896 0.0021 9 8 3.9564 -3.4767 0.0018 10 7 5.8473 -2.3108 0.0035 11 6 6.6528 -3.5346 0.0040 12 6 6.8251 -4.0308 1.4414 13 6 7.6383 -5.3291 1.4350 14 7 8.9014 -5.0925 0.7227 15 6 10.1011 -5.3903 1.3121 16 1 10.1967 -5.3604 2.3874 17 6 11.1943 -5.7306 0.5273 18 7 11.0178 -6.0921 -0.7259 19 14 12.9161 -5.6754 1.2497 20 1 12.8441 -5.2410 2.6679 21 1 13.5270 -7.0269 1.1768 22 1 13.7458 -4.7148 0.4789 23 6 8.8529 -4.5307 -0.6340 24 6 8.0261 -3.2414 -0.6045 25 6 2.2225 -1.2227 0.0005 26 8 1.6381 -2.2946 0.0006 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5133 30 1 1.6387 2.0940 -0.0004 31 1 5.3693 0.1596 0.0016 32 1 6.2824 -1.4439 0.0034 33 1 6.1499 -4.3005 -0.5866 34 1 7.3500 -3.2757 2.0265 35 1 5.8457 -4.2172 1.8819 36 1 7.0737 -6.1114 0.9278 37 1 7.8486 -5.6361 2.4596 38 1 11.7818 -6.3296 -1.2745 39 1 8.3874 -5.2479 -1.3100 40 1 9.8636 -4.3088 -0.9762 41 1 7.9013 -2.8658 -1.6200 42 1 8.5396 -2.4936 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611591436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:01 Heat of formation + Delta-G solvation = -50.260914 kcal Electronic energy + Delta-G solvation = -24804.716463 eV Core-core repulsion = 21170.303063 eV Total energy + Delta-G solvation = -3634.413400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94066 -40.53430 -38.97441 -38.56061 -35.95095 -34.47646 -33.93643 -32.65428 -31.67154 -30.86904 -28.28819 -27.07825 -25.21012 -23.96962 -23.86272 -23.39816 -21.44481 -21.02634 -19.77948 -18.78077 -18.52673 -17.70471 -17.16188 -16.96658 -16.60822 -16.39976 -15.69430 -15.48755 -15.37186 -15.21964 -14.80718 -14.51640 -14.25400 -14.17554 -14.11876 -14.08862 -13.63757 -13.39969 -13.20972 -13.01996 -12.83742 -12.62073 -12.51759 -12.21320 -11.99357 -11.87976 -11.55291 -11.36695 -11.07807 -10.56911 -10.48323 -10.25777 -9.99028 -9.01022 -8.71525 -7.87445 -5.34000 -0.13329 0.44327 1.48523 1.50298 1.61568 1.92149 1.95193 2.17741 2.52500 2.83991 3.28173 3.38094 3.64095 3.76320 3.89252 3.93797 3.99581 4.05285 4.31916 4.33213 4.44629 4.50018 4.63712 4.73322 4.81847 4.85525 4.86504 4.93289 5.04141 5.05950 5.15421 5.26508 5.29676 5.42051 5.46499 5.57465 5.65019 5.70911 5.72146 6.21099 6.38856 6.71587 7.14300 7.15231 7.43201 7.82938 8.37209 9.20004 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.035498 B = 0.002806 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.578308 B = 9977.769633 C =10338.216228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.275 4.275 3 C 0.163 3.837 4 N -0.544 5.544 5 H 0.455 0.545 6 C 0.227 3.773 7 C -0.357 4.357 8 C 0.563 3.437 9 O -0.585 6.585 10 N -0.707 5.707 11 C 0.163 3.837 12 C -0.123 4.123 13 C 0.144 3.856 14 N -0.608 5.608 15 C -0.263 4.263 16 H 0.068 0.932 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.296 1.296 22 H -0.285 1.285 23 C 0.177 3.823 24 C -0.124 4.124 25 C 0.380 3.620 26 O -0.563 6.563 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.035 0.965 30 H 0.229 0.771 31 H 0.216 0.784 32 H 0.412 0.588 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.048 0.952 36 H -0.001 1.001 37 H 0.058 0.942 38 H 0.251 0.749 39 H -0.012 1.012 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.521 29.002 0.878 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.280 4.280 3 C 0.037 3.963 4 N -0.149 5.149 5 H 0.299 0.701 6 C 0.091 3.909 7 C -0.368 4.368 8 C 0.353 3.647 9 O -0.465 6.465 10 N -0.361 5.361 11 C 0.058 3.942 12 C -0.163 4.163 13 C 0.018 3.982 14 N -0.331 5.331 15 C -0.393 4.393 16 H 0.086 0.914 17 C -0.246 4.246 18 N -0.583 5.583 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.224 1.224 22 H -0.211 1.211 23 C 0.051 3.949 24 C -0.164 4.164 25 C 0.272 3.728 26 O -0.451 6.451 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.055 0.945 30 H 0.245 0.755 31 H 0.232 0.768 32 H 0.250 0.750 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.017 0.983 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.006 0.994 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.122 27.668 0.786 31.074 hybrid contribution 1.147 -0.736 0.060 1.364 sum -12.976 26.933 0.846 29.907 Atomic orbital electron populations 1.20361 0.88517 1.02986 1.02426 1.21103 0.99114 0.92953 1.14858 1.22228 0.82699 1.00451 0.90921 1.40986 1.05849 1.10115 1.57981 0.70142 1.22654 0.99006 0.84201 0.85086 1.22096 0.96306 0.93133 1.25252 1.18157 0.82138 0.88810 0.75589 1.90823 1.72720 1.31431 1.51491 1.45804 1.04737 1.09799 1.75741 1.20603 0.91020 0.86495 0.96083 1.22152 0.98688 0.98674 0.96770 1.20948 0.86917 0.94264 0.96075 1.44367 1.01151 1.72591 1.15032 1.19570 0.87855 1.39968 0.91898 0.91399 1.25864 1.02608 0.99115 0.97027 1.70207 1.30132 1.49044 1.08947 0.85143 0.79802 0.76768 0.78304 1.18979 1.22353 1.21103 1.20583 0.98552 0.90705 0.85041 1.22239 0.93480 0.99642 1.00998 1.19016 0.88230 0.90094 0.75439 1.90772 1.72692 1.34757 1.46868 0.91441 0.87701 0.94544 0.75517 0.76760 0.74970 0.93707 0.90612 0.93333 0.98304 0.92342 0.93981 0.99393 0.91425 0.90189 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.83 71.24 0.70 -0.62 16 2 C -0.27 -4.74 5.89 -19.79 -0.12 -4.86 16 3 C 0.16 0.47 10.73 83.34 0.89 1.36 16 4 N -0.54 0.58 5.16 -194.20 -1.00 -0.42 16 5 H 0.46 -5.42 8.88 -92.71 -0.82 -6.24 16 6 C 0.23 1.70 10.74 84.25 0.90 2.61 16 7 C -0.36 -8.95 6.05 -18.63 -0.11 -9.07 16 8 C 0.56 19.63 7.74 86.62 0.67 20.30 16 9 O -0.58 -28.76 15.24 15.03 0.23 -28.53 16 10 N -0.71 -19.45 5.03 -445.80 -2.24 -21.69 16 11 C 0.16 5.93 2.41 45.02 0.11 6.04 16 12 C -0.12 -4.73 5.65 30.67 0.17 -4.56 16 13 C 0.14 6.67 6.52 86.36 0.56 7.23 16 14 N -0.61 -31.47 2.99 -699.11 -2.09 -33.56 16 15 C -0.26 -14.58 9.58 84.03 0.81 -13.77 16 16 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 17 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 18 N -0.94 -55.75 11.19 21.65 0.24 -55.51 16 19 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 C 0.18 8.61 5.30 86.36 0.46 9.07 16 24 C -0.12 -4.36 5.55 30.67 0.17 -4.19 16 25 C 0.38 11.94 6.95 25.44 0.18 12.12 16 26 O -0.56 -25.59 15.63 13.53 0.21 -25.37 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.10 0.65 8.08 -2.39 -0.02 0.63 16 29 H 0.04 0.84 7.68 -2.39 -0.02 0.82 16 30 H 0.23 -1.97 8.06 -2.91 -0.02 -2.00 16 31 H 0.22 -0.37 6.42 -2.91 -0.02 -0.39 16 32 H 0.41 6.64 6.68 -92.71 -0.62 6.02 16 33 H 0.04 1.99 7.58 -2.38 -0.02 1.98 16 34 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.06 2.61 7.93 -2.39 -0.02 2.59 16 38 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 39 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 41 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -104.10 344.57 2.80 -101.30 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -0.38 Total: -1.87 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 5.81 Total: 19.22 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -5.10 Total: -111.19 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: 0.44 Total: -53.90 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -104.10 2.80 -101.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611591436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.037 kcal (2) G-P(sol) polarization free energy of solvation -104.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds