Wall clock time and date at job start Fri Apr 10 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.46678 * 2 1 4 4 C 1.46905 * 111.00468 * 60.00436 * 3 2 1 5 5 C 1.50696 * 109.47332 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00409 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99776 * 179.97438 * 5 4 3 8 8 C 1.46504 * 120.00119 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.47090 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00482 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99970 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99923 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00172 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46997 * 90.00600 * 13 11 9 15 15 H 1.48499 * 109.47242 * 210.00148 * 13 11 9 16 16 H 1.48499 * 109.47176 * 330.00096 * 13 11 9 17 17 C 1.50698 * 109.47086 * 119.99996 * 2 1 3 18 18 N 1.34777 * 119.99538 * 204.99721 * 17 2 1 19 19 O 1.21283 * 120.00472 * 25.00384 * 17 2 1 20 20 C 1.50695 * 109.46992 * 240.00131 * 2 1 3 21 21 C 1.38234 * 120.00002 * 119.72358 * 20 2 1 22 22 C 1.38234 * 120.00162 * 179.81238 * 21 20 2 23 23 C 1.38234 * 120.00023 * 0.39380 * 22 21 20 24 24 C 1.38235 * 119.99655 * 359.86292 * 23 22 21 25 25 C 1.38234 * 119.99962 * 299.99952 * 20 2 1 26 26 H 1.09006 * 109.47121 * 299.99526 * 1 2 3 27 27 H 1.08990 * 109.47497 * 59.99919 * 1 2 3 28 28 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.00901 * 110.99915 * 183.95163 * 3 2 1 30 30 H 1.09002 * 109.46706 * 299.99735 * 4 3 2 31 31 H 1.09002 * 109.47062 * 59.99281 * 4 3 2 32 32 H 0.97008 * 120.00154 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.46991 * 299.99957 * 8 7 5 34 34 H 1.08997 * 109.46930 * 60.00094 * 8 7 5 35 35 H 0.96998 * 119.99720 * 179.97438 * 12 11 9 36 36 H 0.97001 * 120.00485 * 0.02562 * 18 17 2 37 37 H 0.97005 * 119.99790 * 179.72635 * 18 17 2 38 38 H 1.08005 * 120.00221 * 359.97438 * 21 20 2 39 39 H 1.08006 * 120.00112 * 180.23473 * 22 21 20 40 40 H 1.07995 * 120.00043 * 179.83544 * 23 22 21 41 41 H 1.08003 * 119.99978 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00361 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1099 1.1877 5 6 2.0702 3.5234 1.1532 6 8 2.7661 3.8906 0.2303 7 7 1.7632 4.3794 2.1479 8 6 2.2698 5.7536 2.1141 9 6 1.7867 6.4971 3.3326 10 1 1.1642 5.9963 4.0594 11 6 2.1393 7.8168 3.5197 12 7 2.8969 8.4270 2.6345 13 14 1.5400 8.7387 5.0298 14 1 2.5239 8.5785 6.1304 15 1 1.3925 10.1800 4.7037 16 1 0.2271 8.1908 5.4556 17 6 2.0324 -0.7104 1.2305 18 7 3.2544 -0.4245 1.7218 19 8 1.3371 -1.5394 1.7785 20 6 2.0323 -0.7104 -1.2304 21 6 2.8223 -0.0369 -2.1433 22 6 3.2863 -0.6896 -3.2700 23 6 2.9536 -2.0134 -3.4881 24 6 2.1592 -2.6854 -2.5780 25 6 1.6984 -2.0338 -1.4492 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.0261 1.4127 -0.0649 30 1 0.4588 2.1245 1.1960 31 1 1.9121 1.6107 2.0860 32 1 1.2063 4.0858 2.8859 33 1 3.3596 5.7391 2.1062 34 1 1.9065 6.2527 1.2158 35 1 3.1447 9.3555 2.7659 36 1 3.8104 0.2387 1.2838 37 1 3.5762 -0.8789 2.5162 38 1 3.0793 0.9985 -1.9748 39 1 3.9067 -0.1645 -3.9813 40 1 3.3139 -2.5226 -4.3697 41 1 1.8988 -3.7196 -2.7485 42 1 1.0779 -2.5588 -0.7382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749397229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:10 Heat of formation + Delta-G solvation = -43.314358 kcal Electronic energy + Delta-G solvation = -24732.185010 eV Core-core repulsion = 21098.072835 eV Total energy + Delta-G solvation = -3634.112175 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02824 -38.92458 -38.75261 -36.27999 -34.22377 -33.79952 -32.42534 -32.03476 -31.06106 -29.28201 -27.96695 -26.19149 -24.22686 -22.82114 -22.28158 -22.16351 -19.86503 -19.60198 -18.16230 -17.89285 -17.10040 -16.79082 -15.90660 -15.67778 -15.26514 -15.14930 -14.97492 -14.69839 -14.40703 -14.34341 -13.80703 -13.80530 -13.44784 -12.92417 -12.78290 -12.66309 -12.36322 -12.07419 -12.00719 -11.92442 -11.58208 -11.26017 -11.11423 -11.00938 -10.91548 -10.51728 -10.35269 -9.95791 -9.44174 -9.20271 -9.07639 -8.98226 -8.77785 -8.60887 -7.94364 -6.20471 -4.27556 1.09588 1.24537 2.32711 3.12426 3.21653 3.26492 3.28165 3.30371 3.50487 3.62739 4.20481 4.36164 4.39035 4.55942 4.73474 4.83906 4.92210 4.99254 5.15767 5.20981 5.29057 5.32744 5.44360 5.46708 5.58300 5.66738 5.79431 5.89106 6.03066 6.22899 6.31510 6.37578 6.43855 6.62438 6.81236 6.91162 7.08608 7.25373 7.36351 7.46648 7.61843 7.92673 7.93336 8.55499 8.72910 9.01994 9.39191 10.89648 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.002840 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.150995 B = 9857.032890 C =10475.212796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.144 3.856 3 N -0.648 5.648 4 C 0.027 3.973 5 C 0.499 3.501 6 O -0.543 6.543 7 N -0.712 5.712 8 C 0.251 3.749 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.499 3.501 18 N -0.854 5.854 19 O -0.537 6.537 20 C -0.079 4.079 21 C -0.095 4.095 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.107 4.107 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.352 0.648 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.400 0.600 37 H 0.403 0.597 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -21.269 -7.444 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 N -0.283 5.283 4 C -0.105 4.105 5 C 0.283 3.717 6 O -0.421 6.421 7 N -0.360 5.360 8 C 0.131 3.869 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.281 3.719 18 N -0.418 5.418 19 O -0.411 6.411 20 C -0.080 4.080 21 C -0.113 4.113 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.125 4.125 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.174 0.826 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.223 0.777 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.229 0.771 37 H 0.234 0.766 38 H 0.159 0.841 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.953 -21.047 -8.321 22.652 hybrid contribution 0.487 0.251 2.012 2.085 sum -0.466 -20.796 -6.309 21.737 Atomic orbital electron populations 1.21782 0.89987 1.03327 1.03367 1.20085 0.98009 0.87121 0.89927 1.60301 1.17352 1.10124 1.40551 1.22085 1.02849 0.93704 0.91908 1.20172 0.81746 0.86638 0.83182 1.90670 1.38705 1.78192 1.34519 1.46451 1.51853 1.14440 1.23299 1.19106 0.95026 0.75220 0.97589 1.21220 1.33271 0.96765 1.07008 0.91908 1.24951 0.94809 0.97324 0.96907 1.69974 1.35359 1.12122 1.34791 0.86415 0.79145 0.78993 0.82366 1.20471 1.20968 1.19731 1.21628 0.81410 0.82617 0.86265 1.43968 1.18671 1.45848 1.33307 1.90724 1.56178 1.33640 1.60598 1.19333 0.99356 0.93931 0.95356 1.21222 0.95934 1.00736 0.93429 1.21209 1.00211 0.94772 0.97732 1.21209 0.98237 0.94976 0.99185 1.21081 0.98554 0.99917 0.94565 1.21045 0.99686 0.93962 0.97817 0.91616 0.90369 0.90805 0.82646 0.87572 0.92331 0.77718 0.95546 0.95423 0.92413 0.77054 0.76559 0.84137 0.85762 0.86171 0.86057 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 7.58 37.16 0.28 -1.11 16 2 C 0.14 1.59 0.74 -133.91 -0.10 1.49 16 3 N -0.65 -7.83 4.56 -103.58 -0.47 -8.30 16 4 C 0.03 0.35 5.42 -4.98 -0.03 0.32 16 5 C 0.50 9.15 7.87 -10.99 -0.09 9.06 16 6 O -0.54 -11.97 16.20 5.56 0.09 -11.88 16 7 N -0.71 -14.16 5.55 -61.47 -0.34 -14.50 16 8 C 0.25 6.44 5.43 -5.19 -0.03 6.41 16 9 C -0.54 -14.45 9.28 -34.44 -0.32 -14.77 16 10 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 13 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C 0.50 5.83 5.37 -10.99 -0.06 5.77 16 18 N -0.85 -7.70 8.02 31.22 0.25 -7.44 16 19 O -0.54 -7.86 16.93 5.55 0.09 -7.76 16 20 C -0.08 -0.85 4.76 -104.63 -0.50 -1.35 16 21 C -0.10 -1.00 9.14 -39.58 -0.36 -1.36 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.11 -1.10 8.82 -39.58 -0.35 -1.45 16 26 H 0.06 0.71 6.40 -51.93 -0.33 0.38 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 29 H 0.35 4.10 5.86 -39.29 -0.23 3.87 16 30 H 0.11 1.29 6.30 -51.93 -0.33 0.97 16 31 H 0.06 0.70 6.57 -51.93 -0.34 0.35 16 32 H 0.39 6.69 8.32 -40.82 -0.34 6.36 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.40 3.16 7.31 -40.82 -0.30 2.86 16 37 H 0.40 3.14 8.93 -40.82 -0.36 2.77 16 38 H 0.14 1.55 6.41 -52.48 -0.34 1.21 16 39 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.12 1.29 7.58 -52.49 -0.40 0.90 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -33.16 350.73 -7.62 -40.78 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.41 Total: 12.99 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.84 Total: 0.22 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.17 Total: -55.17 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.18 Total: -19.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.16 -7.62 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749397229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.533 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds