Wall clock time and date at job start Fri Apr 10 2020 17:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.46678 * 2 1 4 4 C 1.46905 * 111.00468 * 60.00436 * 3 2 1 5 5 C 1.50696 * 109.47332 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00409 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99776 * 179.97438 * 5 4 3 8 8 C 1.46504 * 120.00119 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.47090 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00482 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99970 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99923 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00172 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46997 * 90.00600 * 13 11 9 15 15 H 1.48499 * 109.47242 * 210.00148 * 13 11 9 16 16 H 1.48499 * 109.47176 * 330.00096 * 13 11 9 17 17 C 1.50698 * 109.47086 * 119.99996 * 2 1 3 18 18 N 1.34777 * 119.99538 * 204.99721 * 17 2 1 19 19 O 1.21283 * 120.00472 * 25.00384 * 17 2 1 20 20 C 1.50695 * 109.46992 * 240.00131 * 2 1 3 21 21 C 1.38234 * 120.00002 * 119.72358 * 20 2 1 22 22 C 1.38234 * 120.00162 * 179.81238 * 21 20 2 23 23 C 1.38234 * 120.00023 * 0.39380 * 22 21 20 24 24 C 1.38235 * 119.99655 * 359.86292 * 23 22 21 25 25 C 1.38234 * 119.99962 * 299.99952 * 20 2 1 26 26 H 1.09006 * 109.47121 * 299.99526 * 1 2 3 27 27 H 1.08990 * 109.47497 * 59.99919 * 1 2 3 28 28 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.00901 * 110.99915 * 183.95163 * 3 2 1 30 30 H 1.09002 * 109.46706 * 299.99735 * 4 3 2 31 31 H 1.09002 * 109.47062 * 59.99281 * 4 3 2 32 32 H 0.97008 * 120.00154 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.46991 * 299.99957 * 8 7 5 34 34 H 1.08997 * 109.46930 * 60.00094 * 8 7 5 35 35 H 0.96998 * 119.99720 * 179.97438 * 12 11 9 36 36 H 0.97001 * 120.00485 * 0.02562 * 18 17 2 37 37 H 0.97005 * 119.99790 * 179.72635 * 18 17 2 38 38 H 1.08005 * 120.00221 * 359.97438 * 21 20 2 39 39 H 1.08006 * 120.00112 * 180.23473 * 22 21 20 40 40 H 1.07995 * 120.00043 * 179.83544 * 23 22 21 41 41 H 1.08003 * 119.99978 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00361 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1099 1.1877 5 6 2.0702 3.5234 1.1532 6 8 2.7661 3.8906 0.2303 7 7 1.7632 4.3794 2.1479 8 6 2.2698 5.7536 2.1141 9 6 1.7867 6.4971 3.3326 10 1 1.1642 5.9963 4.0594 11 6 2.1393 7.8168 3.5197 12 7 2.8969 8.4270 2.6345 13 14 1.5400 8.7387 5.0298 14 1 2.5239 8.5785 6.1304 15 1 1.3925 10.1800 4.7037 16 1 0.2271 8.1908 5.4556 17 6 2.0324 -0.7104 1.2305 18 7 3.2544 -0.4245 1.7218 19 8 1.3371 -1.5394 1.7785 20 6 2.0323 -0.7104 -1.2304 21 6 2.8223 -0.0369 -2.1433 22 6 3.2863 -0.6896 -3.2700 23 6 2.9536 -2.0134 -3.4881 24 6 2.1592 -2.6854 -2.5780 25 6 1.6984 -2.0338 -1.4492 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.0261 1.4127 -0.0649 30 1 0.4588 2.1245 1.1960 31 1 1.9121 1.6107 2.0860 32 1 1.2063 4.0858 2.8859 33 1 3.3596 5.7391 2.1062 34 1 1.9065 6.2527 1.2158 35 1 3.1447 9.3555 2.7659 36 1 3.8104 0.2387 1.2838 37 1 3.5762 -0.8789 2.5162 38 1 3.0793 0.9985 -1.9748 39 1 3.9067 -0.1645 -3.9813 40 1 3.3139 -2.5226 -4.3697 41 1 1.8988 -3.7196 -2.7485 42 1 1.0779 -2.5588 -0.7382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749397229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:09 Heat of formation + Delta-G solvation = -69.470758 kcal Electronic energy + Delta-G solvation = -24733.319236 eV Core-core repulsion = 21098.072835 eV Total energy + Delta-G solvation = -3635.246401 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95010 -40.36835 -39.64365 -37.31916 -36.08242 -34.64177 -34.34184 -33.03858 -31.81141 -30.20897 -29.60065 -27.56248 -25.32058 -24.30551 -23.28646 -23.04903 -21.41543 -20.50514 -19.37435 -18.86600 -18.24435 -17.99175 -17.25678 -17.10914 -16.65845 -16.33160 -16.18830 -15.72359 -15.46772 -15.44758 -15.06973 -14.78231 -14.52296 -14.17650 -14.13839 -13.89477 -13.59942 -13.42218 -13.21911 -12.96721 -12.88962 -12.73054 -12.68295 -12.22841 -12.07003 -11.85897 -11.47873 -11.45180 -10.83993 -10.79549 -10.74685 -9.87801 -9.81509 -9.76780 -9.53478 -8.28739 -6.44617 0.35359 0.50584 1.40775 1.43700 1.45308 1.56514 1.75072 2.16264 2.33413 2.43704 2.87552 3.04949 3.06459 3.53145 3.71228 3.84959 3.97694 4.13618 4.17564 4.18455 4.31323 4.35095 4.60210 4.68957 4.74115 4.79226 5.05969 5.11817 5.16290 5.18009 5.27082 5.38466 5.49077 5.57138 5.64774 5.66258 5.70056 5.80418 5.86095 5.98127 6.09630 6.22634 6.66398 6.91228 7.09171 7.24405 7.48348 8.83186 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.002840 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.150995 B = 9857.032890 C =10475.212796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.150 3.850 3 N -0.653 5.653 4 C 0.044 3.956 5 C 0.500 3.500 6 O -0.582 6.582 7 N -0.708 5.708 8 C 0.268 3.732 9 C -0.556 4.556 10 H 0.082 0.918 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.981 3.019 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.257 1.257 17 C 0.499 3.501 18 N -0.841 5.841 19 O -0.567 6.567 20 C -0.088 4.088 21 C -0.108 4.108 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.354 0.646 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.407 0.593 33 H -0.009 1.009 34 H -0.012 1.012 35 H 0.268 0.732 36 H 0.407 0.593 37 H 0.411 0.589 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 -22.679 -6.716 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 N -0.288 5.288 4 C -0.088 4.088 5 C 0.286 3.714 6 O -0.462 6.462 7 N -0.358 5.358 8 C 0.146 3.854 9 C -0.594 4.594 10 H 0.100 0.900 11 C -0.195 4.195 12 N -0.568 5.568 13 Si 0.805 3.195 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.181 1.181 17 C 0.282 3.718 18 N -0.405 5.405 19 O -0.445 6.445 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.136 4.136 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.176 0.824 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.242 0.758 33 H 0.009 0.991 34 H 0.006 0.994 35 H 0.077 0.923 36 H 0.237 0.763 37 H 0.244 0.756 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.643 -22.495 -7.578 23.794 hybrid contribution 0.763 0.625 1.678 1.946 sum -0.879 -21.870 -5.900 22.669 Atomic orbital electron populations 1.21798 0.89890 1.03494 1.03408 1.20021 0.98069 0.86184 0.90140 1.60276 1.17664 1.10877 1.39987 1.21932 1.03551 0.90004 0.93271 1.21009 0.80459 0.88224 0.81691 1.90655 1.40312 1.79339 1.35885 1.46171 1.52321 1.12664 1.24662 1.18525 0.92852 0.78033 0.96036 1.21621 1.33228 0.97211 1.07297 0.89983 1.26013 0.94736 0.98478 1.00231 1.70128 1.36887 1.12609 1.37189 0.85209 0.79192 0.77130 0.78018 1.19630 1.21032 1.18093 1.21686 0.81760 0.82256 0.86130 1.43885 1.17905 1.45479 1.33268 1.90714 1.57209 1.35076 1.61476 1.19318 0.99982 0.94264 0.95326 1.21219 0.96673 1.00485 0.94242 1.21460 1.00129 0.95350 0.97517 1.21526 0.97508 0.94673 0.99799 1.21381 0.97969 1.00945 0.93924 1.21112 1.00152 0.93860 0.98493 0.91425 0.90384 0.90651 0.82399 0.85858 0.90316 0.75765 0.99080 0.99381 0.92273 0.76260 0.75644 0.85103 0.84292 0.83639 0.83936 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 7.58 71.98 0.55 -2.13 16 2 C 0.15 3.20 0.74 2.04 0.00 3.20 16 3 N -0.65 -15.27 4.56 -481.63 -2.20 -17.46 16 4 C 0.04 1.10 5.42 85.55 0.46 1.56 16 5 C 0.50 18.31 7.87 87.66 0.69 19.00 16 6 O -0.58 -26.29 16.20 -3.02 -0.05 -26.34 16 7 N -0.71 -28.20 5.55 -466.80 -2.59 -30.79 16 8 C 0.27 14.21 5.43 85.63 0.46 14.68 16 9 C -0.56 -29.52 9.28 25.60 0.24 -29.28 16 10 H 0.08 3.95 7.60 -2.91 -0.02 3.92 16 11 C 0.01 0.28 5.46 84.65 0.46 0.74 16 12 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 13 Si 0.98 41.72 29.54 68.60 2.03 43.75 16 14 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 17 C 0.50 11.07 5.37 87.66 0.47 11.54 16 18 N -0.84 -14.00 8.02 -173.53 -1.39 -15.39 16 19 O -0.57 -16.03 16.93 -3.04 -0.05 -16.08 16 20 C -0.09 -1.83 4.76 -19.87 -0.09 -1.92 16 21 C -0.11 -2.21 9.14 22.27 0.20 -2.01 16 22 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 23 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 24 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 25 C -0.12 -2.30 8.82 22.27 0.20 -2.10 16 26 H 0.07 1.36 6.40 -2.38 -0.02 1.34 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.55 7.12 -2.39 -0.02 1.53 16 29 H 0.35 8.09 5.86 -89.69 -0.53 7.56 16 30 H 0.12 2.75 6.30 -2.39 -0.02 2.73 16 31 H 0.08 1.70 6.57 -2.39 -0.02 1.68 16 32 H 0.41 13.45 8.32 -92.70 -0.77 12.68 16 33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.41 5.90 7.31 -92.71 -0.68 5.22 16 37 H 0.41 5.76 8.93 -92.70 -0.83 4.94 16 38 H 0.13 2.89 6.41 -2.91 -0.02 2.87 16 39 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.12 2.42 7.58 -2.91 -0.02 2.40 16 Total: -1.00 -72.90 350.73 -1.36 -74.26 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -1.71 Total: 34.87 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 4.31 Total: 8.03 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -5.89 Total: -118.49 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.10 Total: -42.42 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.90 -1.36 -74.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749397229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.786 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds