Wall clock time and date at job start Fri Apr 10 2020 17:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38599 * 119.54972 * 2 1 4 4 C 1.38581 * 119.35090 * 180.02562 * 3 2 1 5 5 C 1.38632 * 118.48898 * 359.75262 * 4 3 2 6 6 C 1.39271 * 119.05869 * 0.47094 * 5 4 3 7 7 C 1.48170 * 119.72140 * 179.80185 * 6 5 4 8 8 O 1.21510 * 119.99938 * 359.72059 * 7 6 5 9 9 N 1.34768 * 120.00129 * 179.72688 * 7 6 5 10 10 C 1.46500 * 120.00281 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46108 * 324.96999 * 10 9 7 12 12 C 1.53042 * 109.46045 * 84.93072 * 10 9 7 13 13 C 1.52760 * 109.38363 * 181.26060 * 12 10 9 14 14 N 1.46921 * 109.01057 * 305.58794 * 13 12 10 15 15 C 1.36932 * 120.63174 * 233.58791 * 14 13 12 16 16 H 1.08002 * 120.00343 * 152.17256 * 15 14 13 17 17 C 1.38815 * 119.99520 * 331.89167 * 15 14 13 18 18 N 1.31619 * 120.00204 * 343.16792 * 17 15 14 19 19 Si 1.86804 * 119.99843 * 163.16785 * 17 15 14 20 20 H 1.48503 * 109.47110 * 60.00230 * 19 17 15 21 21 H 1.48499 * 109.47407 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47053 * 300.00236 * 19 17 15 23 23 C 1.46925 * 118.73818 * 53.30568 * 14 13 12 24 24 C 1.53042 * 109.45926 * 204.99742 * 10 9 7 25 25 H 1.08993 * 109.49818 * 58.66448 * 24 10 9 26 26 O 1.42897 * 109.49820 * 298.56194 * 24 10 9 27 27 N 1.31498 * 119.54946 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47143 * 270.02305 * 1 2 3 29 29 H 1.09006 * 109.47208 * 30.02431 * 1 2 3 30 30 H 1.08999 * 109.47298 * 150.01735 * 1 2 3 31 31 H 1.08001 * 120.32274 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.75360 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.47122 * 180.26920 * 5 4 3 34 34 H 0.97010 * 120.00296 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.49336 * 301.33734 * 12 10 9 36 36 H 1.09001 * 109.49853 * 61.42956 * 12 10 9 37 37 H 1.08999 * 109.50888 * 185.69982 * 13 12 10 38 38 H 1.09005 * 109.42847 * 65.42578 * 13 12 10 39 39 H 0.97002 * 119.99648 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58924 * 66.43354 * 23 14 13 41 41 H 1.09000 * 109.58889 * 186.85691 * 23 14 13 42 42 H 0.96705 * 114.00012 * 180.16053 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5763 1.2009 -0.0005 5 6 4.2334 -0.0198 0.0042 6 6 3.4820 -1.1925 -0.0007 7 6 4.1691 -2.5052 -0.0002 8 8 5.3832 -2.5555 -0.0006 9 7 3.4476 -3.6435 0.0006 10 6 4.1269 -4.9414 0.0006 11 1 5.0405 -4.8731 -0.5900 12 6 4.4773 -5.3336 1.4378 13 6 5.2134 -6.6722 1.4330 14 7 4.3984 -7.6639 0.7182 15 6 4.0761 -8.8572 1.3073 16 1 3.1685 -9.3707 1.0259 17 6 4.9188 -9.4099 2.2620 18 7 6.1603 -8.9860 2.3684 19 14 4.2907 -10.7552 3.3957 20 1 3.8529 -11.9205 2.5859 21 1 5.3775 -11.1736 4.3170 22 1 3.1425 -10.2414 4.1848 23 6 3.9306 -7.3483 -0.6383 24 6 3.2042 -5.9998 -0.6082 25 1 2.9363 -5.7081 -1.6237 26 8 2.0205 -6.1133 0.1842 27 7 2.1555 -1.1439 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6485 2.1398 0.0004 32 1 4.1318 2.1271 -0.0010 33 1 5.3126 -0.0609 0.0083 34 1 2.4783 -3.6034 0.0013 35 1 5.1155 -4.5676 1.8786 36 1 3.5624 -5.4264 2.0230 37 1 5.3745 -7.0027 2.4591 38 1 6.1731 -6.5564 0.9293 39 1 6.7490 -9.3720 3.0358 40 1 4.7835 -7.2888 -1.3144 41 1 3.2455 -8.1248 -0.9786 42 1 1.3899 -6.7696 -0.1426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090092525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:36 Heat of formation + Delta-G solvation = -26.986946 kcal Electronic energy + Delta-G solvation = -25134.097996 eV Core-core repulsion = 21500.693831 eV Total energy + Delta-G solvation = -3633.404165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76274 -39.30963 -37.84416 -34.88648 -34.34166 -33.22082 -32.80813 -31.64802 -29.90298 -28.74268 -27.96602 -25.57326 -24.28768 -22.54276 -22.24591 -21.71843 -20.31481 -19.46237 -17.90222 -17.08100 -16.74876 -16.23391 -15.86564 -15.48638 -15.18663 -14.80547 -14.56327 -14.26518 -14.10121 -13.86105 -13.61334 -13.38590 -13.13856 -12.85305 -12.57145 -12.50009 -12.18111 -12.04727 -11.96021 -11.19034 -10.99615 -10.80764 -10.69929 -10.30290 -10.24861 -10.17708 -10.13184 -10.00834 -9.72896 -9.52192 -9.27543 -9.21415 -8.63012 -8.36569 -6.64118 -5.75405 -3.17814 0.49510 0.97203 2.77346 3.25722 3.40982 3.47006 3.48394 3.74852 3.91819 4.40136 4.50517 4.63851 4.71982 4.78345 4.84863 5.16513 5.28113 5.30333 5.31981 5.33804 5.40834 5.44092 5.64025 5.71777 5.80144 5.83332 5.85951 5.99850 6.27973 6.36012 6.43604 6.53064 6.61192 6.67722 6.86519 6.96624 7.44394 7.51010 7.71064 7.81418 7.86852 8.14867 8.40139 8.47773 9.22965 9.85804 10.42173 11.33088 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025830 B = 0.003233 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.765290 B = 8658.869865 C = 9039.053531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.125 3.875 3 C -0.156 4.156 4 C -0.079 4.079 5 C -0.121 4.121 6 C 0.091 3.909 7 C 0.563 3.437 8 O -0.536 6.536 9 N -0.695 5.695 10 C 0.159 3.841 11 H 0.092 0.908 12 C -0.144 4.144 13 C 0.174 3.826 14 N -0.582 5.582 15 C -0.250 4.250 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.119 3.881 24 C 0.082 3.918 25 H 0.046 0.954 26 O -0.553 6.553 27 N -0.458 5.458 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.411 0.589 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.019 0.981 39 H 0.254 0.746 40 H 0.027 0.973 41 H 0.062 0.938 42 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 19.799 -6.759 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.176 4.176 4 C -0.105 4.105 5 C -0.142 4.142 6 C -0.047 4.047 7 C 0.347 3.653 8 O -0.413 6.413 9 N -0.345 5.345 10 C 0.056 3.944 11 H 0.110 0.890 12 C -0.184 4.184 13 C 0.048 3.952 14 N -0.304 5.304 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.210 1.210 23 C -0.009 4.009 24 C 0.021 3.979 25 H 0.064 0.936 26 O -0.358 6.358 27 N -0.171 5.171 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.248 0.752 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -9.265 19.299 -6.294 22.314 hybrid contribution -0.462 -0.213 0.299 0.590 sum -9.727 19.087 -5.995 22.246 Atomic orbital electron populations 1.20737 0.88335 1.03679 1.03389 1.21341 0.97208 0.87963 0.95054 1.22164 0.95052 0.99369 1.01000 1.21614 0.94413 0.98290 0.96184 1.22149 1.02446 0.91795 0.97796 1.21301 0.89533 0.94506 0.99377 1.17899 0.86631 0.83340 0.77436 1.90791 1.12908 1.86954 1.50622 1.46067 1.11274 1.05193 1.71967 1.21108 0.94613 0.79507 0.99212 0.89032 1.22430 1.01501 0.99994 0.94444 1.20686 0.90681 0.84291 0.99516 1.43883 1.60622 1.15719 1.10158 1.19081 1.02257 0.97454 1.19198 0.91831 1.25038 0.94643 0.98361 1.01605 1.70027 1.04071 1.44832 1.35679 0.86356 0.77812 0.81621 0.80858 1.20975 1.21682 1.21023 1.21544 0.96796 0.93275 0.89267 1.22616 0.86292 0.97031 0.91991 0.93643 1.86464 1.30443 1.63030 1.55870 1.67420 1.08698 1.30042 1.10912 0.90162 0.90626 0.90131 0.84408 0.84098 0.83358 0.75234 0.92986 0.91488 0.89145 0.96255 0.93553 0.95482 0.92001 0.78159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.17 36.01 0.37 -0.35 16 2 C 0.12 1.25 6.78 -82.60 -0.56 0.69 16 3 C -0.16 -1.26 9.75 -39.32 -0.38 -1.64 16 4 C -0.08 -0.68 10.17 -39.31 -0.40 -1.08 16 5 C -0.12 -1.42 9.63 -39.05 -0.38 -1.80 16 6 C 0.09 1.30 6.75 -83.01 -0.56 0.74 16 7 C 0.56 9.60 7.78 -12.18 -0.09 9.50 16 8 O -0.54 -10.57 15.99 5.36 0.09 -10.49 16 9 N -0.70 -11.64 5.04 -54.61 -0.28 -11.92 16 10 C 0.16 2.98 2.20 -67.89 -0.15 2.83 16 11 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 12 C -0.14 -3.08 5.50 -26.83 -0.15 -3.23 16 13 C 0.17 4.36 5.28 -3.94 -0.02 4.34 16 14 N -0.58 -14.57 2.94 -172.58 -0.51 -15.08 16 15 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 16 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 18 N -0.90 -26.55 11.18 55.49 0.62 -25.93 16 19 Si 0.90 21.91 29.59 -169.99 -5.03 16.89 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.12 2.42 6.16 -3.71 -0.02 2.40 16 24 C 0.08 1.42 3.38 -26.61 -0.09 1.33 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 O -0.55 -9.45 12.09 -35.23 -0.43 -9.87 16 27 N -0.46 -5.97 9.45 -6.06 -0.06 -6.03 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.15 1.69 7.64 -52.49 -0.40 1.29 16 34 H 0.41 6.48 7.58 -40.82 -0.31 6.18 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.51 7.61 -51.93 -0.40 1.12 16 37 H 0.09 2.53 6.05 -51.93 -0.31 2.21 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.37 5.01 9.08 45.56 0.41 5.42 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -33.27 348.35 -8.17 -41.44 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.16 Total: 9.03 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -2.67 Total: 6.71 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.22 Total: -58.95 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.34 Total: -20.36 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.27 -8.17 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090092525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.452 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds