Wall clock time and date at job start Fri Apr 10 2020 17:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38599 * 119.54972 * 2 1 4 4 C 1.38581 * 119.35090 * 180.02562 * 3 2 1 5 5 C 1.38632 * 118.48898 * 359.75262 * 4 3 2 6 6 C 1.39271 * 119.05869 * 0.47094 * 5 4 3 7 7 C 1.48170 * 119.72140 * 179.80185 * 6 5 4 8 8 O 1.21510 * 119.99938 * 359.72059 * 7 6 5 9 9 N 1.34768 * 120.00129 * 179.72688 * 7 6 5 10 10 C 1.46500 * 120.00281 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46108 * 324.96999 * 10 9 7 12 12 C 1.53042 * 109.46045 * 84.93072 * 10 9 7 13 13 C 1.52760 * 109.38363 * 181.26060 * 12 10 9 14 14 N 1.46921 * 109.01057 * 305.58794 * 13 12 10 15 15 C 1.36932 * 120.63174 * 233.58791 * 14 13 12 16 16 H 1.08002 * 120.00343 * 152.17256 * 15 14 13 17 17 C 1.38815 * 119.99520 * 331.89167 * 15 14 13 18 18 N 1.31619 * 120.00204 * 343.16792 * 17 15 14 19 19 Si 1.86804 * 119.99843 * 163.16785 * 17 15 14 20 20 H 1.48503 * 109.47110 * 60.00230 * 19 17 15 21 21 H 1.48499 * 109.47407 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47053 * 300.00236 * 19 17 15 23 23 C 1.46925 * 118.73818 * 53.30568 * 14 13 12 24 24 C 1.53042 * 109.45926 * 204.99742 * 10 9 7 25 25 H 1.08993 * 109.49818 * 58.66448 * 24 10 9 26 26 O 1.42897 * 109.49820 * 298.56194 * 24 10 9 27 27 N 1.31498 * 119.54946 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47143 * 270.02305 * 1 2 3 29 29 H 1.09006 * 109.47208 * 30.02431 * 1 2 3 30 30 H 1.08999 * 109.47298 * 150.01735 * 1 2 3 31 31 H 1.08001 * 120.32274 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.75360 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.47122 * 180.26920 * 5 4 3 34 34 H 0.97010 * 120.00296 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.49336 * 301.33734 * 12 10 9 36 36 H 1.09001 * 109.49853 * 61.42956 * 12 10 9 37 37 H 1.08999 * 109.50888 * 185.69982 * 13 12 10 38 38 H 1.09005 * 109.42847 * 65.42578 * 13 12 10 39 39 H 0.97002 * 119.99648 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58924 * 66.43354 * 23 14 13 41 41 H 1.09000 * 109.58889 * 186.85691 * 23 14 13 42 42 H 0.96705 * 114.00012 * 180.16053 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5763 1.2009 -0.0005 5 6 4.2334 -0.0198 0.0042 6 6 3.4820 -1.1925 -0.0007 7 6 4.1691 -2.5052 -0.0002 8 8 5.3832 -2.5555 -0.0006 9 7 3.4476 -3.6435 0.0006 10 6 4.1269 -4.9414 0.0006 11 1 5.0405 -4.8731 -0.5900 12 6 4.4773 -5.3336 1.4378 13 6 5.2134 -6.6722 1.4330 14 7 4.3984 -7.6639 0.7182 15 6 4.0761 -8.8572 1.3073 16 1 3.1685 -9.3707 1.0259 17 6 4.9188 -9.4099 2.2620 18 7 6.1603 -8.9860 2.3684 19 14 4.2907 -10.7552 3.3957 20 1 3.8529 -11.9205 2.5859 21 1 5.3775 -11.1736 4.3170 22 1 3.1425 -10.2414 4.1848 23 6 3.9306 -7.3483 -0.6383 24 6 3.2042 -5.9998 -0.6082 25 1 2.9363 -5.7081 -1.6237 26 8 2.0205 -6.1133 0.1842 27 7 2.1555 -1.1439 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6485 2.1398 0.0004 32 1 4.1318 2.1271 -0.0010 33 1 5.3126 -0.0609 0.0083 34 1 2.4783 -3.6034 0.0013 35 1 5.1155 -4.5676 1.8786 36 1 3.5624 -5.4264 2.0230 37 1 5.3745 -7.0027 2.4591 38 1 6.1731 -6.5564 0.9293 39 1 6.7490 -9.3720 3.0358 40 1 4.7835 -7.2888 -1.3144 41 1 3.2455 -8.1248 -0.9786 42 1 1.3899 -6.7696 -0.1426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090092525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:35 Heat of formation + Delta-G solvation = -52.545008 kcal Electronic energy + Delta-G solvation = -25135.206277 eV Core-core repulsion = 21500.693831 eV Total energy + Delta-G solvation = -3634.512446 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75910 -40.59427 -39.32851 -36.61398 -35.79339 -33.98179 -33.94622 -33.28144 -31.65750 -30.40218 -28.68360 -27.22412 -25.57634 -24.01165 -23.66319 -22.96398 -21.60992 -21.08597 -19.24689 -18.76970 -17.78738 -17.48213 -17.14359 -16.72839 -16.47225 -16.33716 -16.01224 -15.64960 -15.42935 -15.17735 -15.10303 -14.68562 -14.49791 -14.02365 -13.80412 -13.68424 -13.25158 -13.07445 -13.00054 -12.87058 -12.78859 -12.67306 -12.46553 -12.12231 -12.09791 -11.92080 -11.56464 -11.29952 -10.93547 -10.89857 -10.53951 -10.50833 -10.16591 -9.90867 -8.68352 -7.86509 -5.31753 -0.38144 0.23261 1.46841 1.50708 1.56795 1.66112 2.01198 2.51474 2.81328 3.01766 3.28394 3.37111 3.60916 3.72788 3.80869 3.87770 4.01218 4.02264 4.09145 4.24023 4.32863 4.46046 4.61106 4.68144 4.72820 4.78174 4.84524 4.84948 4.90614 4.97835 5.09181 5.12838 5.13327 5.22914 5.40893 5.45340 5.62283 5.66513 5.67446 6.37291 6.40161 6.82072 6.97154 7.11137 7.13867 7.83080 8.36061 9.20514 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025830 B = 0.003233 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.765290 B = 8658.869865 C = 9039.053531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.110 3.890 3 C -0.137 4.137 4 C -0.073 4.073 5 C -0.131 4.131 6 C 0.059 3.941 7 C 0.560 3.440 8 O -0.573 6.573 9 N -0.688 5.688 10 C 0.164 3.836 11 H 0.078 0.922 12 C -0.125 4.125 13 C 0.185 3.815 14 N -0.598 5.598 15 C -0.256 4.256 16 H 0.074 0.926 17 C -0.056 4.056 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.271 1.271 21 H -0.298 1.298 22 H -0.280 1.280 23 C 0.113 3.887 24 C 0.100 3.900 25 H 0.083 0.917 26 O -0.564 6.564 27 N -0.480 5.480 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.182 0.818 32 H 0.179 0.821 33 H 0.142 0.858 34 H 0.418 0.582 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.055 0.945 38 H -0.006 1.006 39 H 0.249 0.751 40 H 0.026 0.974 41 H 0.079 0.921 42 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 22.061 -7.682 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.030 4.030 3 C -0.157 4.157 4 C -0.098 4.098 5 C -0.152 4.152 6 C -0.078 4.078 7 C 0.346 3.654 8 O -0.453 6.453 9 N -0.338 5.338 10 C 0.059 3.941 11 H 0.096 0.904 12 C -0.166 4.166 13 C 0.059 3.941 14 N -0.321 5.321 15 C -0.386 4.386 16 H 0.092 0.908 17 C -0.251 4.251 18 N -0.585 5.585 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.224 1.224 22 H -0.206 1.206 23 C -0.014 4.014 24 C 0.038 3.962 25 H 0.101 0.899 26 O -0.371 6.371 27 N -0.193 5.193 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.199 0.801 32 H 0.196 0.804 33 H 0.160 0.840 34 H 0.256 0.744 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.013 0.987 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.251 21.562 -7.253 25.838 hybrid contribution 0.376 -0.783 0.541 1.024 sum -11.874 20.779 -6.712 24.856 Atomic orbital electron populations 1.20840 0.86121 1.04780 1.04149 1.22010 0.98737 0.87916 0.94383 1.22670 0.94915 1.00311 0.97766 1.22044 0.95035 0.98208 0.94518 1.22262 1.02298 0.92526 0.98139 1.20887 0.90461 0.93321 1.03141 1.18453 0.86358 0.84497 0.76102 1.90756 1.14567 1.87692 1.52286 1.45871 1.11409 1.04428 1.72082 1.20848 0.95062 0.81290 0.96859 0.90388 1.22135 1.00121 0.97730 0.96565 1.20360 0.90438 0.86113 0.97238 1.44076 1.60648 1.15199 1.12146 1.19498 1.02267 0.97799 1.19017 0.90818 1.25848 0.94811 1.01047 1.03372 1.70198 1.05332 1.46567 1.36390 0.85308 0.76859 0.79285 0.78780 1.19673 1.22432 1.20632 1.21794 0.97254 0.95603 0.86715 1.22358 0.85789 0.94414 0.93599 0.89890 1.86431 1.30439 1.63858 1.56368 1.67335 1.08082 1.32041 1.11889 0.89445 0.87589 0.91015 0.80111 0.80412 0.84049 0.74430 0.93880 0.92487 0.92668 0.98750 0.94239 0.95657 0.90295 0.76031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.17 71.24 0.72 -0.34 16 2 C 0.11 1.91 6.78 42.70 0.29 2.20 16 3 C -0.14 -1.63 9.75 22.44 0.22 -1.42 16 4 C -0.07 -1.01 10.17 22.45 0.23 -0.78 16 5 C -0.13 -2.98 9.63 22.61 0.22 -2.76 16 6 C 0.06 1.66 6.75 41.90 0.28 1.94 16 7 C 0.56 19.63 7.78 86.88 0.68 20.31 16 8 O -0.57 -23.72 15.99 -3.75 -0.06 -23.78 16 9 N -0.69 -23.22 5.04 -444.99 -2.24 -25.46 16 10 C 0.16 6.23 2.20 45.02 0.10 6.33 16 11 H 0.08 3.20 7.58 -2.39 -0.02 3.18 16 12 C -0.13 -5.60 5.50 30.53 0.17 -5.43 16 13 C 0.19 9.72 5.28 86.22 0.45 10.18 16 14 N -0.60 -30.45 2.94 -699.93 -2.06 -32.51 16 15 C -0.26 -14.08 9.58 84.03 0.81 -13.27 16 16 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 17 C -0.06 -3.18 4.92 84.86 0.42 -2.77 16 18 N -0.94 -57.42 11.18 21.65 0.24 -57.18 16 19 Si 0.97 45.73 29.59 68.60 2.03 47.76 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 C 0.11 4.50 6.16 86.36 0.53 5.03 16 24 C 0.10 3.31 3.38 30.67 0.10 3.41 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 O -0.56 -18.19 12.09 -148.98 -1.80 -19.99 16 27 N -0.48 -12.00 9.45 -173.08 -1.64 -13.64 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.46 8.08 -2.38 -0.02 0.44 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 32 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.14 3.29 7.64 -2.91 -0.02 3.27 16 34 H 0.42 12.98 7.58 -92.70 -0.70 12.28 16 35 H 0.04 1.95 8.14 -2.38 -0.02 1.94 16 36 H 0.06 2.64 7.61 -2.39 -0.02 2.62 16 37 H 0.05 3.27 6.05 -2.39 -0.01 3.25 16 38 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 39 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 41 H 0.08 2.86 7.93 -2.39 -0.02 2.84 16 42 H 0.39 9.45 9.08 -74.05 -0.67 8.77 16 Total: -1.00 -76.04 348.35 -0.63 -76.68 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.32 Total: 25.49 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 5.22 Total: 22.64 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -5.70 Total: -128.79 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.86 Total: -43.78 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.04 -0.63 -76.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090092525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.132 kcal (2) G-P(sol) polarization free energy of solvation -76.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds