Wall clock time and date at job start Fri Apr 10 2020 17:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38606 * 119.55006 * 2 1 4 4 C 1.38585 * 119.35334 * 179.97438 * 3 2 1 5 5 C 1.38632 * 118.48839 * 0.02562 * 4 3 2 6 6 C 1.39276 * 119.06099 * 359.97438 * 5 4 3 7 7 C 1.48161 * 119.72209 * 179.97438 * 6 5 4 8 8 O 1.21519 * 120.00032 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00074 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.45996 * 35.02702 * 10 9 7 12 12 C 1.53045 * 109.46119 * 275.07073 * 10 9 7 13 13 C 1.53194 * 109.31274 * 301.34893 * 12 10 9 14 14 N 1.46930 * 108.76829 * 305.36318 * 13 12 10 15 15 C 1.36938 * 120.62591 * 233.60432 * 14 13 12 16 16 H 1.08004 * 120.00256 * 27.69352 * 15 14 13 17 17 C 1.38808 * 120.00087 * 207.68116 * 15 14 13 18 18 N 1.31622 * 120.00071 * 17.36651 * 17 15 14 19 19 Si 1.86803 * 120.00061 * 197.36135 * 17 15 14 20 20 H 1.48501 * 109.47177 * 60.00499 * 19 17 15 21 21 H 1.48507 * 109.47275 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47317 * 300.00194 * 19 17 15 23 23 C 1.46925 * 118.74204 * 53.61273 * 14 13 12 24 24 C 1.53042 * 109.46059 * 155.00252 * 10 9 7 25 25 H 1.08998 * 109.49683 * 178.64035 * 24 10 9 26 26 O 1.42900 * 109.49603 * 298.70548 * 24 10 9 27 27 N 1.31503 * 119.55273 * 180.25745 * 2 1 3 28 28 H 1.09001 * 109.47500 * 89.99487 * 1 2 3 29 29 H 1.09004 * 109.46973 * 209.99799 * 1 2 3 30 30 H 1.09000 * 109.47431 * 329.99776 * 1 2 3 31 31 H 1.08001 * 120.32094 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.75527 * 179.97438 * 4 3 2 33 33 H 1.08000 * 120.46935 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99684 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.49408 * 61.29169 * 12 10 9 36 36 H 1.08993 * 109.49872 * 181.39444 * 12 10 9 37 37 H 1.08996 * 109.58973 * 65.14698 * 13 12 10 38 38 H 1.08993 * 109.58780 * 185.57878 * 13 12 10 39 39 H 0.97006 * 120.00173 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58701 * 186.60208 * 23 14 13 41 41 H 1.08995 * 109.59097 * 66.17722 * 23 14 13 42 42 H 0.96702 * 113.99432 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 0.0005 5 6 4.2334 -0.0197 0.0005 6 6 3.4821 -1.1924 0.0005 7 6 4.1692 -2.5051 -0.0001 8 8 5.3833 -2.5553 -0.0001 9 7 3.4476 -3.6434 0.0004 10 6 4.1270 -4.9413 0.0004 11 1 5.0412 -4.8727 0.5899 12 6 4.4759 -5.3342 -1.4370 13 6 3.1924 -5.3961 -2.2711 14 7 2.2430 -6.3028 -1.6112 15 6 1.6819 -7.3459 -2.2984 16 1 2.2107 -7.7936 -3.1268 17 6 0.4334 -7.8280 -1.9300 18 7 -0.3566 -7.0979 -1.1716 19 14 -0.1257 -9.5131 -2.5109 20 1 0.8185 -10.5463 -2.0146 21 1 -1.4863 -9.7918 -1.9851 22 1 -0.1541 -9.5407 -3.9954 23 6 1.9071 -6.0689 -0.2001 24 6 3.2050 -5.9995 0.6107 25 1 3.7006 -6.9700 0.5890 26 8 2.9045 -5.6476 1.9627 27 7 2.1555 -1.1439 -0.0051 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6484 2.1399 -0.0004 32 1 4.1318 2.1272 0.0001 33 1 5.3126 -0.0608 0.0013 34 1 2.4784 -3.6033 0.0008 35 1 5.1512 -4.5922 -1.8632 36 1 4.9592 -6.3111 -1.4401 37 1 2.7558 -4.4001 -2.3443 38 1 3.4224 -5.7708 -3.2684 39 1 -1.2292 -7.4346 -0.9145 40 1 1.2892 -6.8875 0.1690 41 1 1.3657 -5.1278 -0.1044 42 1 2.3233 -6.2759 2.4127 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090092528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:38 Heat of formation + Delta-G solvation = -27.578558 kcal Electronic energy + Delta-G solvation = -25665.410101 eV Core-core repulsion = 22031.980282 eV Total energy + Delta-G solvation = -3633.429819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63489 -39.33164 -37.68025 -35.25136 -34.11177 -33.05109 -32.74877 -31.67207 -29.58172 -28.83047 -27.79128 -25.51126 -24.50791 -22.48845 -22.16606 -21.71640 -20.72823 -18.67061 -17.98053 -16.95246 -16.52378 -16.48516 -15.95752 -15.31807 -15.09690 -14.82650 -14.54953 -14.21151 -13.97252 -13.68126 -13.58072 -13.32317 -13.20922 -12.72415 -12.40687 -12.31829 -12.19086 -12.02543 -11.78818 -11.64254 -11.05659 -10.99319 -10.80162 -10.43544 -10.19838 -10.08918 -10.02676 -9.96897 -9.61404 -9.39739 -9.29485 -9.06431 -8.62459 -8.48589 -6.75142 -5.85985 -3.29201 0.64714 1.13250 2.91459 3.34428 3.40503 3.41093 3.41925 3.90360 4.09503 4.42436 4.55992 4.62876 4.82031 4.87781 4.98714 5.28105 5.33283 5.43843 5.46671 5.48332 5.50167 5.55358 5.73075 5.86429 5.90191 5.96591 5.98970 6.03846 6.07539 6.28846 6.45392 6.48065 6.52319 6.73629 6.85804 6.98276 7.10701 7.45913 7.68668 7.72865 8.01858 8.13637 8.37107 8.52663 9.12226 9.75247 10.31510 11.21988 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.004239 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.885239 B = 6604.345390 C = 7371.521792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.128 3.872 3 C -0.157 4.157 4 C -0.081 4.081 5 C -0.124 4.124 6 C 0.093 3.907 7 C 0.567 3.433 8 O -0.548 6.548 9 N -0.680 5.680 10 C 0.162 3.838 11 H 0.080 0.920 12 C -0.144 4.144 13 C 0.144 3.856 14 N -0.587 5.587 15 C -0.256 4.256 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.146 3.854 24 C 0.067 3.933 25 H 0.063 0.937 26 O -0.572 6.572 27 N -0.454 5.454 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.416 0.584 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.255 0.745 40 H 0.093 0.907 41 H 0.027 0.973 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 14.093 4.083 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.012 4.012 3 C -0.177 4.177 4 C -0.107 4.107 5 C -0.144 4.144 6 C -0.046 4.046 7 C 0.351 3.649 8 O -0.426 6.426 9 N -0.331 5.331 10 C 0.057 3.943 11 H 0.098 0.902 12 C -0.185 4.185 13 C 0.018 3.982 14 N -0.311 5.311 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.019 3.981 24 C 0.006 3.994 25 H 0.081 0.919 26 O -0.377 6.377 27 N -0.166 5.166 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.045 0.955 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.670 13.671 3.983 14.985 hybrid contribution -0.720 -0.480 -0.183 0.884 sum 3.950 13.191 3.799 14.284 Atomic orbital electron populations 1.20758 0.88273 1.03772 1.03527 1.21371 0.97298 0.87858 0.94652 1.22162 0.95019 0.99354 1.01135 1.21578 0.94409 0.98177 0.96501 1.22099 1.02225 0.91824 0.98301 1.21262 0.89594 0.94398 0.99323 1.17848 0.86486 0.83404 0.77173 1.90735 1.13000 1.87140 1.51726 1.45879 1.11610 1.04626 1.70947 1.20901 0.95341 0.81428 0.96590 0.90205 1.22409 0.99876 1.01296 0.94869 1.20927 0.88834 0.93554 0.94867 1.43948 1.50026 1.31007 1.06131 1.19166 0.98130 1.07075 1.14151 0.91471 1.25044 0.95182 0.98997 1.00265 1.70021 1.08802 1.35553 1.40178 0.86360 0.77484 0.84349 0.78515 1.21000 1.21612 1.20838 1.21405 0.91614 1.01221 0.83874 1.22932 0.98805 0.95826 0.81826 0.91947 1.86422 1.71514 1.53883 1.25861 1.67470 1.08630 1.30067 1.10442 0.90063 0.89866 0.90696 0.84456 0.84237 0.83548 0.74588 0.91702 0.90989 0.96120 0.92469 0.93493 0.88931 0.95498 0.77756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.17 36.00 0.37 -0.67 16 2 C 0.13 1.60 6.78 -82.60 -0.56 1.04 16 3 C -0.16 -1.54 9.75 -39.32 -0.38 -1.92 16 4 C -0.08 -0.80 10.17 -39.31 -0.40 -1.20 16 5 C -0.12 -1.61 9.63 -39.05 -0.38 -1.98 16 6 C 0.09 1.49 6.75 -83.01 -0.56 0.93 16 7 C 0.57 10.42 7.78 -12.18 -0.09 10.33 16 8 O -0.55 -10.93 15.99 5.35 0.09 -10.84 16 9 N -0.68 -12.76 4.14 -54.61 -0.23 -12.98 16 10 C 0.16 3.06 2.47 -67.89 -0.17 2.89 16 11 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 12 C -0.14 -2.68 5.77 -26.61 -0.15 -2.83 16 13 C 0.14 3.06 6.26 -3.71 -0.02 3.03 16 14 N -0.59 -14.20 2.99 -172.32 -0.52 -14.72 16 15 C -0.26 -6.80 9.58 -15.06 -0.14 -6.94 16 16 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 18 N -0.90 -25.12 11.19 55.49 0.62 -24.50 16 19 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.15 3.30 4.64 -3.71 -0.02 3.28 16 24 C 0.07 1.28 3.36 -26.61 -0.09 1.20 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 O -0.57 -10.21 13.21 -35.23 -0.47 -10.67 16 27 N -0.45 -7.13 9.45 -6.06 -0.06 -7.19 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.15 1.79 7.64 -52.49 -0.40 1.39 16 34 H 0.42 8.16 6.20 -40.82 -0.25 7.91 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 38 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 41 H 0.03 0.65 6.64 -51.93 -0.34 0.31 16 42 H 0.38 5.36 9.08 45.56 0.41 5.77 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -31.60 345.83 -8.10 -39.70 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.69 Total: 7.15 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.18 Total: -59.39 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.38 Total: -21.52 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.60 -8.10 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090092528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.118 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds