Wall clock time and date at job start Fri Apr 10 2020 17:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38606 * 119.55006 * 2 1 4 4 C 1.38585 * 119.35334 * 179.97438 * 3 2 1 5 5 C 1.38632 * 118.48839 * 0.02562 * 4 3 2 6 6 C 1.39276 * 119.06099 * 359.97438 * 5 4 3 7 7 C 1.48161 * 119.72209 * 179.97438 * 6 5 4 8 8 O 1.21519 * 120.00032 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00074 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.45996 * 35.02702 * 10 9 7 12 12 C 1.53045 * 109.46119 * 275.07073 * 10 9 7 13 13 C 1.53194 * 109.31274 * 301.34893 * 12 10 9 14 14 N 1.46930 * 108.76829 * 305.36318 * 13 12 10 15 15 C 1.36938 * 120.62591 * 233.60432 * 14 13 12 16 16 H 1.08004 * 120.00256 * 27.69352 * 15 14 13 17 17 C 1.38808 * 120.00087 * 207.68116 * 15 14 13 18 18 N 1.31622 * 120.00071 * 17.36651 * 17 15 14 19 19 Si 1.86803 * 120.00061 * 197.36135 * 17 15 14 20 20 H 1.48501 * 109.47177 * 60.00499 * 19 17 15 21 21 H 1.48507 * 109.47275 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47317 * 300.00194 * 19 17 15 23 23 C 1.46925 * 118.74204 * 53.61273 * 14 13 12 24 24 C 1.53042 * 109.46059 * 155.00252 * 10 9 7 25 25 H 1.08998 * 109.49683 * 178.64035 * 24 10 9 26 26 O 1.42900 * 109.49603 * 298.70548 * 24 10 9 27 27 N 1.31503 * 119.55273 * 180.25745 * 2 1 3 28 28 H 1.09001 * 109.47500 * 89.99487 * 1 2 3 29 29 H 1.09004 * 109.46973 * 209.99799 * 1 2 3 30 30 H 1.09000 * 109.47431 * 329.99776 * 1 2 3 31 31 H 1.08001 * 120.32094 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.75527 * 179.97438 * 4 3 2 33 33 H 1.08000 * 120.46935 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99684 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.49408 * 61.29169 * 12 10 9 36 36 H 1.08993 * 109.49872 * 181.39444 * 12 10 9 37 37 H 1.08996 * 109.58973 * 65.14698 * 13 12 10 38 38 H 1.08993 * 109.58780 * 185.57878 * 13 12 10 39 39 H 0.97006 * 120.00173 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58701 * 186.60208 * 23 14 13 41 41 H 1.08995 * 109.59097 * 66.17722 * 23 14 13 42 42 H 0.96702 * 113.99432 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 0.0005 5 6 4.2334 -0.0197 0.0005 6 6 3.4821 -1.1924 0.0005 7 6 4.1692 -2.5051 -0.0001 8 8 5.3833 -2.5553 -0.0001 9 7 3.4476 -3.6434 0.0004 10 6 4.1270 -4.9413 0.0004 11 1 5.0412 -4.8727 0.5899 12 6 4.4759 -5.3342 -1.4370 13 6 3.1924 -5.3961 -2.2711 14 7 2.2430 -6.3028 -1.6112 15 6 1.6819 -7.3459 -2.2984 16 1 2.2107 -7.7936 -3.1268 17 6 0.4334 -7.8280 -1.9300 18 7 -0.3566 -7.0979 -1.1716 19 14 -0.1257 -9.5131 -2.5109 20 1 0.8185 -10.5463 -2.0146 21 1 -1.4863 -9.7918 -1.9851 22 1 -0.1541 -9.5407 -3.9954 23 6 1.9071 -6.0689 -0.2001 24 6 3.2050 -5.9995 0.6107 25 1 3.7006 -6.9700 0.5890 26 8 2.9045 -5.6476 1.9627 27 7 2.1555 -1.1439 -0.0051 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6484 2.1399 -0.0004 32 1 4.1318 2.1272 0.0001 33 1 5.3126 -0.0608 0.0013 34 1 2.4784 -3.6033 0.0008 35 1 5.1512 -4.5922 -1.8632 36 1 4.9592 -6.3111 -1.4401 37 1 2.7558 -4.4001 -2.3443 38 1 3.4224 -5.7708 -3.2684 39 1 -1.2292 -7.4346 -0.9145 40 1 1.2892 -6.8875 0.1690 41 1 1.3657 -5.1278 -0.1044 42 1 2.3233 -6.2759 2.4127 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090092528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:38 Heat of formation + Delta-G solvation = -50.836317 kcal Electronic energy + Delta-G solvation = -25666.418633 eV Core-core repulsion = 22031.980282 eV Total energy + Delta-G solvation = -3634.438351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78005 -40.67592 -39.20050 -36.88751 -35.74779 -34.02835 -33.96423 -33.19937 -31.30142 -30.49987 -28.69353 -27.30824 -25.72569 -24.05567 -23.54175 -23.11465 -22.04708 -20.29040 -19.27225 -18.75035 -18.11527 -17.49945 -16.98237 -16.87535 -16.60548 -16.29263 -15.91744 -15.58601 -15.54385 -15.27180 -14.89608 -14.74365 -14.38759 -14.00986 -13.89708 -13.56019 -13.32874 -13.21747 -13.09699 -12.88344 -12.86501 -12.71431 -12.62412 -12.21611 -12.00970 -11.84675 -11.43729 -11.25333 -10.96177 -10.92977 -10.58239 -10.48621 -10.16604 -9.90050 -8.72483 -7.89294 -5.35897 -0.35640 0.25065 1.49091 1.50653 1.57578 1.69695 2.08968 2.50174 2.83598 3.02879 3.14415 3.26624 3.63538 3.70559 3.85280 3.92782 4.03785 4.09897 4.11003 4.23861 4.33192 4.43277 4.47170 4.60913 4.68191 4.75710 4.80507 4.85902 4.90942 5.03436 5.11317 5.12492 5.14769 5.21126 5.28377 5.47637 5.57357 5.64442 5.67497 6.33993 6.40810 6.80197 6.83674 7.10909 7.12099 7.78743 8.31885 9.16472 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.004239 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.885239 B = 6604.345390 C = 7371.521792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.108 3.892 3 C -0.137 4.137 4 C -0.071 4.071 5 C -0.127 4.127 6 C 0.056 3.944 7 C 0.563 3.437 8 O -0.571 6.571 9 N -0.684 5.684 10 C 0.162 3.838 11 H 0.080 0.920 12 C -0.130 4.130 13 C 0.146 3.854 14 N -0.600 5.600 15 C -0.269 4.269 16 H 0.069 0.931 17 C -0.043 4.043 18 N -0.930 5.930 19 Si 0.967 3.033 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.278 1.278 23 C 0.160 3.840 24 C 0.084 3.916 25 H 0.069 0.931 26 O -0.575 6.575 27 N -0.490 5.490 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.149 0.851 34 H 0.410 0.590 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.008 0.992 38 H 0.060 0.940 39 H 0.252 0.748 40 H 0.067 0.933 41 H 0.004 0.996 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 15.882 4.106 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.033 4.033 3 C -0.156 4.156 4 C -0.096 4.096 5 C -0.148 4.148 6 C -0.081 4.081 7 C 0.349 3.651 8 O -0.451 6.451 9 N -0.334 5.334 10 C 0.057 3.943 11 H 0.098 0.902 12 C -0.170 4.170 13 C 0.021 3.979 14 N -0.325 5.325 15 C -0.399 4.399 16 H 0.087 0.913 17 C -0.239 4.239 18 N -0.575 5.575 19 Si 0.795 3.205 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.204 1.204 23 C 0.033 3.967 24 C 0.023 3.977 25 H 0.087 0.913 26 O -0.381 6.381 27 N -0.203 5.203 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.199 0.801 32 H 0.201 0.799 33 H 0.166 0.834 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.022 0.978 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.024 15.458 4.011 16.741 hybrid contribution -0.878 -0.897 -0.187 1.269 sum 4.146 14.560 3.824 15.615 Atomic orbital electron populations 1.20834 0.86853 1.04470 1.03946 1.21937 0.98464 0.88141 0.94718 1.22646 0.95181 0.99909 0.97888 1.22069 0.94739 0.98388 0.94428 1.22273 1.02378 0.92183 0.97983 1.21010 0.90219 0.93887 1.02979 1.18325 0.86379 0.84256 0.76125 1.90694 1.13836 1.87692 1.52909 1.45888 1.11208 1.04880 1.71379 1.20876 0.95141 0.81616 0.96621 0.90213 1.22257 0.98437 1.02115 0.94219 1.20957 0.89287 0.92267 0.95402 1.44154 1.50361 1.31194 1.06804 1.19486 0.98375 1.07712 1.14348 0.91320 1.25754 0.95291 1.02058 1.00766 1.70170 1.08932 1.36936 1.41474 0.85355 0.76691 0.80389 0.78047 1.20301 1.22003 1.20399 1.21167 0.92779 0.98850 0.83880 1.22615 0.96821 0.96362 0.81920 0.91303 1.86403 1.71973 1.54738 1.25024 1.67361 1.08775 1.32343 1.11833 0.89719 0.91969 0.87191 0.80051 0.79932 0.83363 0.75297 0.90942 0.89900 0.97395 0.92194 0.93923 0.91436 0.97797 0.75919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 10.17 71.23 0.72 -1.17 16 2 C 0.11 2.54 6.78 42.69 0.29 2.83 16 3 C -0.14 -2.18 9.75 22.44 0.22 -1.96 16 4 C -0.07 -1.16 10.17 22.45 0.23 -0.93 16 5 C -0.13 -3.16 9.63 22.61 0.22 -2.94 16 6 C 0.06 1.82 6.75 41.89 0.28 2.10 16 7 C 0.56 21.29 7.78 86.88 0.68 21.97 16 8 O -0.57 -23.20 15.99 -3.77 -0.06 -23.26 16 9 N -0.68 -26.51 4.14 -444.97 -1.84 -28.35 16 10 C 0.16 6.18 2.47 45.02 0.11 6.29 16 11 H 0.08 3.07 7.58 -2.39 -0.02 3.06 16 12 C -0.13 -4.83 5.77 30.67 0.18 -4.65 16 13 C 0.15 6.30 6.26 86.36 0.54 6.84 16 14 N -0.60 -29.63 2.99 -699.11 -2.09 -31.72 16 15 C -0.27 -14.46 9.58 84.03 0.81 -13.66 16 16 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 17 C -0.04 -2.30 4.91 84.86 0.42 -1.89 16 18 N -0.93 -53.04 11.19 21.65 0.24 -52.79 16 19 Si 0.97 43.58 29.59 68.60 2.03 45.61 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 C 0.16 7.47 4.64 86.36 0.40 7.87 16 24 C 0.08 3.25 3.36 30.67 0.10 3.35 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 O -0.57 -20.55 13.21 -148.98 -1.97 -22.52 16 27 N -0.49 -15.64 9.45 -173.08 -1.64 -17.28 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.11 1.18 8.08 -2.39 -0.02 1.16 16 31 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.15 3.51 7.64 -2.91 -0.02 3.49 16 34 H 0.41 16.93 6.20 -92.71 -0.57 16.36 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.01 0.37 7.74 -2.39 -0.02 0.35 16 38 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 39 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 40 H 0.07 3.49 6.04 -2.39 -0.01 3.48 16 41 H 0.00 0.21 6.64 -2.39 -0.02 0.19 16 42 H 0.39 11.12 9.08 -74.06 -0.67 10.45 16 Total: -1.00 -70.25 345.83 -0.33 -70.58 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.19 Total: 35.69 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 5.19 Total: 24.05 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -5.33 Total: -130.14 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -2.03 Total: -45.79 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.25 -0.33 -70.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090092528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.741 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds