Wall clock time and date at job start Fri Apr 10 2020 17:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38403 * 120.85668 * 2 1 4 4 C 1.38308 * 119.30808 * 180.02562 * 3 2 1 5 5 N 1.31955 * 121.07806 * 359.97438 * 4 3 2 6 6 C 1.31672 * 121.88119 * 359.72042 * 5 4 3 7 7 C 1.39559 * 120.56229 * 0.54227 * 6 5 4 8 8 C 1.47845 * 120.55848 * 179.74719 * 7 6 5 9 9 O 1.21553 * 119.99766 * 174.00817 * 8 7 6 10 10 N 1.34776 * 119.99728 * 354.01120 * 8 7 6 11 11 C 1.46502 * 119.99686 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.44905 * 35.03311 * 11 10 8 13 13 C 1.53036 * 109.45892 * 275.07074 * 11 10 8 14 14 C 1.53198 * 109.31154 * 178.61610 * 13 11 10 15 15 N 1.46928 * 108.77627 * 54.63022 * 14 13 11 16 16 C 1.36935 * 120.62997 * 126.66917 * 15 14 13 17 17 H 1.08006 * 119.99784 * 332.54180 * 16 15 14 18 18 C 1.38814 * 120.00143 * 152.54311 * 16 15 14 19 19 N 1.31616 * 119.99765 * 342.32789 * 18 16 15 20 20 Si 1.86799 * 120.00077 * 162.33205 * 18 16 15 21 21 H 1.48507 * 109.46992 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47160 * 119.99814 * 20 18 16 23 23 H 1.48495 * 109.47137 * 240.00321 * 20 18 16 24 24 C 1.46926 * 118.73934 * 306.39250 * 15 14 13 25 25 C 1.53038 * 109.46172 * 154.99821 * 11 10 8 26 26 H 1.09001 * 109.52162 * 61.41572 * 25 11 10 27 27 O 1.42905 * 109.49620 * 301.33859 * 25 11 10 28 28 H 1.08996 * 109.47562 * 264.28231 * 1 2 3 29 29 H 1.09003 * 109.47076 * 24.28153 * 1 2 3 30 30 H 1.08994 * 109.47157 * 144.27387 * 1 2 3 31 31 H 1.08006 * 120.34314 * 0.03791 * 3 2 1 32 32 H 1.07995 * 119.45964 * 180.02562 * 4 3 2 33 33 H 1.07998 * 119.71954 * 180.26588 * 6 5 4 34 34 H 0.96997 * 120.00638 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.49657 * 298.56264 * 13 11 10 36 36 H 1.08991 * 109.50096 * 58.63313 * 13 11 10 37 37 H 1.09001 * 109.58245 * 294.84376 * 14 13 11 38 38 H 1.08999 * 109.58977 * 174.42263 * 14 13 11 39 39 H 0.97002 * 119.99652 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.58299 * 173.39594 * 24 15 14 41 41 H 1.08998 * 109.58477 * 293.67992 * 24 15 14 42 42 H 0.96696 * 113.99416 * 180.15634 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2498 0.0026 -0.0005 6 6 3.6197 -1.1536 0.0054 7 6 2.2249 -1.2017 0.0006 8 6 1.5176 -2.4999 0.0017 9 8 0.3071 -2.5324 0.1074 10 7 2.2150 -3.6473 -0.1145 11 6 1.5141 -4.9338 -0.1128 12 1 0.5529 -4.8241 -0.6152 13 6 1.2860 -5.3883 1.3306 14 6 0.5225 -6.7165 1.3289 15 7 1.2567 -7.6829 0.5008 16 6 1.6025 -8.9097 1.0012 17 1 1.7545 -9.0365 2.0630 18 6 1.7576 -9.9905 0.1439 19 7 1.2498 -9.9460 -1.0695 20 14 2.6870 -11.5078 0.7125 21 1 3.1542 -11.3081 2.1079 22 1 1.7883 -12.6887 0.6562 23 1 3.8566 -11.7331 -0.1742 24 6 1.6074 -7.3103 -0.8765 25 6 2.3587 -5.9756 -0.8501 26 1 3.3105 -6.1039 -0.3345 27 8 2.5969 -5.5357 -2.1887 28 1 -0.3634 -0.1024 1.0225 29 1 -0.3633 0.9368 -0.4226 30 1 -0.3633 -0.8342 -0.6000 31 1 1.6965 2.1346 0.0006 32 1 4.1557 2.0764 -0.0001 33 1 4.1871 -2.0725 0.0095 34 1 3.1809 -3.6215 -0.1992 35 1 2.2475 -5.5220 1.8261 36 1 0.7046 -4.6347 1.8617 37 1 -0.4745 -6.5642 0.9156 38 1 0.4440 -7.0941 2.3483 39 1 1.3585 -10.7011 -1.6687 40 1 2.2448 -8.0798 -1.3121 41 1 0.6990 -7.2090 -1.4702 42 1 3.1255 -6.1500 -2.7162 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090159056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:40 Heat of formation + Delta-G solvation = -50.684318 kcal Electronic energy + Delta-G solvation = -25262.822796 eV Core-core repulsion = 21628.391036 eV Total energy + Delta-G solvation = -3634.431760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.83672 -40.50782 -39.24717 -36.90582 -36.04277 -34.70423 -34.12288 -32.62226 -31.05063 -30.49357 -28.87394 -27.07452 -25.45372 -24.15236 -23.66405 -22.92970 -21.72025 -21.13352 -19.18124 -18.52044 -18.13122 -17.82339 -17.24485 -16.96528 -16.59558 -16.20535 -16.02978 -15.60271 -15.37663 -15.16730 -14.80828 -14.71460 -14.38837 -13.87409 -13.80337 -13.68092 -13.59096 -13.40712 -13.35759 -13.05891 -12.94843 -12.69069 -12.50819 -12.10099 -11.99669 -11.87755 -11.40368 -11.08193 -10.94941 -10.63712 -10.59321 -10.39337 -10.24749 -10.00657 -8.78148 -7.91455 -5.37994 -0.36527 0.17563 1.47278 1.50275 1.60501 1.81605 2.03896 2.49295 2.81162 3.09056 3.24941 3.33874 3.61259 3.64874 3.70569 3.81631 3.90431 4.01717 4.05941 4.29661 4.39930 4.43495 4.44250 4.56602 4.67256 4.69772 4.75955 4.85030 4.87197 4.92621 5.03537 5.14960 5.15725 5.31598 5.36051 5.47379 5.56003 5.62782 5.63805 6.32340 6.47440 6.80895 6.84907 7.09287 7.14952 7.76905 8.29499 9.15269 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.003207 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.627212 B = 8728.268168 C = 8998.868512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.003 3.997 3 C -0.176 4.176 4 C 0.122 3.878 5 N -0.512 5.512 6 C 0.138 3.862 7 C -0.208 4.208 8 C 0.559 3.441 9 O -0.565 6.565 10 N -0.700 5.700 11 C 0.172 3.828 12 H 0.059 0.941 13 C -0.123 4.123 14 C 0.142 3.858 15 N -0.605 5.605 16 C -0.265 4.265 17 H 0.073 0.927 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.296 1.296 23 H -0.287 1.287 24 C 0.157 3.843 25 C 0.092 3.908 26 H 0.067 0.933 27 O -0.574 6.574 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.175 0.825 32 H 0.195 0.805 33 H 0.171 0.829 34 H 0.409 0.591 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.010 0.990 38 H 0.067 0.933 39 H 0.252 0.748 40 H 0.071 0.929 41 H -0.005 1.005 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.806 21.638 1.762 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.005 4.005 3 C -0.195 4.195 4 C -0.033 4.033 5 N -0.222 5.222 6 C -0.021 4.021 7 C -0.213 4.213 8 C 0.347 3.653 9 O -0.445 6.445 10 N -0.350 5.350 11 C 0.067 3.933 12 H 0.077 0.923 13 C -0.163 4.163 14 C 0.016 3.984 15 N -0.329 5.329 16 C -0.395 4.395 17 H 0.091 0.909 18 C -0.244 4.244 19 N -0.580 5.580 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.223 1.223 23 H -0.214 1.214 24 C 0.030 3.970 25 C 0.031 3.969 26 H 0.085 0.915 27 O -0.381 6.381 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.193 0.807 32 H 0.212 0.788 33 H 0.188 0.812 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.013 0.987 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.522 22.000 1.922 22.764 hybrid contribution -0.164 -1.890 -0.314 1.923 sum 5.358 20.110 1.608 20.874 Atomic orbital electron populations 1.21031 0.89109 1.03891 1.03554 1.20769 0.97915 0.91929 0.89913 1.22413 0.95568 0.99003 1.02500 1.23611 0.92280 0.96962 0.90455 1.67777 1.41347 0.98875 1.14169 1.23165 0.89980 0.97442 0.91470 1.20847 0.95835 0.93670 1.10960 1.18400 0.86762 0.84211 0.75939 1.90715 1.14899 1.87554 1.51366 1.45813 1.11154 1.04840 1.73179 1.20688 0.95355 0.81411 0.95874 0.92258 1.22206 1.01680 0.97433 0.94949 1.21039 0.92789 0.89049 0.95533 1.44285 1.63915 1.13797 1.10934 1.19589 1.40298 0.86173 0.93398 0.90922 1.25818 1.01129 1.00222 0.97214 1.70195 1.46949 1.31961 1.08901 0.85187 0.77889 0.79023 0.78192 1.18954 1.22289 1.21354 1.21223 0.96391 0.93374 0.86031 1.22561 0.97835 0.93581 0.82940 0.91489 1.86396 1.77105 1.50277 1.24299 0.90388 0.89113 0.90988 0.80744 0.78786 0.81190 0.75380 0.90687 0.90958 0.97235 0.91459 0.93929 0.91029 0.98662 0.75828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 8.87 71.23 0.63 -1.85 16 2 C 0.00 0.07 5.95 -19.40 -0.12 -0.05 16 3 C -0.18 -2.51 9.78 22.33 0.22 -2.29 16 4 C 0.12 1.78 11.17 84.69 0.95 2.73 16 5 N -0.51 -10.33 10.35 -194.76 -2.01 -12.35 16 6 C 0.14 2.91 10.70 85.04 0.91 3.82 16 7 C -0.21 -5.06 5.89 -19.99 -0.12 -5.18 16 8 C 0.56 16.85 7.69 86.79 0.67 17.52 16 9 O -0.56 -20.48 13.15 -3.88 -0.05 -20.53 16 10 N -0.70 -20.05 4.87 -445.28 -2.17 -22.22 16 11 C 0.17 6.03 2.12 45.02 0.10 6.12 16 12 H 0.06 2.47 7.58 -2.38 -0.02 2.46 16 13 C -0.12 -4.25 5.65 30.67 0.17 -4.07 16 14 C 0.14 5.93 6.52 86.36 0.56 6.50 16 15 N -0.60 -29.58 3.00 -699.08 -2.10 -31.68 16 16 C -0.26 -14.04 9.59 84.03 0.81 -13.23 16 17 H 0.07 3.74 7.89 -2.91 -0.02 3.71 16 18 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 19 N -0.93 -53.61 11.18 21.65 0.24 -53.37 16 20 Si 0.97 43.21 29.59 68.60 2.03 45.24 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.16 7.32 4.93 86.36 0.43 7.74 16 25 C 0.09 3.32 3.14 30.67 0.10 3.41 16 26 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 27 O -0.57 -18.82 13.16 -148.98 -1.96 -20.78 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.29 8.07 -2.39 -0.02 1.27 16 30 H 0.07 1.96 5.91 -2.39 -0.01 1.95 16 31 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.17 2.91 6.47 -2.91 -0.02 2.89 16 34 H 0.41 9.49 6.71 -92.71 -0.62 8.87 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 39 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.07 3.66 6.02 -2.39 -0.01 3.65 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.39 10.17 9.08 -74.06 -0.67 9.49 16 Total: -1.00 -69.82 342.45 -0.54 -70.36 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.23 Total: 26.35 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 5.72 Total: 18.98 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -6.04 Total: -119.62 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -2.01 Total: -41.31 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -69.82 -0.54 -70.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090159056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.674 kcal (2) G-P(sol) polarization free energy of solvation -69.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds