Wall clock time and date at job start Fri Apr 10 2020 17:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38353 * 119.40797 * 2 1 4 4 C 1.38337 * 119.45689 * 179.70794 * 3 2 1 5 5 C 1.39990 * 118.34961 * 0.54973 * 4 3 2 6 6 C 1.47523 * 120.59723 * 179.74986 * 5 4 3 7 7 O 1.21594 * 120.00191 * 179.97438 * 6 5 4 8 8 N 1.34785 * 120.00024 * 359.97438 * 6 5 4 9 9 C 1.46495 * 119.99821 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47137 * 180.02562 * 9 8 6 11 11 C 1.53783 * 113.61136 * 274.13742 * 10 9 8 12 12 C 1.53962 * 87.01553 * 220.04433 * 11 10 9 13 13 N 1.46496 * 113.53931 * 270.80803 * 12 11 10 14 14 C 1.36937 * 120.00110 * 252.49882 * 13 12 11 15 15 H 1.07995 * 120.00046 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99654 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00340 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99576 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46840 * 90.00399 * 18 16 14 20 20 H 1.48505 * 109.46728 * 210.00335 * 18 16 14 21 21 H 1.48501 * 109.47216 * 330.00052 * 18 16 14 22 22 C 1.53774 * 87.11186 * 25.36464 * 12 11 10 23 23 C 1.40277 * 118.80331 * 359.73740 * 5 4 3 24 24 O 1.35425 * 119.79713 * 179.97438 * 23 5 4 25 25 N 1.31884 * 119.40825 * 180.27072 * 2 1 3 26 26 H 1.09002 * 109.47152 * 269.72855 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72956 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72937 * 1 2 3 29 29 H 1.08000 * 120.26943 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.82360 * 180.28539 * 4 3 2 31 31 H 0.97001 * 119.99638 * 359.97438 * 8 6 5 32 32 H 1.09008 * 109.47345 * 299.99934 * 9 8 6 33 33 H 1.08992 * 109.47694 * 59.99720 * 9 8 6 34 34 H 1.09005 * 112.85048 * 45.32869 * 10 9 8 35 35 H 1.08992 * 113.61343 * 334.56542 * 11 10 9 36 36 H 1.08999 * 113.61346 * 105.47308 * 11 10 9 37 37 H 1.09004 * 113.73763 * 139.94220 * 12 11 10 38 38 H 0.97004 * 119.99778 * 72.49696 * 13 12 11 39 39 H 0.96994 * 120.00383 * 179.97438 * 17 16 14 40 40 H 1.09001 * 113.61218 * 220.08658 * 22 12 11 41 41 H 1.08996 * 113.61959 * 89.18680 * 22 12 11 42 42 H 0.96700 * 114.00496 * 269.97454 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2064 0.0061 5 6 4.2356 -0.0250 0.0004 6 6 5.7097 -0.0815 0.0009 7 8 6.2769 -1.1570 -0.0036 8 7 6.4279 1.0591 0.0066 9 6 7.8918 1.0028 0.0077 10 6 8.4567 2.4247 0.0151 11 6 8.5911 3.0414 -1.3873 12 6 9.9305 3.6327 -0.9111 13 7 9.7991 4.9525 -0.2891 14 6 10.2327 6.0687 -0.9534 15 1 10.6711 5.9761 -1.9360 16 6 10.1078 7.3194 -0.3642 17 7 9.5730 7.4324 0.8331 18 14 10.6986 8.8421 -1.2708 19 1 9.5890 9.3920 -2.0902 20 1 11.1409 9.8632 -0.2873 21 1 11.8357 8.4816 -2.1553 22 6 9.9912 2.4775 0.1021 23 6 3.4758 -1.2041 -0.0057 24 8 4.0991 -2.4064 -0.0119 25 7 2.1546 -1.1489 -0.0054 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3633 0.8924 -0.5096 29 1 1.6411 2.1375 0.0004 30 1 4.1223 2.1343 0.0109 31 1 5.9754 1.9170 0.0099 32 1 8.2343 0.4716 0.8958 33 1 8.2360 0.4793 -0.8841 34 1 7.9561 3.0754 0.7320 35 1 8.6978 2.3020 -2.1809 36 1 7.8342 3.7941 -1.6076 37 1 10.7186 3.5957 -1.6631 38 1 9.4050 5.0358 0.5933 39 1 9.4861 8.3062 1.2449 40 1 10.3629 2.7756 1.0824 41 1 10.4814 1.5836 -0.2836 42 1 4.2799 -2.7512 -0.8971 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091255040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:47 Heat of formation + Delta-G solvation = -11.149185 kcal Electronic energy + Delta-G solvation = -23946.826440 eV Core-core repulsion = 20314.109052 eV Total energy + Delta-G solvation = -3632.717388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13710 -39.44506 -38.41967 -37.43483 -34.73811 -33.62182 -33.00969 -31.94869 -30.23741 -28.63945 -27.04156 -25.10855 -23.99061 -23.51336 -23.26516 -21.77602 -20.78695 -18.96224 -18.55804 -17.86758 -17.32525 -17.12921 -16.11855 -15.64463 -15.37698 -14.95673 -14.90399 -14.63939 -14.21054 -14.12661 -13.93778 -13.39782 -13.29899 -12.93339 -12.92596 -12.63306 -12.45283 -12.27563 -11.96742 -11.86461 -11.44517 -11.08777 -10.88025 -10.53657 -10.37618 -10.29590 -10.21167 -10.00671 -9.73798 -9.69858 -9.47602 -9.23824 -8.99064 -8.91971 -7.04934 -5.85325 -3.14461 0.24868 0.74609 2.64325 2.98838 3.20961 3.38327 3.44041 3.45551 3.48892 4.14215 4.26640 4.43027 4.51671 4.59023 4.88897 4.98549 5.02000 5.06351 5.15139 5.17241 5.19619 5.40886 5.49954 5.55413 5.57540 5.63357 5.66458 5.82856 5.91122 6.05387 6.06663 6.16906 6.32712 6.34451 6.54147 6.68950 6.84825 6.99193 7.23092 7.40090 7.53119 7.64807 8.10650 8.33868 9.44621 10.01921 10.36096 11.37099 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002617 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.460194 B =10696.565274 C =11849.862910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.174 3.826 3 C -0.190 4.190 4 C -0.024 4.024 5 C -0.211 4.211 6 C 0.559 3.441 7 O -0.525 6.525 8 N -0.719 5.719 9 C 0.132 3.868 10 C -0.121 4.121 11 C -0.169 4.169 12 C 0.167 3.833 13 N -0.706 5.706 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.147 4.147 23 C 0.375 3.625 24 O -0.460 6.460 25 N -0.511 5.511 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.400 0.600 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.079 -14.555 -2.758 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.036 3.964 3 C -0.210 4.210 4 C -0.050 4.050 5 C -0.217 4.217 6 C 0.345 3.655 7 O -0.402 6.402 8 N -0.371 5.371 9 C 0.009 3.991 10 C -0.139 4.139 11 C -0.210 4.210 12 C 0.055 3.945 13 N -0.344 5.344 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.187 4.187 23 C 0.194 3.806 24 O -0.267 6.267 25 N -0.231 5.231 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.235 0.765 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -15.966 -15.931 -2.271 22.669 hybrid contribution 0.391 2.034 -0.533 2.139 sum -15.575 -13.897 -2.804 21.061 Atomic orbital electron populations 1.20842 0.88072 1.04023 1.03706 1.21300 0.97134 0.87214 0.90796 1.21939 0.94511 0.99713 1.04868 1.21805 0.94682 0.97186 0.91314 1.21158 0.95114 0.94417 1.11049 1.17814 0.85884 0.84518 0.77258 1.90809 1.71766 1.28438 1.49180 1.45971 1.08011 1.08291 1.74820 1.21512 0.77795 0.97827 1.01946 1.22724 0.97371 0.93973 0.99866 1.23922 1.02777 0.99814 0.94471 1.21090 0.94232 0.85374 0.93797 1.42174 1.72524 1.00026 1.19704 1.19291 1.33053 0.85305 0.99723 0.90982 1.24765 1.01605 0.97688 0.96806 1.69652 1.50007 1.23324 1.15091 0.86171 0.78331 0.83042 0.78532 1.21678 1.21732 1.20675 1.23438 0.93760 0.99968 1.01541 1.19127 0.86050 0.85118 0.90283 1.84718 1.76370 1.31921 1.33714 1.67143 1.09356 1.30453 1.16151 0.89713 0.90045 0.90004 0.83561 0.83650 0.76508 0.91615 0.91372 0.88901 0.91384 0.91528 0.91921 0.78122 0.93414 0.91267 0.90401 0.73512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.23 16 2 C 0.17 1.53 6.78 -82.53 -0.56 0.97 16 3 C -0.19 -1.46 9.71 -39.50 -0.38 -1.84 16 4 C -0.02 -0.21 9.64 -38.89 -0.37 -0.59 16 5 C -0.21 -2.45 5.90 -104.69 -0.62 -3.07 16 6 C 0.56 7.55 7.77 -12.47 -0.10 7.45 16 7 O -0.52 -8.67 15.19 -16.49 -0.25 -8.92 16 8 N -0.72 -8.64 5.51 -61.35 -0.34 -8.97 16 9 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 10 C -0.12 -1.72 3.62 -89.81 -0.33 -2.05 16 11 C -0.17 -2.68 7.44 -25.82 -0.19 -2.87 16 12 C 0.17 3.16 4.57 -67.03 -0.31 2.85 16 13 N -0.71 -16.93 5.31 -52.55 -0.28 -17.21 16 14 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 18 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.15 -2.29 7.39 -25.92 -0.19 -2.48 16 23 C 0.37 4.62 7.77 -16.61 -0.13 4.49 16 24 O -0.46 -5.72 11.66 -39.74 -0.46 -6.18 16 25 N -0.51 -5.90 10.28 -9.21 -0.09 -6.00 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 29 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.15 0.97 6.51 -52.49 -0.34 0.63 16 31 H 0.40 4.03 6.57 -40.82 -0.27 3.76 16 32 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.38 9.76 7.90 -40.82 -0.32 9.44 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.41 3.32 9.06 45.56 0.41 3.73 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -33.84 356.76 -8.53 -42.38 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.11 Total: 12.13 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.08 Total: -2.77 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.01 Total: -58.79 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.71 Total: -15.10 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.84 -8.53 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091255040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.228 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds