Wall clock time and date at job start Fri Apr 10 2020 17:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38353 * 119.40797 * 2 1 4 4 C 1.38337 * 119.45689 * 179.70794 * 3 2 1 5 5 C 1.39990 * 118.34961 * 0.54973 * 4 3 2 6 6 C 1.47523 * 120.59723 * 179.74986 * 5 4 3 7 7 O 1.21594 * 120.00191 * 179.97438 * 6 5 4 8 8 N 1.34785 * 120.00024 * 359.97438 * 6 5 4 9 9 C 1.46495 * 119.99821 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47137 * 180.02562 * 9 8 6 11 11 C 1.53783 * 113.61136 * 274.13742 * 10 9 8 12 12 C 1.53962 * 87.01553 * 220.04433 * 11 10 9 13 13 N 1.46496 * 113.53931 * 270.80803 * 12 11 10 14 14 C 1.36937 * 120.00110 * 252.49882 * 13 12 11 15 15 H 1.07995 * 120.00046 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99654 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00340 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99576 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46840 * 90.00399 * 18 16 14 20 20 H 1.48505 * 109.46728 * 210.00335 * 18 16 14 21 21 H 1.48501 * 109.47216 * 330.00052 * 18 16 14 22 22 C 1.53774 * 87.11186 * 25.36464 * 12 11 10 23 23 C 1.40277 * 118.80331 * 359.73740 * 5 4 3 24 24 O 1.35425 * 119.79713 * 179.97438 * 23 5 4 25 25 N 1.31884 * 119.40825 * 180.27072 * 2 1 3 26 26 H 1.09002 * 109.47152 * 269.72855 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72956 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72937 * 1 2 3 29 29 H 1.08000 * 120.26943 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.82360 * 180.28539 * 4 3 2 31 31 H 0.97001 * 119.99638 * 359.97438 * 8 6 5 32 32 H 1.09008 * 109.47345 * 299.99934 * 9 8 6 33 33 H 1.08992 * 109.47694 * 59.99720 * 9 8 6 34 34 H 1.09005 * 112.85048 * 45.32869 * 10 9 8 35 35 H 1.08992 * 113.61343 * 334.56542 * 11 10 9 36 36 H 1.08999 * 113.61346 * 105.47308 * 11 10 9 37 37 H 1.09004 * 113.73763 * 139.94220 * 12 11 10 38 38 H 0.97004 * 119.99778 * 72.49696 * 13 12 11 39 39 H 0.96994 * 120.00383 * 179.97438 * 17 16 14 40 40 H 1.09001 * 113.61218 * 220.08658 * 22 12 11 41 41 H 1.08996 * 113.61959 * 89.18680 * 22 12 11 42 42 H 0.96700 * 114.00496 * 269.97454 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2064 0.0061 5 6 4.2356 -0.0250 0.0004 6 6 5.7097 -0.0815 0.0009 7 8 6.2769 -1.1570 -0.0036 8 7 6.4279 1.0591 0.0066 9 6 7.8918 1.0028 0.0077 10 6 8.4567 2.4247 0.0151 11 6 8.5911 3.0414 -1.3873 12 6 9.9305 3.6327 -0.9111 13 7 9.7991 4.9525 -0.2891 14 6 10.2327 6.0687 -0.9534 15 1 10.6711 5.9761 -1.9360 16 6 10.1078 7.3194 -0.3642 17 7 9.5730 7.4324 0.8331 18 14 10.6986 8.8421 -1.2708 19 1 9.5890 9.3920 -2.0902 20 1 11.1409 9.8632 -0.2873 21 1 11.8357 8.4816 -2.1553 22 6 9.9912 2.4775 0.1021 23 6 3.4758 -1.2041 -0.0057 24 8 4.0991 -2.4064 -0.0119 25 7 2.1546 -1.1489 -0.0054 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3633 0.8924 -0.5096 29 1 1.6411 2.1375 0.0004 30 1 4.1223 2.1343 0.0109 31 1 5.9754 1.9170 0.0099 32 1 8.2343 0.4716 0.8958 33 1 8.2360 0.4793 -0.8841 34 1 7.9561 3.0754 0.7320 35 1 8.6978 2.3020 -2.1809 36 1 7.8342 3.7941 -1.6076 37 1 10.7186 3.5957 -1.6631 38 1 9.4050 5.0358 0.5933 39 1 9.4861 8.3062 1.2449 40 1 10.3629 2.7756 1.0824 41 1 10.4814 1.5836 -0.2836 42 1 4.2799 -2.7512 -0.8971 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091255040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:47 Heat of formation + Delta-G solvation = -37.043274 kcal Electronic energy + Delta-G solvation = -23947.949292 eV Core-core repulsion = 20314.109052 eV Total energy + Delta-G solvation = -3633.840240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94990 -40.54538 -39.65436 -38.26926 -36.02107 -35.08073 -34.05791 -32.62729 -32.03209 -29.53222 -28.12362 -26.42940 -25.72386 -24.45265 -24.05258 -23.05228 -21.75319 -20.00532 -19.68079 -19.35209 -18.68911 -18.05807 -16.99256 -16.75532 -16.54743 -16.33656 -15.94862 -15.75798 -15.40750 -15.27242 -14.85267 -14.69456 -14.59989 -14.15592 -13.73303 -13.57957 -13.28999 -13.12828 -13.03867 -12.92911 -12.90142 -12.64239 -12.62092 -12.16189 -12.06731 -11.57307 -11.47868 -11.23335 -11.04534 -10.94261 -10.81731 -10.47463 -10.17856 -9.82318 -8.98930 -7.94715 -5.22713 -0.52034 0.04374 1.49091 1.49815 1.58335 1.74791 2.03793 2.44100 2.56462 2.70343 3.37886 3.44394 3.63022 3.66266 3.73406 3.80266 3.85436 3.95400 4.15188 4.27718 4.33364 4.40490 4.41096 4.66124 4.73072 4.76596 4.79520 4.88623 4.94323 5.00016 5.02864 5.12217 5.12489 5.26152 5.35571 5.46904 5.48984 5.54826 5.66919 6.29145 6.41760 6.52707 6.79875 7.11799 7.34346 8.11512 8.33810 9.28526 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002617 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.460194 B =10696.565274 C =11849.862910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.167 3.833 3 C -0.181 4.181 4 C -0.021 4.021 5 C -0.229 4.229 6 C 0.560 3.440 7 O -0.562 6.562 8 N -0.711 5.711 9 C 0.141 3.859 10 C -0.102 4.102 11 C -0.152 4.152 12 C 0.144 3.856 13 N -0.719 5.719 14 C -0.241 4.241 15 H 0.076 0.924 16 C -0.074 4.074 17 N -0.969 5.969 18 Si 0.971 3.029 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.271 1.271 22 C -0.135 4.135 23 C 0.356 3.644 24 O -0.480 6.480 25 N -0.535 5.535 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.183 0.817 30 H 0.168 0.832 31 H 0.410 0.590 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.375 0.625 39 H 0.251 0.749 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.273 -14.178 -3.695 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 C -0.200 4.200 4 C -0.047 4.047 5 C -0.236 4.236 6 C 0.347 3.653 7 O -0.442 6.442 8 N -0.363 5.363 9 C 0.018 3.982 10 C -0.121 4.121 11 C -0.192 4.192 12 C 0.034 3.966 13 N -0.358 5.358 14 C -0.373 4.373 15 H 0.094 0.906 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.800 3.200 19 H -0.214 1.214 20 H -0.224 1.224 21 H -0.196 1.196 22 C -0.175 4.175 23 C 0.176 3.824 24 O -0.289 6.289 25 N -0.256 5.256 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.201 0.799 30 H 0.185 0.815 31 H 0.247 0.753 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.207 0.793 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -17.161 -15.580 -3.253 23.405 hybrid contribution 0.708 1.856 -0.278 2.006 sum -16.453 -13.723 -3.530 21.714 Atomic orbital electron populations 1.20970 0.85641 1.05203 1.04640 1.21998 0.98774 0.86978 0.89350 1.22347 0.94070 1.00726 1.02903 1.22107 0.95503 0.96841 0.90260 1.21046 0.93936 0.95439 1.13201 1.18093 0.86730 0.84098 0.76389 1.90782 1.72629 1.29728 1.51079 1.45862 1.07604 1.08576 1.74272 1.21337 0.78373 0.96520 1.01979 1.22502 0.96608 0.94466 0.98545 1.23733 0.99951 0.99617 0.95948 1.21419 0.95877 0.84381 0.94972 1.42299 1.72699 1.01340 1.19425 1.19661 1.31555 0.86374 0.99731 0.90603 1.25524 1.02851 1.00506 0.97781 1.69797 1.52038 1.23431 1.16647 0.85176 0.78045 0.79472 0.77289 1.21354 1.22403 1.19574 1.23350 0.94836 0.99298 0.99989 1.19320 0.86621 0.85181 0.91287 1.84663 1.76675 1.32526 1.35056 1.67186 1.09055 1.32104 1.17258 0.88688 0.90472 0.87263 0.79931 0.81497 0.75300 0.91946 0.91057 0.89864 0.89050 0.93012 0.92263 0.79324 0.94019 0.92417 0.87689 0.72223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.16 71.24 0.72 -0.16 16 2 C 0.17 2.61 6.78 42.58 0.29 2.90 16 3 C -0.18 -2.22 9.71 22.32 0.22 -2.01 16 4 C -0.02 -0.33 9.64 22.72 0.22 -0.11 16 5 C -0.23 -5.18 5.90 -19.91 -0.12 -5.30 16 6 C 0.56 14.81 7.77 86.69 0.67 15.48 16 7 O -0.56 -18.70 15.19 16.80 0.26 -18.44 16 8 N -0.71 -16.08 5.51 -466.28 -2.57 -18.65 16 9 C 0.14 3.44 5.50 86.38 0.47 3.91 16 10 C -0.10 -2.77 3.62 -10.27 -0.04 -2.80 16 11 C -0.15 -4.54 7.44 31.18 0.23 -4.31 16 12 C 0.14 5.27 4.57 45.58 0.21 5.48 16 13 N -0.72 -34.53 5.31 -320.17 -1.70 -36.23 16 14 C -0.24 -12.95 9.97 84.03 0.84 -12.12 16 15 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 16 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 17 N -0.97 -57.50 13.06 21.65 0.28 -57.22 16 18 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C -0.14 -3.99 7.39 31.12 0.23 -3.76 16 23 C 0.36 8.83 7.77 85.13 0.66 9.49 16 24 O -0.48 -12.42 11.66 -66.39 -0.77 -13.20 16 25 N -0.54 -12.09 10.28 -296.07 -3.04 -15.13 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.11 0.30 8.07 -2.38 -0.02 0.28 16 29 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 30 H 0.17 1.74 6.51 -2.91 -0.02 1.72 16 31 H 0.41 7.50 6.57 -92.71 -0.61 6.89 16 32 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.07 1.74 7.88 -2.39 -0.02 1.72 16 34 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.09 2.34 7.92 -2.39 -0.02 2.32 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 38 H 0.37 19.25 7.90 -92.71 -0.73 18.52 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.10 2.55 8.10 -2.39 -0.02 2.53 16 42 H 0.42 7.39 9.06 -74.06 -0.67 6.72 16 Total: -1.00 -74.02 356.76 -1.38 -75.40 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.94 Total: 33.56 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.08 Total: 3.02 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -7.03 Total: -127.24 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.52 Total: -31.64 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -74.02 -1.38 -75.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091255040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.356 kcal (2) G-P(sol) polarization free energy of solvation -74.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds