Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41260 * 126.71074 * 2 1 4 4 C 1.36819 * 103.84901 * 180.13222 * 3 2 1 5 5 C 1.47514 * 126.94506 * 179.90637 * 4 3 2 6 6 O 1.21587 * 119.99733 * 359.71952 * 5 4 3 7 7 N 1.34771 * 120.00253 * 179.71030 * 5 4 3 8 8 C 1.47217 * 126.69943 * 359.97438 * 7 5 4 9 9 C 1.53783 * 106.37557 * 211.29161 * 8 7 5 10 10 H 1.08993 * 111.11278 * 102.65663 * 9 8 7 11 11 C 1.53783 * 110.15199 * 228.15154 * 9 8 7 12 12 N 1.47220 * 106.37377 * 94.32010 * 11 9 8 13 13 C 1.36941 * 126.69758 * 211.24960 * 12 11 9 14 14 H 1.08006 * 119.99519 * 162.12219 * 13 12 11 15 15 C 1.38813 * 120.00234 * 342.12606 * 13 12 11 16 16 N 1.31617 * 120.00091 * 159.75896 * 15 13 12 17 17 Si 1.86800 * 119.99836 * 339.75705 * 15 13 12 18 18 H 1.48499 * 109.47405 * 84.68301 * 17 15 13 19 19 H 1.48505 * 109.46920 * 204.68239 * 17 15 13 20 20 H 1.48503 * 109.47231 * 324.67706 * 17 15 13 21 21 C 1.48840 * 107.15525 * 30.66173 * 12 11 9 22 22 C 1.53784 * 105.56378 * 329.91611 * 21 12 11 23 23 C 1.52999 * 111.85808 * 139.96892 * 22 21 12 24 24 C 1.47215 * 126.70604 * 180.02562 * 7 5 4 25 25 O 1.34638 * 106.11411 * 359.65149 * 4 3 2 26 26 N 1.20893 * 111.46494 * 0.23914 * 25 4 3 27 27 H 1.09008 * 109.46704 * 270.25371 * 1 2 3 28 28 H 1.08999 * 109.47203 * 30.24248 * 1 2 3 29 29 H 1.08992 * 109.47771 * 150.25078 * 1 2 3 30 30 H 1.08004 * 128.07322 * 0.02562 * 3 2 1 31 31 H 1.08999 * 110.07535 * 330.51942 * 8 7 5 32 32 H 1.08997 * 110.07548 * 92.00816 * 8 7 5 33 33 H 1.08999 * 110.07253 * 213.54001 * 11 9 8 34 34 H 1.08996 * 110.07773 * 335.03439 * 11 9 8 35 35 H 0.96996 * 120.00087 * 180.02562 * 16 15 13 36 36 H 1.09000 * 111.00408 * 210.66524 * 21 12 11 37 37 H 1.08997 * 109.92935 * 88.60071 * 21 12 11 38 38 H 1.08997 * 109.47469 * 182.04028 * 23 22 21 39 39 H 1.09000 * 109.47474 * 302.04879 * 23 22 21 40 40 H 1.09002 * 109.47086 * 62.04368 * 23 22 21 41 41 H 1.09002 * 110.06998 * 29.48252 * 24 7 5 42 42 H 1.09002 * 110.12100 * 267.96594 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1324 0.0000 4 6 3.6121 0.6009 -0.0031 5 6 4.8871 1.3428 -0.0063 6 8 4.8830 2.5586 -0.0116 7 7 6.0566 0.6729 -0.0032 8 6 6.2333 -0.7886 0.0039 9 6 7.5372 -1.0639 0.7713 10 1 7.3311 -1.4107 1.7838 11 6 8.4214 -2.0421 -0.0201 12 7 9.3481 -1.2165 -0.8117 13 6 9.8777 -1.5258 -2.0361 14 1 10.3058 -0.7481 -2.6513 15 6 9.8643 -2.8387 -2.4866 16 7 9.9898 -3.0950 -3.7715 17 14 9.6682 -4.2419 -1.2691 18 1 8.2252 -4.4633 -0.9972 19 1 10.2599 -5.4786 -1.8398 20 1 10.3638 -3.8992 -0.0026 21 6 9.5944 0.0312 -0.0385 22 6 8.3069 0.2798 0.7649 23 6 8.6059 0.7747 2.1814 24 6 7.4067 1.2597 -0.0053 25 8 3.4540 -0.7362 0.0033 26 7 2.2847 -1.0433 0.0048 27 1 -0.3633 0.0046 1.0278 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3634 -0.8921 -0.5099 30 1 2.0679 2.1746 0.0004 31 1 5.3936 -1.2646 0.5102 32 1 6.3137 -1.1607 -1.0175 33 1 8.9803 -2.6794 0.6652 34 1 7.8056 -2.6527 -0.6804 35 1 9.9800 -4.0124 -4.0863 36 1 9.7879 0.8719 -0.7047 37 1 10.4364 -0.1116 0.6388 38 1 7.6708 0.9032 2.7264 39 1 9.2298 0.0448 2.6972 40 1 9.1304 1.7288 2.1297 41 1 7.3944 2.2282 0.4946 42 1 7.7654 1.3716 -1.0285 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091473836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = 65.941470 kcal Electronic energy + Delta-G solvation = -25867.843980 eV Core-core repulsion = 22238.469494 eV Total energy + Delta-G solvation = -3629.374486 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.15781 -40.49255 -38.63691 -35.42853 -34.92123 -33.10185 -32.09530 -31.43017 -30.30993 -28.97666 -27.06190 -26.17140 -25.74059 -23.65883 -23.01100 -21.92952 -20.81611 -19.70694 -19.05869 -17.95442 -17.61905 -16.81341 -16.38112 -15.94627 -15.80950 -15.01021 -14.64241 -14.21228 -13.86514 -13.76130 -13.63975 -13.59118 -13.39302 -13.04663 -12.91339 -12.69745 -12.57686 -12.18749 -12.05171 -11.76502 -11.57850 -11.30244 -10.99668 -10.79189 -10.56633 -10.49049 -10.32406 -10.30133 -10.05120 -9.96190 -9.88675 -9.43846 -8.80466 -8.69024 -7.13958 -5.96312 -3.28459 0.66632 1.84502 2.43410 2.89802 3.04871 3.30460 3.45660 3.47309 3.84627 4.14243 4.49555 4.51875 4.67082 4.77442 4.79829 4.82566 5.05113 5.11267 5.15173 5.31278 5.33967 5.37587 5.41857 5.44079 5.50314 5.65832 5.74974 5.78032 5.91233 5.94255 6.04110 6.06307 6.14308 6.21195 6.39149 6.41284 6.57112 6.60723 6.62928 7.36132 7.59746 7.75068 7.99289 8.27490 8.76946 9.64199 10.12948 11.19689 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.004583 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.868835 B = 6107.453644 C = 7032.482272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.008 3.992 3 C -0.157 4.157 4 C -0.070 4.070 5 C 0.617 3.383 6 O -0.522 6.522 7 N -0.596 5.596 8 C 0.102 3.898 9 C -0.104 4.104 10 H 0.089 0.911 11 C 0.117 3.883 12 N -0.605 5.605 13 C -0.240 4.240 14 H 0.094 0.906 15 C 0.021 3.979 16 N -0.910 5.910 17 Si 0.882 3.118 18 H -0.285 1.285 19 H -0.303 1.303 20 H -0.274 1.274 21 C 0.144 3.856 22 C -0.087 4.087 23 C -0.127 4.127 24 C 0.123 3.877 25 O 0.120 5.880 26 N -0.348 5.348 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.183 0.817 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.263 0.737 36 H 0.058 0.942 37 H 0.033 0.967 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 7.600 11.610 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 C -0.179 4.179 4 C -0.136 4.136 5 C 0.403 3.597 6 O -0.399 6.399 7 N -0.327 5.327 8 C -0.021 4.021 9 C -0.124 4.124 10 H 0.107 0.893 11 C -0.009 4.009 12 N -0.331 5.331 13 C -0.367 4.367 14 H 0.112 0.888 15 C -0.177 4.177 16 N -0.554 5.554 17 Si 0.712 3.288 18 H -0.212 1.212 19 H -0.230 1.230 20 H -0.199 1.199 21 C 0.018 3.982 22 C -0.089 4.089 23 C -0.184 4.184 24 C 0.001 3.999 25 O 0.048 5.952 26 N -0.050 5.050 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.200 0.800 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.380 6.836 11.350 19.553 hybrid contribution -0.164 -0.247 0.536 0.613 sum -14.544 6.589 11.885 19.905 Atomic orbital electron populations 1.20195 0.85308 1.04126 1.03593 1.23644 0.99351 0.88339 1.03617 1.22820 0.89850 1.01677 1.03576 1.24219 0.97180 0.83971 1.08256 1.16076 0.80097 0.85583 0.77963 1.90857 1.85673 1.11539 1.51834 1.48425 1.05492 1.08861 1.69883 1.22517 0.98139 0.79046 1.02351 1.22799 0.94019 0.96337 0.99279 0.89263 1.21773 0.91757 0.93429 0.93956 1.45158 1.51053 1.17385 1.19462 1.18661 1.34844 0.93772 0.89396 0.88835 1.24960 1.00044 0.96966 0.95762 1.69810 1.53562 1.19804 1.12222 0.87016 0.77515 0.82571 0.81700 1.21182 1.23050 1.19914 1.21709 0.92666 0.90623 0.93214 1.22152 0.96783 0.94163 0.95777 1.21702 1.01249 1.01151 0.94341 1.22285 0.79325 0.96749 1.01513 1.85101 1.21136 1.22186 1.66791 1.73756 0.89491 1.24481 1.17250 0.89961 0.89727 0.90248 0.79990 0.90109 0.89498 0.95081 0.91441 0.92670 0.92388 0.94870 0.92844 0.92017 0.92203 0.90163 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.47 36.01 0.38 -0.15 16 2 C 0.01 0.09 7.31 -82.17 -0.60 -0.51 16 3 C -0.16 -1.81 10.91 -38.95 -0.43 -2.23 16 4 C -0.07 -0.97 7.08 -36.32 -0.26 -1.23 16 5 C 0.62 9.50 7.88 -12.48 -0.10 9.40 16 6 O -0.52 -9.02 17.15 5.29 0.09 -8.93 16 7 N -0.60 -9.08 3.32 -172.83 -0.57 -9.66 16 8 C 0.10 1.56 6.00 -3.24 -0.02 1.54 16 9 C -0.10 -1.62 3.63 -88.83 -0.32 -1.94 16 10 H 0.09 1.20 7.88 -51.93 -0.41 0.79 16 11 C 0.12 2.34 4.14 -3.24 -0.01 2.33 16 12 N -0.61 -13.62 3.24 -169.78 -0.55 -14.17 16 13 C -0.24 -6.50 10.65 -15.06 -0.16 -6.66 16 14 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 15 C 0.02 0.60 5.45 -17.43 -0.09 0.50 16 16 N -0.91 -27.54 13.97 55.49 0.78 -26.76 16 17 Si 0.88 21.85 24.36 -169.99 -4.14 17.71 16 18 H -0.28 -6.73 6.36 56.52 0.36 -6.37 16 19 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 20 H -0.27 -6.63 6.49 56.52 0.37 -6.27 16 21 C 0.14 2.57 6.34 -2.34 -0.01 2.55 16 22 C -0.09 -1.28 1.08 -152.74 -0.16 -1.44 16 23 C -0.13 -1.50 8.43 37.16 0.31 -1.19 16 24 C 0.12 1.84 6.11 -3.27 -0.02 1.82 16 25 O 0.12 1.70 8.52 15.56 0.13 1.83 16 26 N -0.35 -4.77 12.04 33.52 0.40 -4.37 16 27 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.08 1.11 5.88 -51.93 -0.31 0.80 16 32 H 0.09 1.51 7.46 -51.93 -0.39 1.12 16 33 H 0.03 0.65 6.16 -51.93 -0.32 0.33 16 34 H 0.07 1.47 5.20 -51.93 -0.27 1.20 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.06 1.02 7.49 -51.93 -0.39 0.63 16 37 H 0.03 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.12 7.60 -51.93 -0.39 0.72 16 42 H 0.08 1.37 7.40 -51.93 -0.38 0.98 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -31.85 334.27 -6.19 -38.04 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.86 Total: -1.53 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.50 Total: 2.80 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.05 Total: -54.95 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.22 Total: -7.10 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.85 -6.19 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091473836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.985 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds