Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41260 * 126.71074 * 2 1 4 4 C 1.36819 * 103.84901 * 180.13222 * 3 2 1 5 5 C 1.47514 * 126.94506 * 179.90637 * 4 3 2 6 6 O 1.21587 * 119.99733 * 359.71952 * 5 4 3 7 7 N 1.34771 * 120.00253 * 179.71030 * 5 4 3 8 8 C 1.47217 * 126.69943 * 359.97438 * 7 5 4 9 9 C 1.53783 * 106.37557 * 211.29161 * 8 7 5 10 10 H 1.08993 * 111.11278 * 102.65663 * 9 8 7 11 11 C 1.53783 * 110.15199 * 228.15154 * 9 8 7 12 12 N 1.47220 * 106.37377 * 94.32010 * 11 9 8 13 13 C 1.36941 * 126.69758 * 211.24960 * 12 11 9 14 14 H 1.08006 * 119.99519 * 162.12219 * 13 12 11 15 15 C 1.38813 * 120.00234 * 342.12606 * 13 12 11 16 16 N 1.31617 * 120.00091 * 159.75896 * 15 13 12 17 17 Si 1.86800 * 119.99836 * 339.75705 * 15 13 12 18 18 H 1.48499 * 109.47405 * 84.68301 * 17 15 13 19 19 H 1.48505 * 109.46920 * 204.68239 * 17 15 13 20 20 H 1.48503 * 109.47231 * 324.67706 * 17 15 13 21 21 C 1.48840 * 107.15525 * 30.66173 * 12 11 9 22 22 C 1.53784 * 105.56378 * 329.91611 * 21 12 11 23 23 C 1.52999 * 111.85808 * 139.96892 * 22 21 12 24 24 C 1.47215 * 126.70604 * 180.02562 * 7 5 4 25 25 O 1.34638 * 106.11411 * 359.65149 * 4 3 2 26 26 N 1.20893 * 111.46494 * 0.23914 * 25 4 3 27 27 H 1.09008 * 109.46704 * 270.25371 * 1 2 3 28 28 H 1.08999 * 109.47203 * 30.24248 * 1 2 3 29 29 H 1.08992 * 109.47771 * 150.25078 * 1 2 3 30 30 H 1.08004 * 128.07322 * 0.02562 * 3 2 1 31 31 H 1.08999 * 110.07535 * 330.51942 * 8 7 5 32 32 H 1.08997 * 110.07548 * 92.00816 * 8 7 5 33 33 H 1.08999 * 110.07253 * 213.54001 * 11 9 8 34 34 H 1.08996 * 110.07773 * 335.03439 * 11 9 8 35 35 H 0.96996 * 120.00087 * 180.02562 * 16 15 13 36 36 H 1.09000 * 111.00408 * 210.66524 * 21 12 11 37 37 H 1.08997 * 109.92935 * 88.60071 * 21 12 11 38 38 H 1.08997 * 109.47469 * 182.04028 * 23 22 21 39 39 H 1.09000 * 109.47474 * 302.04879 * 23 22 21 40 40 H 1.09002 * 109.47086 * 62.04368 * 23 22 21 41 41 H 1.09002 * 110.06998 * 29.48252 * 24 7 5 42 42 H 1.09002 * 110.12100 * 267.96594 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1324 0.0000 4 6 3.6121 0.6009 -0.0031 5 6 4.8871 1.3428 -0.0063 6 8 4.8830 2.5586 -0.0116 7 7 6.0566 0.6729 -0.0032 8 6 6.2333 -0.7886 0.0039 9 6 7.5372 -1.0639 0.7713 10 1 7.3311 -1.4107 1.7838 11 6 8.4214 -2.0421 -0.0201 12 7 9.3481 -1.2165 -0.8117 13 6 9.8777 -1.5258 -2.0361 14 1 10.3058 -0.7481 -2.6513 15 6 9.8643 -2.8387 -2.4866 16 7 9.9898 -3.0950 -3.7715 17 14 9.6682 -4.2419 -1.2691 18 1 8.2252 -4.4633 -0.9972 19 1 10.2599 -5.4786 -1.8398 20 1 10.3638 -3.8992 -0.0026 21 6 9.5944 0.0312 -0.0385 22 6 8.3069 0.2798 0.7649 23 6 8.6059 0.7747 2.1814 24 6 7.4067 1.2597 -0.0053 25 8 3.4540 -0.7362 0.0033 26 7 2.2847 -1.0433 0.0048 27 1 -0.3633 0.0046 1.0278 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3634 -0.8921 -0.5099 30 1 2.0679 2.1746 0.0004 31 1 5.3936 -1.2646 0.5102 32 1 6.3137 -1.1607 -1.0175 33 1 8.9803 -2.6794 0.6652 34 1 7.8056 -2.6527 -0.6804 35 1 9.9800 -4.0124 -4.0863 36 1 9.7879 0.8719 -0.7047 37 1 10.4364 -0.1116 0.6388 38 1 7.6708 0.9032 2.7264 39 1 9.2298 0.0448 2.6972 40 1 9.1304 1.7288 2.1297 41 1 7.3944 2.2282 0.4946 42 1 7.7654 1.3716 -1.0285 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091473836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = 44.442750 kcal Electronic energy + Delta-G solvation = -25868.776235 eV Core-core repulsion = 22238.469494 eV Total energy + Delta-G solvation = -3630.306741 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.10822 -41.77311 -39.94370 -36.83456 -35.91954 -34.65710 -33.41040 -32.83767 -31.84444 -29.65800 -28.15047 -27.83125 -27.20258 -24.85564 -24.08721 -23.26645 -22.41209 -20.79890 -20.33983 -18.94254 -18.77860 -18.63475 -17.61962 -17.36816 -16.94131 -16.61229 -16.11253 -15.54599 -15.21921 -15.08658 -14.81598 -14.37831 -14.23112 -14.21601 -14.13983 -13.98711 -13.74619 -13.53931 -13.44373 -13.20702 -12.86348 -12.60440 -12.44385 -12.31388 -12.08930 -11.88335 -11.59754 -11.57642 -11.51740 -11.26748 -11.16338 -10.90631 -10.83586 -9.94113 -9.07274 -8.14113 -5.41388 -0.37527 0.96587 1.32114 1.34089 1.41882 1.49954 1.74820 1.95269 2.43803 3.03241 3.05661 3.10818 3.30436 3.36641 3.53165 3.70865 3.79574 3.91156 4.10418 4.15296 4.24726 4.31695 4.36943 4.62995 4.65308 4.68713 4.71587 4.73185 4.79765 4.81792 4.83701 4.87442 4.89592 5.08256 5.15708 5.17846 5.18891 5.27709 5.43431 5.67433 6.12297 6.15083 6.59308 6.75018 6.98545 7.54544 8.12791 9.05846 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.004583 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.868835 B = 6107.453644 C = 7032.482272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 C -0.142 4.142 4 C -0.093 4.093 5 C 0.620 3.380 6 O -0.543 6.543 7 N -0.597 5.597 8 C 0.108 3.892 9 C -0.095 4.095 10 H 0.125 0.875 11 C 0.112 3.888 12 N -0.625 5.625 13 C -0.225 4.225 14 H 0.060 0.940 15 C -0.040 4.040 16 N -0.962 5.962 17 Si 0.943 3.057 18 H -0.268 1.268 19 H -0.313 1.313 20 H -0.260 1.260 21 C 0.139 3.861 22 C -0.074 4.074 23 C -0.120 4.120 24 C 0.123 3.877 25 O 0.101 5.899 26 N -0.372 5.372 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.206 0.794 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.239 8.313 14.766 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.141 4.141 3 C -0.164 4.164 4 C -0.158 4.158 5 C 0.407 3.593 6 O -0.422 6.422 7 N -0.328 5.328 8 C -0.015 4.015 9 C -0.115 4.115 10 H 0.143 0.857 11 C -0.013 4.013 12 N -0.351 5.351 13 C -0.354 4.354 14 H 0.078 0.922 15 C -0.234 4.234 16 N -0.610 5.610 17 Si 0.772 3.228 18 H -0.194 1.194 19 H -0.242 1.242 20 H -0.185 1.185 21 C 0.015 3.985 22 C -0.076 4.076 23 C -0.177 4.177 24 C 0.002 3.998 25 O 0.032 5.968 26 N -0.077 5.077 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.223 0.777 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.466 7.579 14.561 23.250 hybrid contribution 0.413 -0.331 -0.505 0.732 sum -16.053 7.248 14.056 22.534 Atomic orbital electron populations 1.20432 0.82304 1.05413 1.05156 1.24318 1.01060 0.87377 1.01328 1.23225 0.88926 1.02884 1.01373 1.24086 0.97172 0.84301 1.10254 1.16221 0.80476 0.85407 0.77162 1.90837 1.86120 1.12399 1.52883 1.48428 1.05672 1.08747 1.69907 1.22386 0.98921 0.79232 1.00940 1.22793 0.93048 0.95492 1.00162 0.85712 1.21840 0.91698 0.94150 0.93644 1.45240 1.51694 1.19337 1.18822 1.18583 1.33101 0.92901 0.90800 0.92222 1.25601 1.01194 0.99498 0.97112 1.69953 1.56747 1.19969 1.14283 0.86007 0.78343 0.78778 0.79662 1.19428 1.24231 1.18503 1.21922 0.94936 0.88469 0.93210 1.22089 0.94615 0.93683 0.97217 1.21677 1.02317 1.01985 0.91730 1.22245 0.79423 0.97695 1.00473 1.85065 1.21616 1.22241 1.67843 1.73757 0.89636 1.25675 1.18662 0.88122 0.87357 0.90056 0.77687 0.88270 0.92430 0.94611 0.93564 0.93064 0.92866 0.93535 0.91508 0.91112 0.90803 0.88643 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.47 71.24 0.75 -0.06 16 2 C 0.02 0.34 7.31 43.55 0.32 0.66 16 3 C -0.14 -2.93 10.91 22.68 0.25 -2.69 16 4 C -0.09 -2.43 7.08 24.39 0.17 -2.25 16 5 C 0.62 18.41 7.88 86.69 0.68 19.09 16 6 O -0.54 -18.11 17.15 -3.99 -0.07 -18.18 16 7 N -0.60 -17.60 3.32 -818.99 -2.72 -20.32 16 8 C 0.11 3.19 6.00 86.51 0.52 3.71 16 9 C -0.09 -2.73 3.63 -9.63 -0.04 -2.77 16 10 H 0.12 2.81 7.88 -2.39 -0.02 2.79 16 11 C 0.11 4.35 4.14 86.51 0.36 4.71 16 12 N -0.63 -28.20 3.24 -691.08 -2.24 -30.44 16 13 C -0.23 -12.64 10.65 84.03 0.90 -11.74 16 14 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 15 C -0.04 -2.34 5.45 84.86 0.46 -1.88 16 16 N -0.96 -60.80 13.97 21.65 0.30 -60.50 16 17 Si 0.94 45.84 24.36 68.60 1.67 47.52 16 18 H -0.27 -12.18 6.36 99.48 0.63 -11.55 16 19 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 20 H -0.26 -11.93 6.49 99.48 0.65 -11.28 16 21 C 0.14 4.84 6.34 86.19 0.55 5.39 16 22 C -0.07 -2.02 1.08 -51.03 -0.06 -2.07 16 23 C -0.12 -2.34 8.43 71.98 0.61 -1.74 16 24 C 0.12 3.56 6.11 86.49 0.53 4.09 16 25 O 0.10 2.76 8.52 65.85 0.56 3.33 16 26 N -0.37 -9.66 12.04 -48.85 -0.59 -10.25 16 27 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.21 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.10 2.58 5.88 -2.39 -0.01 2.57 16 32 H 0.06 2.05 7.46 -2.39 -0.02 2.03 16 33 H 0.04 1.39 6.16 -2.39 -0.01 1.37 16 34 H 0.05 1.99 5.20 -2.39 -0.01 1.98 16 35 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.05 1.88 7.49 -2.39 -0.02 1.86 16 37 H 0.05 1.53 7.87 -2.39 -0.02 1.51 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 2.47 7.60 -2.39 -0.02 2.45 16 42 H 0.06 1.97 7.40 -2.39 -0.02 1.96 16 Total: -1.00 -71.85 334.27 3.81 -68.04 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.90 Total: 8.36 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.99 Total: 12.45 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -5.25 Total: -121.51 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.49 Total: -14.86 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.52 kcal Total: -71.85 3.81 -68.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091473836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.484 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds